Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fix: add quotes to each item of the wait_for_files list #1160

Merged
merged 6 commits into from Oct 21, 2021
Merged

fix: add quotes to each item of the wait_for_files list #1160

Changes from 3 commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
e1c723d
Add quotes to tmp dir in wait-for-file options
fdchevalier Aug 29, 2021
2d5bd2a
Add quotes to each item of the wait_for_files list
fdchevalier Aug 31, 2021
4ff9f47
Add quotes to the wait_for_files_file path
fdchevalier Aug 31, 2021
a043704
Improve quoting strategy
fdchevalier Sep 8, 2021
906d485
Format following Black code style
fdchevalier Sep 14, 2021
d9c78d6
Merge branch 'main' into wait_path_quotes
johanneskoester Oct 21, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
4 changes: 2 additions & 2 deletions snakemake/executors/__init__.py
View file
Open in desktop
Expand Up @@ -788,11 +788,11 @@ def format_job(self, pattern, job, **kwargs):

waitfiles_parameter = format(
"--wait-for-files-file {wait_for_files_file}",
wait_for_files_file=wait_for_files_file,
wait_for_files_file=('"' + wait_for_files_file + '"'),
fdchevalier marked this conversation as resolved.
Show resolved Hide resolved
)
else:
waitfiles_parameter = format(
"--wait-for-files {wait_for_files}", wait_for_files=wait_for_files
"--wait-for-files {wait_for_files}", wait_for_files=(" ".join(['"{0}"'.format(x) for x in wait_for_files])),
fdchevalier marked this conversation as resolved.
Show resolved Hide resolved
)

format_p = partial(
Expand Down