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feat: automatically rerun jobs if parameters, code, input file set, or software stack changed (thanks to @cclienty and @timtroendle). This also increases performance of DAG building by handling job "needrun" updates level wise, while avoiding to perform a full check for those jobs that are already downstream of a job that has been determined to require a rerun. #1663

Merged
merged 12 commits into from May 24, 2022
Merged

feat: automatically rerun jobs if parameters, code, input file set, or software stack changed (thanks to @cclienty and @timtroendle). This also increases performance of DAG building by handling job "needrun" updates level wise, while avoiding to perform a full check for those jobs that are already downstream of a job that has been determined to require a rerun. #1663

merged 12 commits into from May 24, 2022

Commits on May 17, 2022

  1. feat: automatically rerun jobs if parameters, code, input file set, o… 

    …r software stack changed
    @johanneskoester
    johanneskoester committed May 17, 2022
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Commits on May 18, 2022

  1. fix script modification date check

    @johanneskoester
    johanneskoester committed May 18, 2022
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Commits on May 20, 2022

  1. add command line parameters for setting rerun triggers

    @johanneskoester
    johanneskoester committed May 20, 2022
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  2. fix

    @johanneskoester
    johanneskoester committed May 20, 2022
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  3. fix msg

    @johanneskoester
    johanneskoester committed May 20, 2022
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  4. always print reason

    @johanneskoester
    johanneskoester committed May 20, 2022
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  5. Merge branch 'feat/rerun-on-all-changes' of github.com:snakemake/snak… 

    …emake into feat/rerun-on-all-changes
    @johanneskoester
    johanneskoester committed May 20, 2022
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  6. help message

    @johanneskoester
    johanneskoester committed May 20, 2022
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  7. remove check for non mtime changes since that is now handled by --rer… 

    …un-triggers
    @johanneskoester
    johanneskoester committed May 20, 2022
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  8. speedup of needrun determination

    @johanneskoester
    johanneskoester committed May 20, 2022
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Commits on May 23, 2022

  1. remove traces of old modification time only rerun triggering

    @johanneskoester
    johanneskoester committed May 23, 2022
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  2. docs

    @johanneskoester
    johanneskoester committed May 23, 2022
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