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fix: set channel priority in container system wide #1690

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merged 1 commit into from May 31, 2022
Merged

fix: set channel priority in container system wide #1690

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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -8,7 +8,7 @@ ENV SHELL /bin/bash
RUN install_packages wget curl bzip2 ca-certificates gnupg2 squashfs-tools git
RUN /bin/bash -c "curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh > mambaforge.sh && \
bash mambaforge.sh -b -p /opt/conda && \
conda config --set channel_priority strict && \
conda config --system --set channel_priority strict && \
rm mambaforge.sh"
RUN /bin/bash -c "mamba create -q -y -c conda-forge -c bioconda -n snakemake snakemake snakemake-minimal --only-deps && \
source activate snakemake && \
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