perf: autobump bio/gatk3/indelrealigner #827
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johanneskoester
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Nov 11, 2022
🤖 I have created a release \*beep\* \*boop\* --- ### [1.19.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.19.0...v1.19.1) (2022-11-11) ### Performance Improvements * autobump bio/bismark/bismark_genome_preparation ([#819](https://www.github.com/snakemake/snakemake-wrappers/issues/819)) ([1da1afc](https://www.github.com/snakemake/snakemake-wrappers/commit/1da1afc6c616b0376f5bd61269fd584d932e7527)) * autobump bio/bismark/bismark2report ([#812](https://www.github.com/snakemake/snakemake-wrappers/issues/812)) ([8ce5b1a](https://www.github.com/snakemake/snakemake-wrappers/commit/8ce5b1a4d2de950261237a1aafd8572eef778ef4)) * autobump bio/bismark/deduplicate_bismark ([#816](https://www.github.com/snakemake/snakemake-wrappers/issues/816)) ([7f539c4](https://www.github.com/snakemake/snakemake-wrappers/commit/7f539c4ac6f743fbe9e584b9e78efa35388ac82c)) * autobump bio/bowtie2/align ([#798](https://www.github.com/snakemake/snakemake-wrappers/issues/798)) ([6fa3cc7](https://www.github.com/snakemake/snakemake-wrappers/commit/6fa3cc7cad4a1c38b9e7107a55505586909a0904)) * autobump bio/bwa-meme/index ([#862](https://www.github.com/snakemake/snakemake-wrappers/issues/862)) ([68f9c48](https://www.github.com/snakemake/snakemake-wrappers/commit/68f9c480bdef3a053c09fa2eafa46e710e91762a)) * autobump bio/bwa-memx/index ([#780](https://www.github.com/snakemake/snakemake-wrappers/issues/780)) ([9937924](https://www.github.com/snakemake/snakemake-wrappers/commit/99379244427145af11182debb3017a8a8c6764e5)) * autobump bio/cooltools/eigs_cis ([#853](https://www.github.com/snakemake/snakemake-wrappers/issues/853)) ([3973951](https://www.github.com/snakemake/snakemake-wrappers/commit/3973951806c9cf0fd89c9149b4d77723aebeb977)) * autobump bio/cooltools/eigs_trans ([#777](https://www.github.com/snakemake/snakemake-wrappers/issues/777)) ([348c67d](https://www.github.com/snakemake/snakemake-wrappers/commit/348c67dfef15f52063e0d8004ab7f9540effbb96)) * autobump bio/dada2/collapse-nomismatch ([#852](https://www.github.com/snakemake/snakemake-wrappers/issues/852)) ([2ab7b64](https://www.github.com/snakemake/snakemake-wrappers/commit/2ab7b647ac3a6c6f6455715bd596822926fe7cfe)) * autobump bio/dada2/dereplicate-fastq ([#808](https://www.github.com/snakemake/snakemake-wrappers/issues/808)) ([c0692ff](https://www.github.com/snakemake/snakemake-wrappers/commit/c0692ff1eb37e3ee7a456d4b1d064d3a648e86e4)) * autobump bio/dada2/make-table ([#796](https://www.github.com/snakemake/snakemake-wrappers/issues/796)) ([a42557f](https://www.github.com/snakemake/snakemake-wrappers/commit/a42557f1696125bbd16cc51c3538d30bf6151c62)) * autobump bio/dada2/merge-pairs ([#847](https://www.github.com/snakemake/snakemake-wrappers/issues/847)) ([67a8ee6](https://www.github.com/snakemake/snakemake-wrappers/commit/67a8ee600836c2376b6d1ebf3705b0864127b2dd)) * autobump bio/dada2/remove-chimeras ([#776](https://www.github.com/snakemake/snakemake-wrappers/issues/776)) ([2da85cc](https://www.github.com/snakemake/snakemake-wrappers/commit/2da85cc4d8ed68f16eb2adcc79a819448444bb5c)) * autobump bio/deeptools/plotheatmap ([#864](https://www.github.com/snakemake/snakemake-wrappers/issues/864)) ([1eea5f0](https://www.github.com/snakemake/snakemake-wrappers/commit/1eea5f04c7136842812379c34fd1871260e6a79e)) * autobump bio/diamond/blastx ([#875](https://www.github.com/snakemake/snakemake-wrappers/issues/875)) ([a503669](https://www.github.com/snakemake/snakemake-wrappers/commit/a503669257059cdcce4e5fa4ce17be6e1e0f6bd0)) * autobump bio/epic/peaks ([#781](https://www.github.com/snakemake/snakemake-wrappers/issues/781)) ([400c8ce](https://www.github.com/snakemake/snakemake-wrappers/commit/400c8ceeb223913cac333da6bef9cf156593cc0a)) * autobump bio/fgbio/callmolecularconsensusreads ([#826](https://www.github.com/snakemake/snakemake-wrappers/issues/826)) ([194056e](https://www.github.com/snakemake/snakemake-wrappers/commit/194056e9b19e5a50ff7439bc844f0c0f5678de29)) * autobump bio/fgbio/filterconsensusreads ([#801](https://www.github.com/snakemake/snakemake-wrappers/issues/801)) ([491eed9](https://www.github.com/snakemake/snakemake-wrappers/commit/491eed92cbfff12c9433774819717e87247eeca7)) * autobump bio/gatk/applybqsr ([#803](https://www.github.com/snakemake/snakemake-wrappers/issues/803)) ([d27cc85](https://www.github.com/snakemake/snakemake-wrappers/commit/d27cc85bb85b57e5759d8f9fde73129d8ead96a8)) * autobump bio/gatk/applyvqsr ([#858](https://www.github.com/snakemake/snakemake-wrappers/issues/858)) ([202ab9f](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab9f4b950849ed8ae51b28facc9f162ab13dc)) * autobump bio/gatk/baserecalibrator ([#820](https://www.github.com/snakemake/snakemake-wrappers/issues/820)) ([20e258c](https://www.github.com/snakemake/snakemake-wrappers/commit/20e258c4c6418cbafc20a901e4529e8c87ec26bf)) * autobump bio/gatk/combinegvcfs ([#811](https://www.github.com/snakemake/snakemake-wrappers/issues/811)) ([6b27084](https://www.github.com/snakemake/snakemake-wrappers/commit/6b2708449daa7d3ab9f5873cec1ee52853a9fcaf)) * autobump bio/gatk/filtermutectcalls ([#845](https://www.github.com/snakemake/snakemake-wrappers/issues/845)) ([15de736](https://www.github.com/snakemake/snakemake-wrappers/commit/15de736111357384912b03e55e4b55e99a9e2e75)) * autobump bio/gatk/getpileupsummaries ([#866](https://www.github.com/snakemake/snakemake-wrappers/issues/866)) ([ae118d0](https://www.github.com/snakemake/snakemake-wrappers/commit/ae118d029ae2311370bf5520f307d106810e21b7)) * autobump bio/gatk/learnreadorientationmodel ([#854](https://www.github.com/snakemake/snakemake-wrappers/issues/854)) ([82d03d5](https://www.github.com/snakemake/snakemake-wrappers/commit/82d03d56b410afe96a8017dae92ad6a5d2bffe8f)) * autobump bio/gatk/splitncigarreads ([#790](https://www.github.com/snakemake/snakemake-wrappers/issues/790)) ([a7a890b](https://www.github.com/snakemake/snakemake-wrappers/commit/a7a890bc2fa0d253ad427b3bd5237aa4b4221f26)) * autobump bio/gatk3/indelrealigner ([#827](https://www.github.com/snakemake/snakemake-wrappers/issues/827)) ([a0793af](https://www.github.com/snakemake/snakemake-wrappers/commit/a0793aff88f8ae11bd33a8645e70d68c632718cd)) * autobump bio/gatk3/printreads ([#806](https://www.github.com/snakemake/snakemake-wrappers/issues/806)) ([998852c](https://www.github.com/snakemake/snakemake-wrappers/commit/998852c4f4d0254c409d72fe353e95f02ae6c5b1)) * autobump bio/gatk3/realignertargetcreator ([#865](https://www.github.com/snakemake/snakemake-wrappers/issues/865)) ([b76bd75](https://www.github.com/snakemake/snakemake-wrappers/commit/b76bd7537bcd5c132158857945b6e7dff421a9dd)) * autobump bio/gridss/call ([#846](https://www.github.com/snakemake/snakemake-wrappers/issues/846)) ([01b3056](https://www.github.com/snakemake/snakemake-wrappers/commit/01b30560fe2c4cd3ec65cf7a7fc04ac7340eaf18)) * autobump bio/hisat2/index ([#815](https://www.github.com/snakemake/snakemake-wrappers/issues/815)) ([3c13af5](https://www.github.com/snakemake/snakemake-wrappers/commit/3c13af55cc5a7afe40d52313268a90be73bc2f89)) * autobump bio/hmmer/hmmpress ([#779](https://www.github.com/snakemake/snakemake-wrappers/issues/779)) ([d08c5fd](https://www.github.com/snakemake/snakemake-wrappers/commit/d08c5fd2fd7ca2cd551e9366bde2f4d42ebf726a)) * autobump bio/jellyfish/histo ([#818](https://www.github.com/snakemake/snakemake-wrappers/issues/818)) ([0dd35bc](https://www.github.com/snakemake/snakemake-wrappers/commit/0dd35bc7697a5a0babaccc4df4786bb36b94feb0)) * autobump bio/jellyfish/merge ([#861](https://www.github.com/snakemake/snakemake-wrappers/issues/861)) ([278a80e](https://www.github.com/snakemake/snakemake-wrappers/commit/278a80e363641341991a259df67ded624da228b5)) * autobump bio/kallisto/quant ([#821](https://www.github.com/snakemake/snakemake-wrappers/issues/821)) ([af4128c](https://www.github.com/snakemake/snakemake-wrappers/commit/af4128ccfbdcccd5cedf52a7abfdab5b8c7fb77d)) * autobump bio/lofreq/call ([#872](https://www.github.com/snakemake/snakemake-wrappers/issues/872)) ([000eb6e](https://www.github.com/snakemake/snakemake-wrappers/commit/000eb6e5e119d5d52fd39320c80cb7f963740f36)) * autobump bio/macs2/callpeak ([#810](https://www.github.com/snakemake/snakemake-wrappers/issues/810)) ([9fe846b](https://www.github.com/snakemake/snakemake-wrappers/commit/9fe846b2748fad337b93ae308a45ae72759520fb)) * autobump bio/meryl/sets ([#783](https://www.github.com/snakemake/snakemake-wrappers/issues/783)) ([f8bec12](https://www.github.com/snakemake/snakemake-wrappers/commit/f8bec126c49e72cd04c913d9bd2b71f69da459a3)) * autobump bio/meryl/stats ([#785](https://www.github.com/snakemake/snakemake-wrappers/issues/785)) ([bfae5c5](https://www.github.com/snakemake/snakemake-wrappers/commit/bfae5c552536a538921c9015c5ff8c5f27ff9ae3)) * autobump bio/microphaser/build_reference ([#823](https://www.github.com/snakemake/snakemake-wrappers/issues/823)) ([7a79754](https://www.github.com/snakemake/snakemake-wrappers/commit/7a79754a8ca6d1837bdf01337bcd5aa1cd118938)) * autobump bio/msisensor/msi ([#850](https://www.github.com/snakemake/snakemake-wrappers/issues/850)) ([7d605a0](https://www.github.com/snakemake/snakemake-wrappers/commit/7d605a0a91f36b82ce106a40643c2af700babbc1)) * autobump bio/msisensor/scan ([#842](https://www.github.com/snakemake/snakemake-wrappers/issues/842)) ([1db9fe6](https://www.github.com/snakemake/snakemake-wrappers/commit/1db9fe6662b818fcd9dd7cf4367004c82b90408a)) * autobump bio/open-cravat/module ([#782](https://www.github.com/snakemake/snakemake-wrappers/issues/782)) ([996fe01](https://www.github.com/snakemake/snakemake-wrappers/commit/996fe0152632c98a279f58897e0979110efd6336)) * autobump bio/open-cravat/run ([#807](https://www.github.com/snakemake/snakemake-wrappers/issues/807)) ([70c6500](https://www.github.com/snakemake/snakemake-wrappers/commit/70c65004cd77eba2c05267c68c367e7351f128b7)) * autobump bio/pandora/index ([#805](https://www.github.com/snakemake/snakemake-wrappers/issues/805)) ([8c9ea62](https://www.github.com/snakemake/snakemake-wrappers/commit/8c9ea624e2c2690413a8f241766f32dc389adb2f)) * autobump bio/picard/collecthsmetrics ([#788](https://www.github.com/snakemake/snakemake-wrappers/issues/788)) ([0220a41](https://www.github.com/snakemake/snakemake-wrappers/commit/0220a4174c459dad5c9c9175f92d42849ac1de82)) * autobump bio/picard/revertsam ([#874](https://www.github.com/snakemake/snakemake-wrappers/issues/874)) ([c811ef5](https://www.github.com/snakemake/snakemake-wrappers/commit/c811ef5fe714a078963b5fbd518c4ed4cca79966)) * autobump bio/picard/sortsam ([#822](https://www.github.com/snakemake/snakemake-wrappers/issues/822)) ([30f468d](https://www.github.com/snakemake/snakemake-wrappers/commit/30f468d2fef33fdf9b4bda5f1ed41553a89b5cd4)) * autobump bio/preseq/lc_extrap ([#840](https://www.github.com/snakemake/snakemake-wrappers/issues/840)) ([d0ec0bb](https://www.github.com/snakemake/snakemake-wrappers/commit/d0ec0bbfd28920050862778cae6a2cdc0bad8581)) * autobump bio/pretext/map ([#841](https://www.github.com/snakemake/snakemake-wrappers/issues/841)) ([0a0193c](https://www.github.com/snakemake/snakemake-wrappers/commit/0a0193ccf59f1393100125feca9678fd9b976ad2)) * autobump bio/pretext/snapshot ([#843](https://www.github.com/snakemake/snakemake-wrappers/issues/843)) ([4d3a224](https://www.github.com/snakemake/snakemake-wrappers/commit/4d3a2247d2f90ac640de4b634f0743e3efbc609b)) * autobump bio/prosolo/single-cell-bulk ([#870](https://www.github.com/snakemake/snakemake-wrappers/issues/870)) ([da52ad6](https://www.github.com/snakemake/snakemake-wrappers/commit/da52ad6d014a4bc5a6ea1f77bcbdfcc3282687ca)) * autobump bio/purge_dups/calcuts ([#793](https://www.github.com/snakemake/snakemake-wrappers/issues/793)) ([95f421c](https://www.github.com/snakemake/snakemake-wrappers/commit/95f421c00987f12581a178bb60ba9d9209e296c8)) * autobump bio/purge_dups/ngscstat ([#791](https://www.github.com/snakemake/snakemake-wrappers/issues/791)) ([a7d6ef9](https://www.github.com/snakemake/snakemake-wrappers/commit/a7d6ef986ef98a7e86adfc629617d840d02b722d)) * autobump bio/purge_dups/pbcstat ([#787](https://www.github.com/snakemake/snakemake-wrappers/issues/787)) ([3775e6a](https://www.github.com/snakemake/snakemake-wrappers/commit/3775e6a9b9b22889bf9db8bae0bb03478ff9d718)) * autobump bio/rbt/collapse_reads_to_fragments-bam ([#794](https://www.github.com/snakemake/snakemake-wrappers/issues/794)) ([2eb9983](https://www.github.com/snakemake/snakemake-wrappers/commit/2eb998301b1a9b4ceb0b41ad050ad5cbec6728eb)) * autobump bio/rbt/csvreport ([#838](https://www.github.com/snakemake/snakemake-wrappers/issues/838)) ([eea403e](https://www.github.com/snakemake/snakemake-wrappers/commit/eea403e36648e6d13d14c0ccf0e1ba4a3f6f30a7)) * autobump bio/rsem/generate-data-matrix ([#828](https://www.github.com/snakemake/snakemake-wrappers/issues/828)) ([e16d591](https://www.github.com/snakemake/snakemake-wrappers/commit/e16d591cef368c22aee51d4e1964f39aeef8b1e6)) * autobump bio/sambamba/markdup ([#814](https://www.github.com/snakemake/snakemake-wrappers/issues/814)) ([0cd1c99](https://www.github.com/snakemake/snakemake-wrappers/commit/0cd1c993ce538ffc854b2a3b080dcc463811223c)) * autobump bio/sambamba/merge ([#839](https://www.github.com/snakemake/snakemake-wrappers/issues/839)) ([b81e778](https://www.github.com/snakemake/snakemake-wrappers/commit/b81e77835cee48a5d7ef5ec083f3d0aec9e9ad29)) * autobump bio/sambamba/sort ([#784](https://www.github.com/snakemake/snakemake-wrappers/issues/784)) ([6252efd](https://www.github.com/snakemake/snakemake-wrappers/commit/6252efdcf60ea7567c33a9b87ad30d9bc66bb206)) * autobump bio/samtools/faidx ([#859](https://www.github.com/snakemake/snakemake-wrappers/issues/859)) ([cbdae53](https://www.github.com/snakemake/snakemake-wrappers/commit/cbdae53cc73d96de1ef6e966a31b8deeef4c005c)) * autobump bio/samtools/fastx ([#855](https://www.github.com/snakemake/snakemake-wrappers/issues/855)) ([509c570](https://www.github.com/snakemake/snakemake-wrappers/commit/509c5708df7bc8d6c63a7c8b6904c9f36b82710c)) * autobump bio/samtools/fixmate ([#774](https://www.github.com/snakemake/snakemake-wrappers/issues/774)) ([bb28da9](https://www.github.com/snakemake/snakemake-wrappers/commit/bb28da9ea03ded3081afa3b09a77f06363a3347d)) * autobump bio/samtools/merge ([#844](https://www.github.com/snakemake/snakemake-wrappers/issues/844)) ([5905d2e](https://www.github.com/snakemake/snakemake-wrappers/commit/5905d2e2ff9952e5e32f610e93843a73efea7931)) * autobump bio/samtools/mpileup ([#829](https://www.github.com/snakemake/snakemake-wrappers/issues/829)) ([d5120cb](https://www.github.com/snakemake/snakemake-wrappers/commit/d5120cbe1fc9ffc22cc6dd6dd0a102bc201b06f0)) * autobump bio/samtools/stats ([#797](https://www.github.com/snakemake/snakemake-wrappers/issues/797)) ([524db3e](https://www.github.com/snakemake/snakemake-wrappers/commit/524db3ef71aaf966a61781c5fb4106be229c2fc7)) * autobump bio/sickle/se ([#786](https://www.github.com/snakemake/snakemake-wrappers/issues/786)) ([ef4a4ad](https://www.github.com/snakemake/snakemake-wrappers/commit/ef4a4ad3beacab30b78cc4c440e7186bdab3a6bc)) * autobump bio/snpeff/download ([#851](https://www.github.com/snakemake/snakemake-wrappers/issues/851)) ([3bc7aa5](https://www.github.com/snakemake/snakemake-wrappers/commit/3bc7aa5a18fc5f7a28b284bcae65204586e38488)) * autobump bio/snpsift/dbnsfp ([#856](https://www.github.com/snakemake/snakemake-wrappers/issues/856)) ([67ed70a](https://www.github.com/snakemake/snakemake-wrappers/commit/67ed70a33518b8f7453cb243bc19c0976f31525b)) * autobump bio/snpsift/genesets ([#799](https://www.github.com/snakemake/snakemake-wrappers/issues/799)) ([251fd82](https://www.github.com/snakemake/snakemake-wrappers/commit/251fd822694d089237411cd2d3d95163a27450bd)) * autobump bio/sourmash/compute ([#795](https://www.github.com/snakemake/snakemake-wrappers/issues/795)) ([e063ce8](https://www.github.com/snakemake/snakemake-wrappers/commit/e063ce88ceb4a37ed4cb90a58ef7dc3a9f4775e3)) * autobump bio/spades/metaspades ([#860](https://www.github.com/snakemake/snakemake-wrappers/issues/860)) ([983754f](https://www.github.com/snakemake/snakemake-wrappers/commit/983754f7386aecbc2f0dd2921a47f7034e41ae80)) * autobump bio/sra-tools/fasterq-dump ([#873](https://www.github.com/snakemake/snakemake-wrappers/issues/873)) ([5914529](https://www.github.com/snakemake/snakemake-wrappers/commit/59145293bb2e52ca438289d1881b75dd8ea649cf)) * autobump bio/strelka/somatic ([#813](https://www.github.com/snakemake/snakemake-wrappers/issues/813)) ([d52a2ad](https://www.github.com/snakemake/snakemake-wrappers/commit/d52a2ad6aee1b1ef74ddb6805f6d8535c27e3e0e)) * autobump bio/strling/call ([#789](https://www.github.com/snakemake/snakemake-wrappers/issues/789)) ([9fa5f86](https://www.github.com/snakemake/snakemake-wrappers/commit/9fa5f8615769e7ce4d8f1ab7b36bea1978bf834a)) * autobump bio/strling/extract ([#876](https://www.github.com/snakemake/snakemake-wrappers/issues/876)) ([45152e6](https://www.github.com/snakemake/snakemake-wrappers/commit/45152e6a31d733cdb358d09f39df97227bec45e6)) * autobump bio/strling/index ([#809](https://www.github.com/snakemake/snakemake-wrappers/issues/809)) ([9472934](https://www.github.com/snakemake/snakemake-wrappers/commit/9472934c6b1dfdb2a752b80ae5019cf812f492b6)) * autobump bio/strling/merge ([#824](https://www.github.com/snakemake/snakemake-wrappers/issues/824)) ([82cc5a7](https://www.github.com/snakemake/snakemake-wrappers/commit/82cc5a75d4ace1c58fb0245cc77a7d57cb02af0d)) * autobump bio/tabix/index ([#863](https://www.github.com/snakemake/snakemake-wrappers/issues/863)) ([9de5e3c](https://www.github.com/snakemake/snakemake-wrappers/commit/9de5e3c3b88774bbecb7dc33f8002501e1a7a61c)) * autobump bio/tabix/query ([#868](https://www.github.com/snakemake/snakemake-wrappers/issues/868)) ([088f3db](https://www.github.com/snakemake/snakemake-wrappers/commit/088f3db257b55cbc15ce9aedc6c892547917a0cf)) * autobump bio/ucsc/bedGraphToBigWig ([#825](https://www.github.com/snakemake/snakemake-wrappers/issues/825)) ([c72f046](https://www.github.com/snakemake/snakemake-wrappers/commit/c72f046e5579ca1975afc13de5dd21c38eb7da4f)) * autobump bio/ucsc/gtfToGenePred ([#802](https://www.github.com/snakemake/snakemake-wrappers/issues/802)) ([b306b81](https://www.github.com/snakemake/snakemake-wrappers/commit/b306b8141e3ca984b57c8ba445c96a3a216907b7)) * autobump bio/varscan/mpileup2snp ([#849](https://www.github.com/snakemake/snakemake-wrappers/issues/849)) ([300738b](https://www.github.com/snakemake/snakemake-wrappers/commit/300738b4abf4ac547202a3e01826403b2ee998be)) * autobump bio/vcftools/filter ([#804](https://www.github.com/snakemake/snakemake-wrappers/issues/804)) ([a18db0a](https://www.github.com/snakemake/snakemake-wrappers/commit/a18db0a1b953ad1b844f29403e873c50a985ddd7)) * autobump bio/vep/annotate ([#857](https://www.github.com/snakemake/snakemake-wrappers/issues/857)) ([84bd8bd](https://www.github.com/snakemake/snakemake-wrappers/commit/84bd8bd9ac30e68250eaafbc79455ef1f4b2cd46)) * autobump bio/vep/cache ([#741](https://www.github.com/snakemake/snakemake-wrappers/issues/741)) ([ef12aed](https://www.github.com/snakemake/snakemake-wrappers/commit/ef12aed70413f4bdace81923cf1ab650b24f27ed)) * autobump bio/vg/ids ([#871](https://www.github.com/snakemake/snakemake-wrappers/issues/871)) ([10a1c0d](https://www.github.com/snakemake/snakemake-wrappers/commit/10a1c0de13ef61b9896a4be1134f36538f6602f1)) * autobump bio/vg/merge ([#867](https://www.github.com/snakemake/snakemake-wrappers/issues/867)) ([064ca8c](https://www.github.com/snakemake/snakemake-wrappers/commit/064ca8c086e6ddc6e821b941da621d4dcac6846c)) * autobump bio/vg/prune ([#817](https://www.github.com/snakemake/snakemake-wrappers/issues/817)) ([104775a](https://www.github.com/snakemake/snakemake-wrappers/commit/104775ab5b03628d2cb6a6ea42b76df24476de5c)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic update of bio/gatk3/indelrealigner. Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com> Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>
Phlya
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🤖 I have created a release \*beep\* \*boop\* --- ### [1.19.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.19.0...v1.19.1) (2022-11-11) ### Performance Improvements * autobump bio/bismark/bismark_genome_preparation ([snakemake#819](https://www.github.com/snakemake/snakemake-wrappers/issues/819)) ([1da1afc](https://www.github.com/snakemake/snakemake-wrappers/commit/1da1afc6c616b0376f5bd61269fd584d932e7527)) * autobump bio/bismark/bismark2report ([snakemake#812](https://www.github.com/snakemake/snakemake-wrappers/issues/812)) ([8ce5b1a](https://www.github.com/snakemake/snakemake-wrappers/commit/8ce5b1a4d2de950261237a1aafd8572eef778ef4)) * autobump bio/bismark/deduplicate_bismark ([snakemake#816](https://www.github.com/snakemake/snakemake-wrappers/issues/816)) ([7f539c4](https://www.github.com/snakemake/snakemake-wrappers/commit/7f539c4ac6f743fbe9e584b9e78efa35388ac82c)) * autobump bio/bowtie2/align ([snakemake#798](https://www.github.com/snakemake/snakemake-wrappers/issues/798)) ([6fa3cc7](https://www.github.com/snakemake/snakemake-wrappers/commit/6fa3cc7cad4a1c38b9e7107a55505586909a0904)) * autobump bio/bwa-meme/index ([snakemake#862](https://www.github.com/snakemake/snakemake-wrappers/issues/862)) ([68f9c48](https://www.github.com/snakemake/snakemake-wrappers/commit/68f9c480bdef3a053c09fa2eafa46e710e91762a)) * autobump bio/bwa-memx/index ([snakemake#780](https://www.github.com/snakemake/snakemake-wrappers/issues/780)) ([9937924](https://www.github.com/snakemake/snakemake-wrappers/commit/99379244427145af11182debb3017a8a8c6764e5)) * autobump bio/cooltools/eigs_cis ([snakemake#853](https://www.github.com/snakemake/snakemake-wrappers/issues/853)) ([3973951](https://www.github.com/snakemake/snakemake-wrappers/commit/3973951806c9cf0fd89c9149b4d77723aebeb977)) * autobump bio/cooltools/eigs_trans ([snakemake#777](https://www.github.com/snakemake/snakemake-wrappers/issues/777)) ([348c67d](https://www.github.com/snakemake/snakemake-wrappers/commit/348c67dfef15f52063e0d8004ab7f9540effbb96)) * autobump bio/dada2/collapse-nomismatch ([snakemake#852](https://www.github.com/snakemake/snakemake-wrappers/issues/852)) ([2ab7b64](https://www.github.com/snakemake/snakemake-wrappers/commit/2ab7b647ac3a6c6f6455715bd596822926fe7cfe)) * autobump bio/dada2/dereplicate-fastq ([snakemake#808](https://www.github.com/snakemake/snakemake-wrappers/issues/808)) ([c0692ff](https://www.github.com/snakemake/snakemake-wrappers/commit/c0692ff1eb37e3ee7a456d4b1d064d3a648e86e4)) * autobump bio/dada2/make-table ([snakemake#796](https://www.github.com/snakemake/snakemake-wrappers/issues/796)) ([a42557f](https://www.github.com/snakemake/snakemake-wrappers/commit/a42557f1696125bbd16cc51c3538d30bf6151c62)) * autobump bio/dada2/merge-pairs ([snakemake#847](https://www.github.com/snakemake/snakemake-wrappers/issues/847)) ([67a8ee6](https://www.github.com/snakemake/snakemake-wrappers/commit/67a8ee600836c2376b6d1ebf3705b0864127b2dd)) * autobump bio/dada2/remove-chimeras ([snakemake#776](https://www.github.com/snakemake/snakemake-wrappers/issues/776)) ([2da85cc](https://www.github.com/snakemake/snakemake-wrappers/commit/2da85cc4d8ed68f16eb2adcc79a819448444bb5c)) * autobump bio/deeptools/plotheatmap ([snakemake#864](https://www.github.com/snakemake/snakemake-wrappers/issues/864)) ([1eea5f0](https://www.github.com/snakemake/snakemake-wrappers/commit/1eea5f04c7136842812379c34fd1871260e6a79e)) * autobump bio/diamond/blastx ([snakemake#875](https://www.github.com/snakemake/snakemake-wrappers/issues/875)) ([a503669](https://www.github.com/snakemake/snakemake-wrappers/commit/a503669257059cdcce4e5fa4ce17be6e1e0f6bd0)) * autobump bio/epic/peaks ([snakemake#781](https://www.github.com/snakemake/snakemake-wrappers/issues/781)) ([400c8ce](https://www.github.com/snakemake/snakemake-wrappers/commit/400c8ceeb223913cac333da6bef9cf156593cc0a)) * autobump bio/fgbio/callmolecularconsensusreads ([snakemake#826](https://www.github.com/snakemake/snakemake-wrappers/issues/826)) ([194056e](https://www.github.com/snakemake/snakemake-wrappers/commit/194056e9b19e5a50ff7439bc844f0c0f5678de29)) * autobump bio/fgbio/filterconsensusreads ([snakemake#801](https://www.github.com/snakemake/snakemake-wrappers/issues/801)) ([491eed9](https://www.github.com/snakemake/snakemake-wrappers/commit/491eed92cbfff12c9433774819717e87247eeca7)) * autobump bio/gatk/applybqsr ([snakemake#803](https://www.github.com/snakemake/snakemake-wrappers/issues/803)) ([d27cc85](https://www.github.com/snakemake/snakemake-wrappers/commit/d27cc85bb85b57e5759d8f9fde73129d8ead96a8)) * autobump bio/gatk/applyvqsr ([snakemake#858](https://www.github.com/snakemake/snakemake-wrappers/issues/858)) ([202ab9f](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab9f4b950849ed8ae51b28facc9f162ab13dc)) * autobump bio/gatk/baserecalibrator ([snakemake#820](https://www.github.com/snakemake/snakemake-wrappers/issues/820)) ([20e258c](https://www.github.com/snakemake/snakemake-wrappers/commit/20e258c4c6418cbafc20a901e4529e8c87ec26bf)) * autobump bio/gatk/combinegvcfs ([snakemake#811](https://www.github.com/snakemake/snakemake-wrappers/issues/811)) ([6b27084](https://www.github.com/snakemake/snakemake-wrappers/commit/6b2708449daa7d3ab9f5873cec1ee52853a9fcaf)) * autobump bio/gatk/filtermutectcalls ([snakemake#845](https://www.github.com/snakemake/snakemake-wrappers/issues/845)) ([15de736](https://www.github.com/snakemake/snakemake-wrappers/commit/15de736111357384912b03e55e4b55e99a9e2e75)) * autobump bio/gatk/getpileupsummaries ([snakemake#866](https://www.github.com/snakemake/snakemake-wrappers/issues/866)) ([ae118d0](https://www.github.com/snakemake/snakemake-wrappers/commit/ae118d029ae2311370bf5520f307d106810e21b7)) * autobump bio/gatk/learnreadorientationmodel ([snakemake#854](https://www.github.com/snakemake/snakemake-wrappers/issues/854)) ([82d03d5](https://www.github.com/snakemake/snakemake-wrappers/commit/82d03d56b410afe96a8017dae92ad6a5d2bffe8f)) * autobump bio/gatk/splitncigarreads ([snakemake#790](https://www.github.com/snakemake/snakemake-wrappers/issues/790)) ([a7a890b](https://www.github.com/snakemake/snakemake-wrappers/commit/a7a890bc2fa0d253ad427b3bd5237aa4b4221f26)) * autobump bio/gatk3/indelrealigner ([snakemake#827](https://www.github.com/snakemake/snakemake-wrappers/issues/827)) ([a0793af](https://www.github.com/snakemake/snakemake-wrappers/commit/a0793aff88f8ae11bd33a8645e70d68c632718cd)) * autobump bio/gatk3/printreads ([snakemake#806](https://www.github.com/snakemake/snakemake-wrappers/issues/806)) ([998852c](https://www.github.com/snakemake/snakemake-wrappers/commit/998852c4f4d0254c409d72fe353e95f02ae6c5b1)) * autobump bio/gatk3/realignertargetcreator ([snakemake#865](https://www.github.com/snakemake/snakemake-wrappers/issues/865)) ([b76bd75](https://www.github.com/snakemake/snakemake-wrappers/commit/b76bd7537bcd5c132158857945b6e7dff421a9dd)) * autobump bio/gridss/call ([snakemake#846](https://www.github.com/snakemake/snakemake-wrappers/issues/846)) ([01b3056](https://www.github.com/snakemake/snakemake-wrappers/commit/01b30560fe2c4cd3ec65cf7a7fc04ac7340eaf18)) * autobump bio/hisat2/index ([snakemake#815](https://www.github.com/snakemake/snakemake-wrappers/issues/815)) ([3c13af5](https://www.github.com/snakemake/snakemake-wrappers/commit/3c13af55cc5a7afe40d52313268a90be73bc2f89)) * autobump bio/hmmer/hmmpress ([snakemake#779](https://www.github.com/snakemake/snakemake-wrappers/issues/779)) ([d08c5fd](https://www.github.com/snakemake/snakemake-wrappers/commit/d08c5fd2fd7ca2cd551e9366bde2f4d42ebf726a)) * autobump bio/jellyfish/histo ([snakemake#818](https://www.github.com/snakemake/snakemake-wrappers/issues/818)) ([0dd35bc](https://www.github.com/snakemake/snakemake-wrappers/commit/0dd35bc7697a5a0babaccc4df4786bb36b94feb0)) * autobump bio/jellyfish/merge ([snakemake#861](https://www.github.com/snakemake/snakemake-wrappers/issues/861)) ([278a80e](https://www.github.com/snakemake/snakemake-wrappers/commit/278a80e363641341991a259df67ded624da228b5)) * autobump bio/kallisto/quant ([snakemake#821](https://www.github.com/snakemake/snakemake-wrappers/issues/821)) ([af4128c](https://www.github.com/snakemake/snakemake-wrappers/commit/af4128ccfbdcccd5cedf52a7abfdab5b8c7fb77d)) * autobump bio/lofreq/call ([snakemake#872](https://www.github.com/snakemake/snakemake-wrappers/issues/872)) ([000eb6e](https://www.github.com/snakemake/snakemake-wrappers/commit/000eb6e5e119d5d52fd39320c80cb7f963740f36)) * autobump bio/macs2/callpeak ([snakemake#810](https://www.github.com/snakemake/snakemake-wrappers/issues/810)) ([9fe846b](https://www.github.com/snakemake/snakemake-wrappers/commit/9fe846b2748fad337b93ae308a45ae72759520fb)) * autobump bio/meryl/sets ([snakemake#783](https://www.github.com/snakemake/snakemake-wrappers/issues/783)) ([f8bec12](https://www.github.com/snakemake/snakemake-wrappers/commit/f8bec126c49e72cd04c913d9bd2b71f69da459a3)) * autobump bio/meryl/stats ([snakemake#785](https://www.github.com/snakemake/snakemake-wrappers/issues/785)) ([bfae5c5](https://www.github.com/snakemake/snakemake-wrappers/commit/bfae5c552536a538921c9015c5ff8c5f27ff9ae3)) * autobump bio/microphaser/build_reference ([snakemake#823](https://www.github.com/snakemake/snakemake-wrappers/issues/823)) ([7a79754](https://www.github.com/snakemake/snakemake-wrappers/commit/7a79754a8ca6d1837bdf01337bcd5aa1cd118938)) * autobump bio/msisensor/msi ([snakemake#850](https://www.github.com/snakemake/snakemake-wrappers/issues/850)) ([7d605a0](https://www.github.com/snakemake/snakemake-wrappers/commit/7d605a0a91f36b82ce106a40643c2af700babbc1)) * autobump bio/msisensor/scan ([snakemake#842](https://www.github.com/snakemake/snakemake-wrappers/issues/842)) ([1db9fe6](https://www.github.com/snakemake/snakemake-wrappers/commit/1db9fe6662b818fcd9dd7cf4367004c82b90408a)) * autobump bio/open-cravat/module ([snakemake#782](https://www.github.com/snakemake/snakemake-wrappers/issues/782)) ([996fe01](https://www.github.com/snakemake/snakemake-wrappers/commit/996fe0152632c98a279f58897e0979110efd6336)) * autobump bio/open-cravat/run ([snakemake#807](https://www.github.com/snakemake/snakemake-wrappers/issues/807)) ([70c6500](https://www.github.com/snakemake/snakemake-wrappers/commit/70c65004cd77eba2c05267c68c367e7351f128b7)) * autobump bio/pandora/index ([snakemake#805](https://www.github.com/snakemake/snakemake-wrappers/issues/805)) ([8c9ea62](https://www.github.com/snakemake/snakemake-wrappers/commit/8c9ea624e2c2690413a8f241766f32dc389adb2f)) * autobump bio/picard/collecthsmetrics ([snakemake#788](https://www.github.com/snakemake/snakemake-wrappers/issues/788)) ([0220a41](https://www.github.com/snakemake/snakemake-wrappers/commit/0220a4174c459dad5c9c9175f92d42849ac1de82)) * autobump bio/picard/revertsam ([snakemake#874](https://www.github.com/snakemake/snakemake-wrappers/issues/874)) ([c811ef5](https://www.github.com/snakemake/snakemake-wrappers/commit/c811ef5fe714a078963b5fbd518c4ed4cca79966)) * autobump bio/picard/sortsam ([snakemake#822](https://www.github.com/snakemake/snakemake-wrappers/issues/822)) ([30f468d](https://www.github.com/snakemake/snakemake-wrappers/commit/30f468d2fef33fdf9b4bda5f1ed41553a89b5cd4)) * autobump bio/preseq/lc_extrap ([snakemake#840](https://www.github.com/snakemake/snakemake-wrappers/issues/840)) ([d0ec0bb](https://www.github.com/snakemake/snakemake-wrappers/commit/d0ec0bbfd28920050862778cae6a2cdc0bad8581)) * autobump bio/pretext/map ([snakemake#841](https://www.github.com/snakemake/snakemake-wrappers/issues/841)) ([0a0193c](https://www.github.com/snakemake/snakemake-wrappers/commit/0a0193ccf59f1393100125feca9678fd9b976ad2)) * autobump bio/pretext/snapshot ([snakemake#843](https://www.github.com/snakemake/snakemake-wrappers/issues/843)) ([4d3a224](https://www.github.com/snakemake/snakemake-wrappers/commit/4d3a2247d2f90ac640de4b634f0743e3efbc609b)) * autobump bio/prosolo/single-cell-bulk ([snakemake#870](https://www.github.com/snakemake/snakemake-wrappers/issues/870)) ([da52ad6](https://www.github.com/snakemake/snakemake-wrappers/commit/da52ad6d014a4bc5a6ea1f77bcbdfcc3282687ca)) * autobump bio/purge_dups/calcuts ([snakemake#793](https://www.github.com/snakemake/snakemake-wrappers/issues/793)) ([95f421c](https://www.github.com/snakemake/snakemake-wrappers/commit/95f421c00987f12581a178bb60ba9d9209e296c8)) * autobump bio/purge_dups/ngscstat ([snakemake#791](https://www.github.com/snakemake/snakemake-wrappers/issues/791)) ([a7d6ef9](https://www.github.com/snakemake/snakemake-wrappers/commit/a7d6ef986ef98a7e86adfc629617d840d02b722d)) * autobump bio/purge_dups/pbcstat ([snakemake#787](https://www.github.com/snakemake/snakemake-wrappers/issues/787)) ([3775e6a](https://www.github.com/snakemake/snakemake-wrappers/commit/3775e6a9b9b22889bf9db8bae0bb03478ff9d718)) * autobump bio/rbt/collapse_reads_to_fragments-bam ([snakemake#794](https://www.github.com/snakemake/snakemake-wrappers/issues/794)) ([2eb9983](https://www.github.com/snakemake/snakemake-wrappers/commit/2eb998301b1a9b4ceb0b41ad050ad5cbec6728eb)) * autobump bio/rbt/csvreport ([snakemake#838](https://www.github.com/snakemake/snakemake-wrappers/issues/838)) ([eea403e](https://www.github.com/snakemake/snakemake-wrappers/commit/eea403e36648e6d13d14c0ccf0e1ba4a3f6f30a7)) * autobump bio/rsem/generate-data-matrix ([snakemake#828](https://www.github.com/snakemake/snakemake-wrappers/issues/828)) ([e16d591](https://www.github.com/snakemake/snakemake-wrappers/commit/e16d591cef368c22aee51d4e1964f39aeef8b1e6)) * autobump bio/sambamba/markdup ([snakemake#814](https://www.github.com/snakemake/snakemake-wrappers/issues/814)) ([0cd1c99](https://www.github.com/snakemake/snakemake-wrappers/commit/0cd1c993ce538ffc854b2a3b080dcc463811223c)) * autobump bio/sambamba/merge ([snakemake#839](https://www.github.com/snakemake/snakemake-wrappers/issues/839)) ([b81e778](https://www.github.com/snakemake/snakemake-wrappers/commit/b81e77835cee48a5d7ef5ec083f3d0aec9e9ad29)) * autobump bio/sambamba/sort ([snakemake#784](https://www.github.com/snakemake/snakemake-wrappers/issues/784)) ([6252efd](https://www.github.com/snakemake/snakemake-wrappers/commit/6252efdcf60ea7567c33a9b87ad30d9bc66bb206)) * autobump bio/samtools/faidx ([snakemake#859](https://www.github.com/snakemake/snakemake-wrappers/issues/859)) ([cbdae53](https://www.github.com/snakemake/snakemake-wrappers/commit/cbdae53cc73d96de1ef6e966a31b8deeef4c005c)) * autobump bio/samtools/fastx ([snakemake#855](https://www.github.com/snakemake/snakemake-wrappers/issues/855)) ([509c570](https://www.github.com/snakemake/snakemake-wrappers/commit/509c5708df7bc8d6c63a7c8b6904c9f36b82710c)) * autobump bio/samtools/fixmate ([snakemake#774](https://www.github.com/snakemake/snakemake-wrappers/issues/774)) ([bb28da9](https://www.github.com/snakemake/snakemake-wrappers/commit/bb28da9ea03ded3081afa3b09a77f06363a3347d)) * autobump bio/samtools/merge ([snakemake#844](https://www.github.com/snakemake/snakemake-wrappers/issues/844)) ([5905d2e](https://www.github.com/snakemake/snakemake-wrappers/commit/5905d2e2ff9952e5e32f610e93843a73efea7931)) * autobump bio/samtools/mpileup ([snakemake#829](https://www.github.com/snakemake/snakemake-wrappers/issues/829)) ([d5120cb](https://www.github.com/snakemake/snakemake-wrappers/commit/d5120cbe1fc9ffc22cc6dd6dd0a102bc201b06f0)) * autobump bio/samtools/stats ([snakemake#797](https://www.github.com/snakemake/snakemake-wrappers/issues/797)) ([524db3e](https://www.github.com/snakemake/snakemake-wrappers/commit/524db3ef71aaf966a61781c5fb4106be229c2fc7)) * autobump bio/sickle/se ([snakemake#786](https://www.github.com/snakemake/snakemake-wrappers/issues/786)) ([ef4a4ad](https://www.github.com/snakemake/snakemake-wrappers/commit/ef4a4ad3beacab30b78cc4c440e7186bdab3a6bc)) * autobump bio/snpeff/download ([snakemake#851](https://www.github.com/snakemake/snakemake-wrappers/issues/851)) ([3bc7aa5](https://www.github.com/snakemake/snakemake-wrappers/commit/3bc7aa5a18fc5f7a28b284bcae65204586e38488)) * autobump bio/snpsift/dbnsfp ([snakemake#856](https://www.github.com/snakemake/snakemake-wrappers/issues/856)) ([67ed70a](https://www.github.com/snakemake/snakemake-wrappers/commit/67ed70a33518b8f7453cb243bc19c0976f31525b)) * autobump bio/snpsift/genesets ([snakemake#799](https://www.github.com/snakemake/snakemake-wrappers/issues/799)) ([251fd82](https://www.github.com/snakemake/snakemake-wrappers/commit/251fd822694d089237411cd2d3d95163a27450bd)) * autobump bio/sourmash/compute ([snakemake#795](https://www.github.com/snakemake/snakemake-wrappers/issues/795)) ([e063ce8](https://www.github.com/snakemake/snakemake-wrappers/commit/e063ce88ceb4a37ed4cb90a58ef7dc3a9f4775e3)) * autobump bio/spades/metaspades ([snakemake#860](https://www.github.com/snakemake/snakemake-wrappers/issues/860)) ([983754f](https://www.github.com/snakemake/snakemake-wrappers/commit/983754f7386aecbc2f0dd2921a47f7034e41ae80)) * autobump bio/sra-tools/fasterq-dump ([snakemake#873](https://www.github.com/snakemake/snakemake-wrappers/issues/873)) ([5914529](https://www.github.com/snakemake/snakemake-wrappers/commit/59145293bb2e52ca438289d1881b75dd8ea649cf)) * autobump bio/strelka/somatic ([snakemake#813](https://www.github.com/snakemake/snakemake-wrappers/issues/813)) ([d52a2ad](https://www.github.com/snakemake/snakemake-wrappers/commit/d52a2ad6aee1b1ef74ddb6805f6d8535c27e3e0e)) * autobump bio/strling/call ([snakemake#789](https://www.github.com/snakemake/snakemake-wrappers/issues/789)) ([9fa5f86](https://www.github.com/snakemake/snakemake-wrappers/commit/9fa5f8615769e7ce4d8f1ab7b36bea1978bf834a)) * autobump bio/strling/extract ([snakemake#876](https://www.github.com/snakemake/snakemake-wrappers/issues/876)) ([45152e6](https://www.github.com/snakemake/snakemake-wrappers/commit/45152e6a31d733cdb358d09f39df97227bec45e6)) * autobump bio/strling/index ([snakemake#809](https://www.github.com/snakemake/snakemake-wrappers/issues/809)) ([9472934](https://www.github.com/snakemake/snakemake-wrappers/commit/9472934c6b1dfdb2a752b80ae5019cf812f492b6)) * autobump bio/strling/merge ([snakemake#824](https://www.github.com/snakemake/snakemake-wrappers/issues/824)) ([82cc5a7](https://www.github.com/snakemake/snakemake-wrappers/commit/82cc5a75d4ace1c58fb0245cc77a7d57cb02af0d)) * autobump bio/tabix/index ([snakemake#863](https://www.github.com/snakemake/snakemake-wrappers/issues/863)) ([9de5e3c](https://www.github.com/snakemake/snakemake-wrappers/commit/9de5e3c3b88774bbecb7dc33f8002501e1a7a61c)) * autobump bio/tabix/query ([snakemake#868](https://www.github.com/snakemake/snakemake-wrappers/issues/868)) ([088f3db](https://www.github.com/snakemake/snakemake-wrappers/commit/088f3db257b55cbc15ce9aedc6c892547917a0cf)) * autobump bio/ucsc/bedGraphToBigWig ([snakemake#825](https://www.github.com/snakemake/snakemake-wrappers/issues/825)) ([c72f046](https://www.github.com/snakemake/snakemake-wrappers/commit/c72f046e5579ca1975afc13de5dd21c38eb7da4f)) * autobump bio/ucsc/gtfToGenePred ([snakemake#802](https://www.github.com/snakemake/snakemake-wrappers/issues/802)) ([b306b81](https://www.github.com/snakemake/snakemake-wrappers/commit/b306b8141e3ca984b57c8ba445c96a3a216907b7)) * autobump bio/varscan/mpileup2snp ([snakemake#849](https://www.github.com/snakemake/snakemake-wrappers/issues/849)) ([300738b](https://www.github.com/snakemake/snakemake-wrappers/commit/300738b4abf4ac547202a3e01826403b2ee998be)) * autobump bio/vcftools/filter ([snakemake#804](https://www.github.com/snakemake/snakemake-wrappers/issues/804)) ([a18db0a](https://www.github.com/snakemake/snakemake-wrappers/commit/a18db0a1b953ad1b844f29403e873c50a985ddd7)) * autobump bio/vep/annotate ([snakemake#857](https://www.github.com/snakemake/snakemake-wrappers/issues/857)) ([84bd8bd](https://www.github.com/snakemake/snakemake-wrappers/commit/84bd8bd9ac30e68250eaafbc79455ef1f4b2cd46)) * autobump bio/vep/cache ([snakemake#741](https://www.github.com/snakemake/snakemake-wrappers/issues/741)) ([ef12aed](https://www.github.com/snakemake/snakemake-wrappers/commit/ef12aed70413f4bdace81923cf1ab650b24f27ed)) * autobump bio/vg/ids ([snakemake#871](https://www.github.com/snakemake/snakemake-wrappers/issues/871)) ([10a1c0d](https://www.github.com/snakemake/snakemake-wrappers/commit/10a1c0de13ef61b9896a4be1134f36538f6602f1)) * autobump bio/vg/merge ([snakemake#867](https://www.github.com/snakemake/snakemake-wrappers/issues/867)) ([064ca8c](https://www.github.com/snakemake/snakemake-wrappers/commit/064ca8c086e6ddc6e821b941da621d4dcac6846c)) * autobump bio/vg/prune ([snakemake#817](https://www.github.com/snakemake/snakemake-wrappers/issues/817)) ([104775a](https://www.github.com/snakemake/snakemake-wrappers/commit/104775ab5b03628d2cb6a6ea42b76df24476de5c)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic update of bio/gatk3/indelrealigner.