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fix: --conda-frontend value not passed on to cluster jobs #1317

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merged 2 commits into from Jan 11, 2022
Merged

fix: --conda-frontend value not passed on to cluster jobs #1317

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d7607ee
fix: --conda-frontend value not passed on to cluster jobs
cjops Jan 6, 2022
eab5b71
fmt
johanneskoester Jan 11, 2022
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4 changes: 4 additions & 0 deletions snakemake/executors/__init__.py
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Expand Up @@ -293,6 +293,10 @@ def get_additional_args(self):
additional += " --shadow-prefix {} ".format(self.workflow.shadow_prefix)
if self.workflow.use_conda:
additional += " --use-conda "
if self.workflow.conda_frontend:
additional += " --conda-frontend {} ".format(
self.workflow.conda_frontend
)
if self.workflow.conda_prefix:
additional += " --conda-prefix {} ".format(self.workflow.conda_prefix)
if self.workflow.conda_base_path and self.assume_shared_fs:
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