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docs: singularity sometimes uses system /tmp explanation #1588

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merged 10 commits into from May 11, 2022
Merged

docs: singularity sometimes uses system /tmp explanation #1588

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8a29c22
Update conda.py
Maarten-vd-Sande Apr 21, 2022
f1e836f
Update conda.py
Maarten-vd-Sande Apr 21, 2022
3247bb6
Update conda.py
Maarten-vd-Sande Apr 21, 2022
59e132e
Merge branch 'main' into patch-1
Maarten-vd-Sande Apr 21, 2022
3e69d30
Merge branch 'main' into patch-1
Maarten-vd-Sande Apr 21, 2022
490984f
Merge branch 'main' into patch-1
Maarten-vd-Sande Apr 22, 2022
f172365
add to docs
Maarten-vd-Sande May 10, 2022
68231ee
extra space
Maarten-vd-Sande May 10, 2022
2336f56
Update docs/project_info/faq.rst
johanneskoester May 10, 2022
895660a
Merge branch 'main' into patch-1
Maarten-vd-Sande May 11, 2022
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4 changes: 3 additions & 1 deletion snakemake/deployment/conda.py
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Expand Up @@ -522,7 +522,9 @@ def create(self, dryrun=False):

@classmethod
def get_singularity_envvars(self):
return {"CONDA_PKGS_DIRS": "/tmp/conda/{}".format(uuid.uuid4())}
return {
"CONDA_PKGS_DIRS": "{}/conda/{}".format(tempfile.gettempdir(), uuid.uuid4())
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}

def __hash__(self):
# this hash is only for object comparison, not for env paths
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