Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

perf: autobump bio/gatk3/indelrealigner #2046

Merged
merged 1 commit into from Oct 31, 2023
Merged

perf: autobump bio/gatk3/indelrealigner #2046

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
141 changes: 141 additions & 0 deletions bio/gatk3/indelrealigner/environment.linux-64.pin.txt
View file
Open in desktop
@@ -0,0 +1,141 @@
# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45
https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2#34893075a5c9e55cdafac56607368fc6
https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2#4d59c254e01d9cde7957100457e2d5fb
https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-hab24e00_0.tar.bz2#19410c3df09dfb12d1206132a1d357c5
https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-2.6.32-he073ed8_16.conda#7ca122655873935e02c91279c5b03c8c
https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-13.2.0-ha9c7c90_2.conda#401c5cf212e568dab47e0677a000d2a7
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-devel_linux-64-13.2.0-ha9c7c90_2.conda#a0bf59008336aa76ad2a097a652c60bd
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
https://conda.anaconda.org/conda-forge/linux-64/openjdk-8.0.382-hd590300_0.conda#2a09fe16a737145f5eea3b282b368bbf
https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.12-he073ed8_16.conda#071ea8dceff4d30ac511f4a2f8437cd1
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.40-hf600244_0.conda#33084421a8c0af6aef1b439707f7662a
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.20.1-hd590300_1.conda#2facbaf5ee1a56967aecaee89799160e
https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8
https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37
https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h58526e2_1001.tar.bz2#8c54672728e8ec6aa6db90cf2806d220
https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff
https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2#76bbff344f0134279f225174e9064c8f
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.19-hd590300_0.conda#1635570038840ee3f9c71d22aa5b8b6d
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_2.conda#78fdab09d9138851dde2b5fe2a11019e
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2#b62b52da46c39ee2bc3c162ac7f1804d
https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-13.2.0-h7e041cc_2.conda#aa27066e2dcef56db7bc674f2230b6c9
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.3.2-hd590300_0.conda#30de3fd9b3b602f7473f30e684eeea8c
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
https://conda.anaconda.org/conda-forge/linux-64/make-4.3-hd18ef5c_1.tar.bz2#4049ebfd3190b580dffe76daed26155a
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.4-hd590300_0.conda#412ba6938c3e2abaca8b1129ea82e238
https://conda.anaconda.org/conda-forge/linux-64/pixman-0.42.2-h59595ed_0.conda#700edd63ccd5fc66b70b1c028cea9a68
https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036
https://conda.anaconda.org/conda-forge/linux-64/sed-4.8-he412f7d_0.tar.bz2#7362f0042e95681f5d371c46c83ebd08
https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2#4b230e8381279d76131116660f5a241a
https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.1.1-hd590300_0.conda#b462a33c0be1421532f28bfe8f4a7514
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.conda#2c80dc38fface310c9bd81b17037fee5
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.3-h7f98852_0.tar.bz2#be93aabceefa2fac576e971aef407908
https://conda.anaconda.org/conda-forge/linux-64/xorg-renderproto-0.11.1-h7f98852_1002.tar.bz2#06feff3d2634e3097ce2fe681474b534
https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h0b41bf4_1003.conda#bce9f945da8ad2ae9b1d7165a64d0f87
https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2#b4a4381d54784606820704f7b5f05a15
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
https://conda.anaconda.org/conda-forge/linux-64/expat-2.5.0-hcb278e6_1.conda#8b9b5aca60558d02ddaa09d599e55920
https://conda.anaconda.org/conda-forge/linux-64/gcc_impl_linux-64-13.2.0-h338b0a0_2.conda#b4f2ab4faf22658cca303570fd9a7662
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_2.conda#e75a75a6eaf6f318dae2631158c46575
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.55.1-h47da74e_0.conda#a802251d1eaeeae041c867faf0f94fa8
https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.39-h753d276_0.conda#e1c890aebdebbfbf87e2c917187b4416
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.43.2-h2797004_0.conda#4b441a1ee22397d5a27dc1126b849edd
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.15-h0b41bf4_0.conda#33277193f5b92bad9fdd230eb700929c
https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.40-hc3806b6_0.tar.bz2#69e2c796349cd9b273890bee0febfe1b
https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-h2797004_0.conda#513336054f884f95d9fd925748f41ef3
https://conda.anaconda.org/conda-forge/linux-64/xorg-libsm-1.2.4-h7391055_0.conda#93ee23f12bc2e684548181256edd2cf6
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda#68c34ec6149623be41a1933ab996a209
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda#04b88013080254850d6c01ed54810589
https://conda.anaconda.org/conda-forge/linux-64/bwidget-1.9.14-ha770c72_1.tar.bz2#5746d6202ba2abad4a4707f2a2462795
https://conda.anaconda.org/conda-forge/linux-64/freetype-2.12.1-h267a509_2.conda#9ae35c3d96db2c94ce0cef86efdfa2cb
https://conda.anaconda.org/conda-forge/linux-64/gfortran_impl_linux-64-13.2.0-h76e1118_2.conda#4983e17132a8fac913475db6e7aba288
https://conda.anaconda.org/conda-forge/linux-64/gxx_impl_linux-64-13.2.0-h338b0a0_2.conda#f595817f3270325ea833ef1d48d362ce
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844
https://conda.anaconda.org/conda-forge/linux-64/libglib-2.78.0-hebfc3b9_0.conda#e618003da3547216310088478e475945
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.24-pthreads_h413a1c8_0.conda#6e4ef6ca28655124dcde9bd500e44c32
https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.6.0-ha9c0a0a_2.conda#55ed21669b2015f77c180feb1dd41930
https://conda.anaconda.org/conda-forge/linux-64/python-3.12.0-hab00c5b_0_cpython.conda#7f97faab5bebcc2580f4f299285323da
https://conda.anaconda.org/conda-forge/linux-64/tktable-2.10-h0c5db8f_5.conda#9464044754ea25557a9c93f0327d90a6
https://conda.anaconda.org/conda-forge/linux-64/xorg-libx11-1.8.7-h8ee46fc_0.conda#49e482d882669206653b095f5206c05b
https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.2-h14ed4e7_0.conda#0f69b688f52ff6da70bccb7ff7001d1d
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-19_linux64_openblas.conda#420f4e9be59d0dc9133a0f43f7bab3f3
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.4.0-hca28451_0.conda#1158ac1d2613b28685644931f11ee807
https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
https://conda.anaconda.org/conda-forge/noarch/wheel-0.41.3-pyhd8ed1ab_0.conda#3fc026b9c87d091c4b34a6c997324ae8
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxext-1.3.4-h0b41bf4_2.conda#82b6df12252e6f32402b96dacc656fec
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hd590300_0.conda#ed67c36f215b310412b2af935bf3e530
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hd590300_1.conda#ae92aab42726eb29d16488924f7312cb
https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-h3faef2a_0.conda#f907bb958910dc404647326ca80c263e
https://conda.anaconda.org/conda-forge/linux-64/curl-8.4.0-hca28451_0.conda#2bcf7689cae931dd35d9a45626f49fce
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-19_linux64_openblas.conda#9f100edf65436e3eabc2a51fc00b2c37
https://conda.anaconda.org/conda-forge/noarch/pip-23.3.1-pyhd8ed1ab_0.conda#2400c0b86889f43aa52067161e1fb108
https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-8.2.1-h3d44ed6_0.conda#98db5f8813f45e2b29766aff0e4a499c
https://conda.anaconda.org/conda-forge/linux-64/pango-1.50.14-ha41ecd1_2.conda#1a66c10f6a0da3dbd2f3a68127e7f6a0
https://conda.anaconda.org/conda-forge/linux-64/r-base-4.3.1-h93585b2_6.conda#c14cf30d4f7373dcf225c690b9583a8c
https://conda.anaconda.org/conda-forge/linux-64/r-bitops-1.0_7-r43h57805ef_2.conda#0aa0283ccd0b3906b2282cb1a6f59a63
https://conda.anaconda.org/conda-forge/linux-64/r-cli-3.6.1-r43ha503ecb_1.conda#ff00e85e687f98d8f30ec766b3216a85
https://conda.anaconda.org/conda-forge/linux-64/r-colorspace-2.1_0-r43h57805ef_1.conda#22117ffc4b380dba0732166eec62d8cb
https://conda.anaconda.org/conda-forge/noarch/r-crayon-1.5.2-r43hc72bb7e_2.conda#f13cc355add93ff41ef3d7aeefee247a
https://conda.anaconda.org/conda-forge/linux-64/r-fansi-1.0.5-r43h57805ef_0.conda#723cf91a085fdf8bf693f2341cf0f21e
https://conda.anaconda.org/conda-forge/linux-64/r-farver-2.1.1-r43ha503ecb_2.conda#e831143bafe7770b86f3f5c3b5d40dc0
https://conda.anaconda.org/conda-forge/linux-64/r-glue-1.6.2-r43h57805ef_2.conda#7af63c041d350ae8a998addeb01bc582
https://conda.anaconda.org/conda-forge/noarch/r-gsalib-2.2.1-r43hc72bb7e_2.conda#ae83e92b3e220d5af7ac814ace840610
https://conda.anaconda.org/conda-forge/linux-64/r-gtools-3.9.4-r43h57805ef_1.conda#41936ded6bec66ed9f2abe88c2c59436
https://conda.anaconda.org/conda-forge/linux-64/r-isoband-0.2.7-r43ha503ecb_2.conda#6db3b5f97166c8b0fd8c995fbe32c89d
https://conda.anaconda.org/conda-forge/linux-64/r-kernsmooth-2.23_22-r43h13b3f57_0.conda#d0b0a94110edd9b36dd4203bcd189f8b
https://conda.anaconda.org/conda-forge/noarch/r-labeling-0.4.3-r43hc72bb7e_0.conda#8d5f7d07433437c48c1c497ec8c77aec
https://conda.anaconda.org/conda-forge/linux-64/r-lattice-0.22_5-r43h57805ef_0.conda#52bf3ca46933503df0c763469c130b70
https://conda.anaconda.org/conda-forge/linux-64/r-magrittr-2.0.3-r43h57805ef_2.conda#7b04cb810f47eb12efc2e9be5f8ca1f1
https://conda.anaconda.org/conda-forge/linux-64/r-mass-7.3_60-r43h57805ef_1.conda#be049620c8ceefdb69a24db0c1919c85
https://conda.anaconda.org/conda-forge/noarch/r-pkgconfig-2.0.3-r43hc72bb7e_3.conda#8978eef741fffaa48be070693a17f42f
https://conda.anaconda.org/conda-forge/noarch/r-r6-2.5.1-r43hc72bb7e_2.conda#79f167972554dc6b65aa099cd85c22a1
https://conda.anaconda.org/conda-forge/noarch/r-rcolorbrewer-1.1_3-r43h785f33e_2.conda#d998f26d6a55b83dab1c25b583e1463a
https://conda.anaconda.org/conda-forge/linux-64/r-rcpp-1.0.11-r43h7df8631_0.conda#416ec409cbdde03a886f6545040f10ca
https://conda.anaconda.org/conda-forge/linux-64/r-rlang-1.1.1-r43ha503ecb_1.conda#42c083f0e33b09087fa46ae1e5ca408f
https://conda.anaconda.org/conda-forge/linux-64/r-utf8-1.2.4-r43h57805ef_0.conda#d228498392dce22d3fe6266554498493
https://conda.anaconda.org/conda-forge/noarch/r-viridislite-0.4.2-r43hc72bb7e_1.conda#307f6c8262afed91d2999568e2268ed6
https://conda.anaconda.org/conda-forge/noarch/r-withr-2.5.2-r43hc72bb7e_0.conda#a1251de9fd33ecda30254e9928c15742
https://conda.anaconda.org/conda-forge/linux-64/r-catools-1.18.2-r43ha503ecb_2.conda#10dc470047ef823a1be2e3dbd2ae7acb
https://conda.anaconda.org/conda-forge/linux-64/r-ellipsis-0.3.2-r43h57805ef_2.conda#10c5892991072cfa3a61489d2ac6ad66
https://conda.anaconda.org/conda-forge/noarch/r-lifecycle-1.0.3-r43hc72bb7e_2.conda#1f30d09e499cc9dec194c80533ec549e
https://conda.anaconda.org/conda-forge/linux-64/r-matrix-1.6_1.1-r43h316c678_0.conda#b900d7709fbba6785cce2943cc0107db
https://conda.anaconda.org/conda-forge/noarch/r-munsell-0.5.0-r43hc72bb7e_1006.conda#22f529a11473af44bbe5d481bef9008d
https://conda.anaconda.org/conda-forge/linux-64/r-nlme-3.1_163-r43h61816a4_0.conda#ec13a2db3661c490be8086b7457e5dd8
https://conda.anaconda.org/conda-forge/linux-64/r-plyr-1.8.9-r43ha503ecb_0.conda#47bf330a88b5a59bc6e110624f1b8e7a
https://conda.anaconda.org/conda-forge/noarch/r-gplots-3.1.3-r43hc72bb7e_2.conda#bb14f7afd3a86986a210f37fbc9c7916
https://conda.anaconda.org/conda-forge/noarch/r-gtable-0.3.4-r43hc72bb7e_0.conda#11c5e5e3bd2b41005177c28c1ba46dc3
https://conda.anaconda.org/conda-forge/linux-64/r-mgcv-1.9_0-r43h316c678_0.conda#457861cc31161e3295ea4a33a341e59c
https://conda.anaconda.org/conda-forge/linux-64/r-reshape-0.8.9-r43hc72bb7e_2.conda#e24945cba9c156cf4e7154b3857f416d
https://conda.anaconda.org/conda-forge/noarch/r-scales-1.2.1-r43hc72bb7e_2.conda#15000d314c62a0ab088304962e34a058
https://conda.anaconda.org/conda-forge/linux-64/r-vctrs-0.6.4-r43ha503ecb_0.conda#828fadc1872e75e852210aef7c17de87
https://conda.anaconda.org/conda-forge/noarch/r-pillar-1.9.0-r43hc72bb7e_1.conda#7cff01456566a69381d3907d520c10b2
https://conda.anaconda.org/conda-forge/linux-64/r-tibble-3.2.1-r43h57805ef_2.conda#afa7d3f21fbc5a2fbaa48cb9bacb7bce
https://conda.anaconda.org/conda-forge/noarch/r-ggplot2-3.4.4-r43hc72bb7e_0.conda#387333c7465bdd8555d4c75d8ebf2c09
https://conda.anaconda.org/bioconda/noarch/gatk-3.8-hdfd78af_11.tar.bz2#7827b3c102797aa2da90b1bb525ba5b4