-
Notifications
You must be signed in to change notification settings - Fork 98
CLI Statismo Build Shape Model
statismo-build-shape-model - builds shape models from a list of meshes
statismo-build-shape-model [options] output-file
statismo-build-model is used to build a shape model from a given list of meshes. The meshes have to be in correspondence.
In the simplest case, a model can be built from existing meshes with the following command
statismo-build-shape-model --data-list data.txt shapemodel.h5
In this case the file data.txt contains a list of filenames of meshes (which are already in correspondence) and writes a model called shapemodel.h5
-l, --data-list DATA_LIST : DATA_LIST is the path to a file containing a list of mesh-files that will be used to create the shape model. Please only give the path to one mesh-file per line in the data-list-file.
-o, --output-file OUTPUT_FILE : OUTPUT_FILE is the path where the newly build model should be saved.
-p, --procrustes PROCRUSTES_MODE : Specify how the data is aligned. PROCRUSTES_MODE can be reference which aligns all datasets rigidly to the reference or GPA which aligns all the datasets to the population mean.
-r, --reference FILE : Specify the reference used for model building. This is needed if PROCRUSTES-MODE is reference
-n, --noise NOISE : Specify the noise variance of the PPCA model. Defaults to 0
Build a model where the data is aligned to the procrustes mean
statismo-build-shape-model -p GPA -l data-list.txt shapemodel.h5
Build a model where the data is aligned to a given reference
statismo-build-shape-model -p reference -r ref.vtk -l data-list.txt shapemodel.h5
##Building Models: statismo-build-shape-model (8). Builds shape models from a list of meshes.
statismo-build-deformation-model (8). Builds deformation models from a list of deformation fields
statismo-build-gp-model (8). Builds shape or deformation models from a given gaussian process definition.
##Working with models:
statismo-sample (8). Draws samples from a model.
statismo-reduce-model (8). Reduces the number of components in a model.
statismo-posterior (8). Creates a posterior model from an existing model.
statismo-fit-surface (8). Fits a model iteratively in to a target mesh.
statismo-fit-image (8). Fits a model iteratively to an image.
statismo-warp-image (8). Applies a deformation field to an image.