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feat: Add support for rust scripts (enabling directly integrated ad-hoc robust high performance scripting) #1053

Merged
merged 42 commits into from Aug 12, 2021
Merged

feat: Add support for rust scripts (enabling directly integrated ad-hoc robust high performance scripting) #1053

merged 42 commits into from Aug 12, 2021

Commits on Jun 14, 2021

  1. add support for rust scripts

    @tedil
    tedil committed Jun 14, 2021
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Commits on Jun 16, 2021

  1. Merge branch 'main' into rust-script

    @johanneskoester
    johanneskoester committed Jun 16, 2021
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  2. add rust environment yaml

    @tedil
    tedil committed Jun 16, 2021
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  3. Merge branch 'rust-script' of github.com:snakemake/snakemake into rus… 

    …t-script
    @tedil
    tedil committed Jun 16, 2021
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Commits on Jun 17, 2021

  1. add missing files

    @tedil
    tedil committed Jun 17, 2021
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  2. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jun 17, 2021
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  3. some basic docs

    @tedil
    tedil committed Jun 17, 2021
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Commits on Jun 22, 2021

  1. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jun 22, 2021
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Commits on Jun 24, 2021

  1. clarify default dependencies

    @mbhall88
    mbhall88 committed Jun 24, 2021
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Commits on Jun 25, 2021

  1. add functionality to handle cargo manifest

    @mbhall88
    mbhall88 committed Jun 25, 2021
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  2. Merge branch 'rust-script' of github.com:snakemake/snakemake into rus… 

    …t-script
    @mbhall88
    mbhall88 committed Jun 25, 2021
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  3. remove redundant continue

    @mbhall88
    mbhall88 committed Jun 25, 2021
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  4. add some more rust script docs and restructure scripts docs

    @mbhall88
    mbhall88 committed Jun 25, 2021
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Commits on Jul 5, 2021

  1. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jul 5, 2021
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  2. use NamedList type instead of HashMap

    @tedil
    tedil committed Jul 5, 2021
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  3. merge

    @tedil
    tedil committed Jul 5, 2021
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  4. remove additional '--features', add indexmap/serde dependency+feature

    @tedil
    tedil committed Jul 5, 2021
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  5. update test-manifest.rs to use namedlist API aswell

    @tedil
    tedil committed Jul 5, 2021
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  6. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jul 5, 2021
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Commits on Jul 10, 2021

  1. add outer line doc testing and pin rust-script version

    @mbhall88
    mbhall88 committed Jul 10, 2021
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Commits on Jul 11, 2021

  1. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jul 11, 2021
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Commits on Jul 13, 2021

  1. small fixes for rust outer doc test

    @mbhall88
    mbhall88 committed Jul 13, 2021
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  2. format shell log string for rust-script

    @mbhall88
    mbhall88 committed Jul 13, 2021
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  3. fmt

    @mbhall88
    mbhall88 committed Jul 13, 2021
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  4. add missing test file

    @mbhall88
    mbhall88 committed Jul 13, 2021
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  5. add missing rust script

    @mbhall88
    mbhall88 committed Jul 13, 2021
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Commits on Jul 20, 2021

  1. replace serde-pickle with serde_json + json_typegen

    @tedil
    tedil committed Jul 20, 2021
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  2. fmt

    @tedil
    tedil committed Jul 20, 2021
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  3. only iter over positional items

    @tedil
    tedil committed Jul 20, 2021
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  4. fmt

    @tedil
    tedil committed Jul 20, 2021
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Commits on Jul 21, 2021

  1. add code to modify PATH, add functions for redirecting stdout, stderr… 

    …, fmt and one stray fmt commit
    @tedil
    tedil committed Jul 21, 2021
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  2. use fully qualified names instead of use statements

    @tedil
    tedil committed Jul 21, 2021
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  3. update docs

    @tedil
    tedil committed Jul 21, 2021
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Commits on Jul 23, 2021

  1. remove print and todo

    @tedil
    tedil committed Jul 23, 2021
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  2. use ordered list instead

    @tedil
    tedil committed Jul 23, 2021
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  3. remove example TODO

    @tedil
    tedil committed Jul 23, 2021
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  4. move comment about R snakemake@source() function to the R section

    @tedil
    tedil committed Jul 23, 2021
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  5. update src comments

    @tedil
    tedil committed Jul 23, 2021
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Commits on Jul 26, 2021

  1. Merge branch 'main' into rust-script

    @tedil
    tedil committed Jul 26, 2021
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Commits on Jul 27, 2021

  1. make log impl_iter and dont redirect rust-script stream

    @mbhall88
    mbhall88 committed Jul 27, 2021
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Commits on Aug 6, 2021

  1. minor additions to the docs

    @mbhall88
    mbhall88 committed Aug 6, 2021
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Commits on Aug 11, 2021

  1. Merge branch 'main' into rust-script

    @tedil
    tedil committed Aug 11, 2021
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