NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
-
Updated
Jun 4, 2024 - Python
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
Program takes in a string of DNA, and converts it to a protein chain.
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
Translation amino acid sequence to DNA sequence.
This Google colab notebook, allows for conservation analysis of user input genes, on their local machine. It relies on the MMSeq2 introduced by https://www.nature.com/articles/s41592-022-01488-1
We're encoding the amino acid sequence into binary strings and building a quantum circuit for each one. Then, we're creating a list of Pauli operators for each circuit, one for each qubit, and multiplying them together to get a badass Hamiltonian.
Protein to RNA reverse translation
An unofficial re-implementation of PiFold, a fast inverse-folding algorithm for protein sequence design, in PyTorch.
An application for illustrating the relative distances between protein structures.
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
Translation of the FASTA file with genetic code into aminoacid code.
Filter fasta sequences by length
Program to determine the similarity of two amino acid sequences
Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
FA21 Independent Study Semester Project
For the convenience of checking the contents of gene, transcripts,nucleic acid or amino acid sequences.
Add a description, image, and links to the amino-acid-sequence topic page so that developers can more easily learn about it.
To associate your repository with the amino-acid-sequence topic, visit your repo's landing page and select "manage topics."