fix: consider post-deploy script for env hashing

snakemake/deployment/conda.py

@@ -102,7 +102,11 @@ def _get_content(self):
     def _get_content_deploy(self):
         self.check_is_file_based()
         deploy_file = Path(self.file).with_suffix(".post-deploy.sh")
-        return self.workflow.sourcecache.open(deploy_file, "rb").read()
+        if deploy_file.exists():
+            return self.workflow.sourcecache.open(
+                infer_source_file(deploy_file), "rb"
+            ).read()
+        return None
 
     @property
     def _env_archive_dir(self):
@@ -139,6 +143,9 @@ def hash(self):
                 md5hash.update(env_dir.encode())
                 if self._container_img:
                     md5hash.update(self._container_img.url.encode())
+                content_deploy = self.content_deploy
+                if content_deploy:
+                    md5hash.update(self.content_deploy)
                 md5hash.update(self.content)
                 self._hash = md5hash.hexdigest()
         return self._hash
@@ -148,6 +155,9 @@ def content_hash(self):
         if self._content_hash is None:
             md5hash = hashlib.md5()
             md5hash.update(self.content)
+            content_deploy = self.content_deploy
+            if content_deploy:
+                md5hash.update(content_deploy)
             self._content_hash = md5hash.hexdigest()
         return self._content_hash
 

tests/test_deploy_hashing/Snakefile

@@ -0,0 +1,19 @@
+rule all:
+    input:
+        expand("{s}.txt", s=["a", "b"])
+
+rule a:
+    output:
+        "a.txt"
+    conda:
+        "a.yaml"
+    shell:
+        "touch {output}"
+
+rule b:
+    output:
+        "b.txt"
+    conda:
+        "b.yaml"
+    shell:
+        "touch {output}"

tests/test_deploy_hashing/a.post-deploy.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+echo "test" > $CONDA_PREFIX/a.txt

tests/test_deploy_hashing/a.yaml

@@ -0,0 +1,5 @@
+channels:
+  - bioconda
+  - conda-forge
+dependencies:
+  - python =3.10

tests/test_deploy_hashing/b.yaml

@@ -0,0 +1,5 @@
+channels:
+  - bioconda
+  - conda-forge
+dependencies:
+  - python =3.10

tests/tests.py

@@ -434,6 +434,12 @@ def test_deploy_script():
     run(dpath("test_deploy_script"), use_conda=True)
 
 
+@skip_on_windows
+def test_deploy_hashing():
+    tmpdir = run(dpath("test_deploy_hashing"), use_conda=True, cleanup=False)
+    assert len(next(os.walk(os.path.join(tmpdir, ".snakemake/conda")))[1]) == 2
+
+
 def test_conda_custom_prefix():
     run(
         dpath("test_conda_custom_prefix"),