v8.11.3

8.11.3 (2024-05-03)

Bug Fixes

• ignore errors when cleaning up runtime cache (#2859) (6df7046)
• show queries of remote storage files instead of local paths in summary (#2860) (ba1db8e)

v8.11.2

8.11.2 (2024-05-02)

Bug Fixes

• bug when requesting extended benchmark with slurm (#2855) (0e039ff)

v8.11.1

8.11.1 (2024-04-29)

Bug Fixes

• check template rendering output for leaked input file paths (#2850) (433302e)
• do not distinguish between local and remote rules in dryrun (74b99ec)
• omit norun jobs when determining remote storage input file retrieval (#2854) (37a7c7f)
• Prevent binary log files to crash snakemake execution with show-failed-logs (#2827) (8a80bda)
• replace pkg_resources for python 3.12 (#2831) (ac144fc)
• return set instead of list when just --quiet (#2829) (eeb57e2)
• small typo in error (#2853) (325a715)
• use keyword arguments in _IOFile.open (#2847) (50c84dc)

Documentation

• fix typo and link for RO Crate (#2851) (cec0041)

v8.11.0

8.11.0 (2024-04-25)

Features

• allow for more extensive benchmark file in jsonl format (#2691) (de12463)

Bug Fixes

• only download input for local jobs in the main process, not within remote groups (#2842) (97f428b)
• remove non-empty local copies of remote storage dirs (#2845) (71b2b87)
• retrieve files from storage if necessary when calling their open method (e.g. when accessing output files from a checkpoint) (#2839) (5448208)

v8.10.8

8.10.8 (2024-04-19)

Bug Fixes

• extend workflow test suite by wildcards with slashes (in order to detect bugs that can occur in executors) (#2810) (fc9971b)
• invalid extensions with multixt and cache (#1808) (#2823) (a845b1c)
• module prefix added twice on expand (#2814) (27416f4)
• retrieve inputs of local rules from storage even if they are intermediate results (#2811) (d158aa8)

Documentation

• add snakemake and reportplugins to req.txt to show all cli options (#2817) (aaa9065)

v8.10.7

8.10.7 (2024-04-12)

Bug Fixes

• expand error on modules with prefix (#1614) (#2803) (c6bfcd7)
• failure message in cleanup_metadata (#2800) (4c7fe55)
• handle async method in cleanup_storage_objects (#2806) (272205b)

Documentation

• add Morten Lund as another maintainer. (293bc05)

v8.10.6

8.10.6 (2024-04-04)

Bug Fixes

• only constrain by --max-threads if threads of job are already known (#2790) (5f28fcd)

v8.10.5

8.10.5 (2024-04-04)

Bug Fixes

• properly delete local copies of storage files after remote jobs (#2793) (e3362b0)
• respect APPTAINER_CACHEDIR and allow env variables in --apptainer-prefix and --conda-prefix (#2795) (b1694cd)

v8.10.4

8.10.4 (2024-03-27)

Documentation

• fix links (420ea9c)

v8.10.3

8.10.3 (2024-03-27)

Documentation

• mention maintainers (be95e25)