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feat: allow input url passthrough to executor backend #2639

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@KrKOo KrKOo commented Jan 22, 2024

Description

This PR adds an additional 'passthrough' flag for input files. The flag makes it possible to pass the URL directly to the executor backend, which downloads the file instead of Snakemake. This is especially useful when running the job on a custom executor implementation that handles additional protocols not implemented as Snakemake storage plugins.

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

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sonarcloud bot commented Jan 22, 2024

Quality Gate Failed Quality Gate failed

Failed conditions

1 Security Hotspot

See analysis details on SonarCloud

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