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feat: Zenodo remote provider for transparent storage on and retrieval from Zenodo #1455

Merged
merged 2 commits into from Mar 4, 2022

Commits on Mar 3, 2022

  1. feat: Zenodo remote provider for transparent storage on and retrieval…

    … from Zenodo (#125)
    
    * added zenodo remote provider
    
    * added test
    
    * updated formatting
    
    * added sandbox, access_token is required, create new deposition when deposition id is not provided
    
    * updated test Snakefile
    
    * added initial zenodo remote documentation
    
    * added zenodo branches for ci
    
    * fixed code formatting
    
    * added zenodo sandbox pat to workflow
    
    * added zenodo remote test
    
    * fixed formatting
    
    * deleted comment
    
    * skip tibanna test for now
    
    * deleted branch
    
    * added zenodo file exception when hits api limit
    
    * moves file size assertion to remoteobject
    
    * updated test
    
    * added test file
    
    * run also too large upload test
    
    * updated docs
    
    * Delete superfluous file.
    
    * removed error handling around requests and re as unnecessary
    
    * updated error message
    
    * moved download code to remoteobject
    
    * use download url
    
    * fixed formatting
    
    * upload large files
    
    * fixed formatting
    
    * removed makedir
    
    * updated test, download to subdir
    
    * moved exception handling to request wrapper
    
    * removed zen branch from ci
    
    * fixed deposition id handling
    
    * fixed stats is not defined
    
    * fix download
    
    * fixed test download path, updated docs
    
    * Only run test if token is available.
    
    * fmt
    
    * envvars
    
    * fix skip criterion
    
    * fix error handling
    
    * windows secret
    
    Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>
    Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>
    3 people committed Mar 3, 2022
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Commits on Mar 4, 2022

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