Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

perf: autobump bio/freebayes #2790

Merged
merged 2 commits into from Apr 5, 2024
Merged

perf: autobump bio/freebayes #2790

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
26e1829
perf: update bio/freebayes/environment.yaml.
snakedeploy-bot[bot] Apr 5, 2024
4027ced
perf: update env pinning.
snakedeploy-bot[bot] Apr 5, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
71 changes: 36 additions & 35 deletions bio/freebayes/environment.linux-64.pin.txt
View file
Open in desktop
Expand Up @@ -3,57 +3,58 @@
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef
https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_5.conda#f6f6600d18a4047b54f803cf708b868a
https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_5.conda#d211c42b9ce49aee3734fdc828731689
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.21.0-hd590300_0.conda#c06fa0440048270817b9e3142cc661bf
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_5.conda#d4ff227c46917d3b4565302a2bbb276b
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f
https://conda.anaconda.org/conda-forge/linux-64/eigen-3.4.0-h00ab1b0_0.conda#b1b879d6d093f55dd40d58b5eb2f0699
https://conda.anaconda.org/conda-forge/linux-64/jsoncpp-1.9.5-h4bd325d_1.tar.bz2#ae7f50dd1e78c7e78b5d2cf7062e559d
https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.19-hd590300_0.conda#1635570038840ee3f9c71d22aa5b8b6d
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.18-h0b41bf4_0.conda#6aa9c9de5542ecb07fdda9ca626252d8
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_2.conda#78fdab09d9138851dde2b5fe2a11019e
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_5.conda#7a6bd7a12a4bd359e2afe6c0fa1acace
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.4-hd590300_0.conda#412ba6938c3e2abaca8b1129ea82e238
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4.20240210-h59595ed_0.conda#97da8860a0da5413c7c98a3b3838a645
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.2.1-hd590300_1.conda#9d731343cff6ee2e5a25c4a091bf8e2a
https://conda.anaconda.org/conda-forge/linux-64/sed-4.8-he412f7d_0.tar.bz2#7362f0042e95681f5d371c46c83ebd08
https://conda.anaconda.org/bioconda/linux-64/wfa2-lib-2.3.4-h4ac6f70_0.tar.bz2#75e9b7b0f4f949c3dc0bb530c45fa863
https://conda.anaconda.org/bioconda/linux-64/wfa2-lib-2.3.4-h4ac6f70_1.tar.bz2#d4960247cfc981ce600ef4f5c0a67ab0
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.0-hf5e1c6e_3.tar.bz2#12923179bf2aa30867534a335c8d1a46
https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.1-hf5e1c6e_1.tar.bz2#2066287e826a2ff469fa0b62b24b6059
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_2.conda#e75a75a6eaf6f318dae2631158c46575
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.55.1-h47da74e_0.conda#a802251d1eaeeae041c867faf0f94fa8
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.44.0-h2797004_0.conda#b58e6816d137f3aabf77d341dd5d732b
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_5.conda#e73e9cfd1191783392131e6238bdb3e9
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.45.2-h2797004_0.conda#866983a220e27a80cb75e85cb30466a1
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-4_hd590300_perl5.conda#3e785bff761095eb7f8676f4694bd1b1
https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-h2797004_0.conda#513336054f884f95d9fd925748f41ef3
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h4845f30_101.conda#d453b98d9c83e71da0741bb0ff4d76bc
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda#68c34ec6149623be41a1933ab996a209
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda#04b88013080254850d6c01ed54810589
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.24-pthreads_h413a1c8_0.conda#6e4ef6ca28655124dcde9bd500e44c32
https://conda.anaconda.org/conda-forge/linux-64/parallel-20230922-ha770c72_0.conda#dddd6d76147c54b06b138146e03f2918
https://conda.anaconda.org/conda-forge/linux-64/python-3.12.0-hab00c5b_0_cpython.conda#7f97faab5bebcc2580f4f299285323da
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-19_linux64_openblas.conda#420f4e9be59d0dc9133a0f43f7bab3f3
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.4.0-hca28451_0.conda#1158ac1d2613b28685644931f11ee807
https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.26-pthreads_h413a1c8_0.conda#760ae35415f5ba8b15d09df5afe8b23a
https://conda.anaconda.org/conda-forge/linux-64/parallel-20240322-ha770c72_0.conda#5ad3f5eb0086ae5ca3cf926c0773b844
https://conda.anaconda.org/conda-forge/linux-64/python-3.12.2-hab00c5b_0_cpython.conda#ad7b68400f3a6ebe72b00be093c7f301
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-21_linux64_openblas.conda#0ac9f44fc096772b0aa092119b00c3ca
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.7.1-hca28451_0.conda#755c7f876815003337d2c61ff5d047e5
https://conda.anaconda.org/conda-forge/noarch/setuptools-69.2.0-pyhd8ed1ab_0.conda#da214ecd521a720a9d521c68047682dc
https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
https://conda.anaconda.org/conda-forge/noarch/wheel-0.41.3-pyhd8ed1ab_0.conda#3fc026b9c87d091c4b34a6c997324ae8
https://conda.anaconda.org/bioconda/linux-64/htslib-1.18-h81da01d_0.tar.bz2#cd4d586516b892e972215153099582db
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-19_linux64_openblas.conda#d12374af44575413fbbd4a217d46ea33
https://conda.anaconda.org/conda-forge/noarch/pip-23.3.1-pyhd8ed1ab_0.conda#2400c0b86889f43aa52067161e1fb108
https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda#0b5293a157c2b5cd513dd1b03d8d3aae
https://conda.anaconda.org/bioconda/linux-64/htslib-1.19.1-h81da01d_2.tar.bz2#ad57eedd99d6722b2f00a8f7d0d71e2a
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-21_linux64_openblas.conda#4a3816d06451c4946e2db26b86472cb6
https://conda.anaconda.org/conda-forge/noarch/pip-24.0-pyhd8ed1ab_0.conda#f586ac1e56c8638b64f9c8122a7b8a67
https://conda.anaconda.org/conda-forge/linux-64/gsl-2.7-he838d99_0.tar.bz2#fec079ba39c9cca093bf4c00001825de
https://conda.anaconda.org/bioconda/linux-64/samtools-1.18-h50ea8bc_1.tar.bz2#7a53b527d66566e2bd8d436766e9c39e
https://conda.anaconda.org/bioconda/linux-64/bcftools-1.18-h8b25389_0.tar.bz2#867b44092e8f67fafdf2161e3abe00ca
https://conda.anaconda.org/bioconda/linux-64/tabixpp-1.1.2-hd68fcf3_1.tar.bz2#4d38cb27632aaf55529c9d3963e6d18c
https://conda.anaconda.org/bioconda/linux-64/vcflib-1.0.9-h146fbdb_3.tar.bz2#a4fba295e850329fd946e523fe2c3d9f
https://conda.anaconda.org/bioconda/linux-64/freebayes-1.3.7-h1870644_0.tar.bz2#7f3de52989fcc6ba72c4d2a34780c353
https://conda.anaconda.org/bioconda/linux-64/samtools-1.19.2-h50ea8bc_1.tar.bz2#446e85653117e24527bc4ba6d3841d8b
https://conda.anaconda.org/bioconda/linux-64/bcftools-1.19-h8b25389_1.tar.bz2#f85e0af644cdb0e966d928889d6bdd95
https://conda.anaconda.org/bioconda/linux-64/tabixpp-1.1.2-h27d5293_2.tar.bz2#7feba890b84ecc438f13cc88deb3e7da
https://conda.anaconda.org/bioconda/linux-64/vcflib-1.0.9-hdcf5f25_6.tar.bz2#67a6e1c98e071c43b3c5ecf0ce6b1e63
https://conda.anaconda.org/bioconda/linux-64/freebayes-1.3.7-h6a68c12_2.tar.bz2#4eea99723233077c5a55b9c243e58883
2 changes: 1 addition & 1 deletion bio/freebayes/environment.yaml
View file
Open in desktop
Expand Up @@ -7,7 +7,7 @@ dependencies:
- bcftools =1.19
- vcflib =1.0.9
- htslib =1.19.1
- parallel =20240122
- parallel =20240322
- bedtools =2.31.1
- sed =4.8
- snakemake-wrapper-utils =0.6.2