chore: setup slurm via ansible (#1719)

* chore: setup slurm via ansible

* move to top for testing

* fix repo definition

* try using inventory file

* try defining role path

* fix path

* try using ansible-galaxy and ansible-playbook commands

* try localhost

* be root and verbose

* fix

* show error log

* try setting StorageType

* skip dbd

* minor

* add quick test

* remove verbose

* fix test script

* run squeue

* simplify test

* polishing

.github/workflows/main.yml

@@ -50,7 +50,7 @@ jobs:
       - uses: actions/checkout@v2
         with:
           fetch-depth: 0 # we need tags for versioneer to work
-      
+
       - name: Setup Snakemake environment
         run: |
           export PATH="/usr/share/miniconda/bin:$PATH"
@@ -92,6 +92,35 @@ jobs:
           aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
           aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
           aws-region: us-east-1
+
+      ###### slurm setup #####
+
+      - name: Download slurm ansible roles
+        run: |
+          ansible-galaxy install galaxyproject.slurm
+
+      - name: Define slurm playbook
+        uses: 1arp/create-a-file-action@0.2
+        with:
+          file: slurm-playbook.yml
+          content: |
+            - name: Slurm all in One
+              hosts: localhost
+              vars:
+                slurm_roles: ['controller', 'exec']
+              roles:
+                - role: galaxyproject.slurm
+                  become: true
+
+      - name: Setup slurm
+        run: |
+          ansible-playbook slurm-playbook.yml || (journalctl -xe && exit 1)
+
+      - name: Test slurm submission
+        run: |
+          srun echo "hello world"
+      
+      ###### finalized slurm setup #####
 
       - name: Run tests
         env: