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Explain new behaviour in the docs
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sposadac committed Jun 17, 2021
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4 changes: 3 additions & 1 deletion docs/snakefiles/rules.rst
Expand Up @@ -1331,6 +1331,8 @@ However, if we would add ``group: "mygroup"`` to rule ``c``, all jobs would end
Alternatively, groups can be defined via the command line interface.
This enables to almost arbitrarily partition the DAG, e.g. in order to safe network traffic, see :ref:`here <job_grouping>`.
For execution on the cloud using Google Life Science API and preemptible instances, note than if any of the rules in a group is included in the subset of rules to be executed using preembtible instances (with command line option ``--preemptible-rules``), the group will be also scheduled to be executed on a preemptible instance.
Piped output
------------
Expand Down Expand Up @@ -1691,4 +1693,4 @@ This can be achieved by accessing their path via the ``workflow.get_source``, wh
params:
json=workflow.source_path("../resources/test.json")
shell:
"somecommand {params.json} > {output}"
"somecommand {params.json} > {output}"

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