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fix: deeptools bamcoverage fix #2719

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merged 18 commits into from Apr 20, 2024
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jeffhsu3
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@jeffhsu3 jeffhsu3 commented Mar 2, 2024

Fixes a small issue when including the genome and read_length pulling from the pre-computed effective genome sizes. The returned genome size is an int rather than a string.

QC

  • I confirm that:

For all wrappers added by this PR,

  • there is a test case which covers any introduced changes,
  • input: and output: file paths in the resulting rule can be changed arbitrarily,
  • either the wrapper can only use a single core, or the example rule contains a threads: x statement with x being a reasonable default,
  • rule names in the test case are in snake_case and somehow tell what the rule is about or match the tools purpose or name (e.g., map_reads for a step that maps reads),
  • all environment.yaml specifications follow the respective best practices,
  • the environment.yaml pinning has been updated by running snakedeploy pin-conda-envs environment.yaml on a linux machine,
  • wherever possible, command line arguments are inferred and set automatically (e.g. based on file extensions in input: or output:),
  • all fields of the example rules in the Snakefiles and their entries are explained via comments (input:/output:/params: etc.),
  • stderr and/or stdout are logged correctly (log:), depending on the wrapped tool,
  • temporary files are either written to a unique hidden folder in the working directory, or (better) stored where the Python function tempfile.gettempdir() points to (see here; this also means that using any Python tempfile default behavior works),
  • the meta.yaml contains a link to the documentation of the respective tool or command,
  • Snakefiles pass the linting (snakemake --lint),
  • Snakefiles are formatted with snakefmt,
  • Python wrapper scripts are formatted with black.
  • Conda environments use a minimal amount of channels, in recommended ordering. E.g. for bioconda, use (conda-forge, bioconda, nodefaults, as conda-forge should have highest priority and defaults channels are usually not needed because most packages are in conda-forge nowadays).

@fgvieira
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fgvieira commented Mar 4, 2024

Can you add the new test to snakemake-wrappers/test.py?

@fgvieira fgvieira merged commit 206425b into snakemake:master Apr 20, 2024
6 checks passed
johanneskoester pushed a commit that referenced this pull request Apr 23, 2024
🤖 I have created a release \*beep\* \*boop\*
---
##
[3.9.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v3.8.0...v3.9.0)
(2024-04-22)


### Features

* Add wrapper for defining columns in TTree in ROOT
([#2898](https://www.github.com/snakemake/snakemake-wrappers/issues/2898))
([48730cd](https://www.github.com/snakemake/snakemake-wrappers/commit/48730cddcfb8035a927ee65912c0bda0f88f5ae5))
* Emu support
([#2792](https://www.github.com/snakemake/snakemake-wrappers/issues/2792))
([149ef14](https://www.github.com/snakemake/snakemake-wrappers/commit/149ef14dca9d836d297c95cd4e010c360375f51d))


### Bug Fixes

* deeptools bamcoverage fix
([#2719](https://www.github.com/snakemake/snakemake-wrappers/issues/2719))
([206425b](https://www.github.com/snakemake/snakemake-wrappers/commit/206425b0de89ce97fadd7f4a5af89f4c401470cb))
* empty emu combined output
([#2899](https://www.github.com/snakemake/snakemake-wrappers/issues/2899))
([7b10806](https://www.github.com/snakemake/snakemake-wrappers/commit/7b10806933d735251039fc3e89193e82bb86d936))


### Performance Improvements

* autobump bio/bcftools/call
([#2828](https://www.github.com/snakemake/snakemake-wrappers/issues/2828))
([cd25cc8](https://www.github.com/snakemake/snakemake-wrappers/commit/cd25cc85f238ebfcdcc01b7c550744e2ecee1e6c))
* autobump bio/bcftools/concat
([#2832](https://www.github.com/snakemake/snakemake-wrappers/issues/2832))
([785cd77](https://www.github.com/snakemake/snakemake-wrappers/commit/785cd779e9fc4824b232919f33a76e231000713c))
* autobump bio/bcftools/filter
([#2821](https://www.github.com/snakemake/snakemake-wrappers/issues/2821))
([c4c2315](https://www.github.com/snakemake/snakemake-wrappers/commit/c4c2315fd955fd101d6aee88807d4f5d23409629))
* autobump bio/bcftools/index
([#2829](https://www.github.com/snakemake/snakemake-wrappers/issues/2829))
([3ea7efb](https://www.github.com/snakemake/snakemake-wrappers/commit/3ea7efbd36bf216a0a9f8af5ed325fe5587ceca3))
* autobump bio/bcftools/merge
([#2827](https://www.github.com/snakemake/snakemake-wrappers/issues/2827))
([b1aee95](https://www.github.com/snakemake/snakemake-wrappers/commit/b1aee9585c4952b3f24ced6e216c1b9ec5765b82))
* autobump bio/bcftools/mpileup
([#2817](https://www.github.com/snakemake/snakemake-wrappers/issues/2817))
([9b9c0ea](https://www.github.com/snakemake/snakemake-wrappers/commit/9b9c0ea91bc0ad00fa1d65b1737d3ed8f7ef44fd))
* autobump bio/bcftools/norm
([#2819](https://www.github.com/snakemake/snakemake-wrappers/issues/2819))
([7126185](https://www.github.com/snakemake/snakemake-wrappers/commit/712618518f313737db725edf53bd19847478ad1a))
* autobump bio/bcftools/reheader
([#2822](https://www.github.com/snakemake/snakemake-wrappers/issues/2822))
([a77fa02](https://www.github.com/snakemake/snakemake-wrappers/commit/a77fa020ea307926ccde2659d2146c6a9c413d8e))
* autobump bio/bcftools/sort
([#2825](https://www.github.com/snakemake/snakemake-wrappers/issues/2825))
([7c9bb6d](https://www.github.com/snakemake/snakemake-wrappers/commit/7c9bb6d76a326ab8bfb91c38da4520cb4dfa79b0))
* autobump bio/bcftools/stats
([#2813](https://www.github.com/snakemake/snakemake-wrappers/issues/2813))
([78e1ed6](https://www.github.com/snakemake/snakemake-wrappers/commit/78e1ed6cb3e9a5682eb05943c01afdc24769012d))
* autobump bio/bcftools/view
([#2837](https://www.github.com/snakemake/snakemake-wrappers/issues/2837))
([ba4cb3b](https://www.github.com/snakemake/snakemake-wrappers/commit/ba4cb3b8f437916f6c49714c803e6ad9bb07604a))
* autobump bio/bellerophon
([#2834](https://www.github.com/snakemake/snakemake-wrappers/issues/2834))
([f9c272e](https://www.github.com/snakemake/snakemake-wrappers/commit/f9c272eeb9c0760ef02985ec903a8422733fc8aa))
* autobump bio/benchmark/chm-eval-sample
([#2830](https://www.github.com/snakemake/snakemake-wrappers/issues/2830))
([9911338](https://www.github.com/snakemake/snakemake-wrappers/commit/9911338baf4d0bcaf0db039195293675c4e0aaac))
* autobump bio/bgzip
([#2839](https://www.github.com/snakemake/snakemake-wrappers/issues/2839))
([8b1d2d7](https://www.github.com/snakemake/snakemake-wrappers/commit/8b1d2d73c0b509ca71666974245c6b019028d168))
* autobump bio/bismark/bam2nuc
([#2815](https://www.github.com/snakemake/snakemake-wrappers/issues/2815))
([1462242](https://www.github.com/snakemake/snakemake-wrappers/commit/146224245966bffff9211b808847102e5e481611))
* autobump bio/bismark/bismark
([#2812](https://www.github.com/snakemake/snakemake-wrappers/issues/2812))
([62ee915](https://www.github.com/snakemake/snakemake-wrappers/commit/62ee9153a45f0ff18e3a6d5464a5ec3309202b0d))
* autobump bio/bismark/bismark_genome_preparation
([#2820](https://www.github.com/snakemake/snakemake-wrappers/issues/2820))
([108387c](https://www.github.com/snakemake/snakemake-wrappers/commit/108387c294ad2019df29ff91efa1be80619c25b8))
* autobump bio/bismark/bismark_methylation_extractor
([#2814](https://www.github.com/snakemake/snakemake-wrappers/issues/2814))
([47a2c50](https://www.github.com/snakemake/snakemake-wrappers/commit/47a2c507a7516082ef3d0eab6332d62255cf8980))
* autobump bio/bismark/bismark2bedGraph
([#2831](https://www.github.com/snakemake/snakemake-wrappers/issues/2831))
([556aadd](https://www.github.com/snakemake/snakemake-wrappers/commit/556aaddc88dc4a0ab8cb5f6daf213e238d86d617))
* autobump bio/bismark/bismark2report
([#2808](https://www.github.com/snakemake/snakemake-wrappers/issues/2808))
([b788b96](https://www.github.com/snakemake/snakemake-wrappers/commit/b788b963c4964ad862576362639107d3e269b54a))
* autobump bio/bismark/bismark2summary
([#2809](https://www.github.com/snakemake/snakemake-wrappers/issues/2809))
([ff32047](https://www.github.com/snakemake/snakemake-wrappers/commit/ff320479233c211c11ae2c99a5f7ba583fc538d6))
* autobump bio/bismark/deduplicate_bismark
([#2841](https://www.github.com/snakemake/snakemake-wrappers/issues/2841))
([d897740](https://www.github.com/snakemake/snakemake-wrappers/commit/d897740f94c32755233351e6d8880499baa450e9))
* autobump bio/bowtie2/align
([#2810](https://www.github.com/snakemake/snakemake-wrappers/issues/2810))
([f9b273e](https://www.github.com/snakemake/snakemake-wrappers/commit/f9b273ec3d87d317a4c4ad15e6f9c253660c16af))
* autobump bio/bwa-mem2/mem
([#2824](https://www.github.com/snakemake/snakemake-wrappers/issues/2824))
([a4451ea](https://www.github.com/snakemake/snakemake-wrappers/commit/a4451eae221446e7be759de3409e43ff1857acb3))
* autobump bio/bwa-meme/mem
([#2836](https://www.github.com/snakemake/snakemake-wrappers/issues/2836))
([7f2a24b](https://www.github.com/snakemake/snakemake-wrappers/commit/7f2a24babbaf0dc6b894b3b412bac4587b8e9127))
* autobump bio/bwa-memx/index
([#2816](https://www.github.com/snakemake/snakemake-wrappers/issues/2816))
([d218b2b](https://www.github.com/snakemake/snakemake-wrappers/commit/d218b2b4b8569869c4ad0f416e98c28f28f38b9c))
* autobump bio/bwa-memx/mem
([#2826](https://www.github.com/snakemake/snakemake-wrappers/issues/2826))
([e7baf43](https://www.github.com/snakemake/snakemake-wrappers/commit/e7baf43d02a4e7c8606c2730d584a02508e07244))
* autobump bio/bwa/aln
([#2833](https://www.github.com/snakemake/snakemake-wrappers/issues/2833))
([b41d0b4](https://www.github.com/snakemake/snakemake-wrappers/commit/b41d0b411e8a3eb5426afde949409d245549d80f))
* autobump bio/bwa/index
([#2838](https://www.github.com/snakemake/snakemake-wrappers/issues/2838))
([946d5c3](https://www.github.com/snakemake/snakemake-wrappers/commit/946d5c3ebfe32d9c3cf15a6891c2a8f075a2e108))
* autobump bio/bwa/mem
([#2818](https://www.github.com/snakemake/snakemake-wrappers/issues/2818))
([2d49db7](https://www.github.com/snakemake/snakemake-wrappers/commit/2d49db7de49030835c6a98c78a10e39557606515))
* autobump bio/bwa/mem-samblaster
([#2840](https://www.github.com/snakemake/snakemake-wrappers/issues/2840))
([0fc7d78](https://www.github.com/snakemake/snakemake-wrappers/commit/0fc7d787ae8467112d8dbaf59ba1e1acf3fe0a1f))
* autobump bio/bwa/sampe
([#2811](https://www.github.com/snakemake/snakemake-wrappers/issues/2811))
([a6367ba](https://www.github.com/snakemake/snakemake-wrappers/commit/a6367ba49220e1cd2a6b6e260613104d7a7427b2))
* autobump bio/bwa/samse
([#2823](https://www.github.com/snakemake/snakemake-wrappers/issues/2823))
([6d2b199](https://www.github.com/snakemake/snakemake-wrappers/commit/6d2b19929db4b786afb18111ccb370932a09b226))
* autobump bio/bwa/samxe
([#2835](https://www.github.com/snakemake/snakemake-wrappers/issues/2835))
([a375c11](https://www.github.com/snakemake/snakemake-wrappers/commit/a375c11180ab2c24c246cd88569e0ecaa067830b))
* autobump bio/cnvkit/antitarget
([#2848](https://www.github.com/snakemake/snakemake-wrappers/issues/2848))
([91354dc](https://www.github.com/snakemake/snakemake-wrappers/commit/91354dcf037dae7dba3ca5ebb4db270e4c38525e))
* autobump bio/cnvkit/batch
([#2849](https://www.github.com/snakemake/snakemake-wrappers/issues/2849))
([9fae85d](https://www.github.com/snakemake/snakemake-wrappers/commit/9fae85d27cad290e08c4bb186aed6bda0881ef71))
* autobump bio/cnvkit/call
([#2844](https://www.github.com/snakemake/snakemake-wrappers/issues/2844))
([5437973](https://www.github.com/snakemake/snakemake-wrappers/commit/54379737d0474daaf982ed98eddad39aaae5446e))
* autobump bio/cnvkit/diagram
([#2846](https://www.github.com/snakemake/snakemake-wrappers/issues/2846))
([bcfcbed](https://www.github.com/snakemake/snakemake-wrappers/commit/bcfcbed4cfb7134ad676bd0c704d17a75b6d201d))
* autobump bio/cnvkit/export
([#2843](https://www.github.com/snakemake/snakemake-wrappers/issues/2843))
([c499d71](https://www.github.com/snakemake/snakemake-wrappers/commit/c499d719efb0947bd59134c1bc3f5eb8f76b8fed))
* autobump bio/cnvkit/target
([#2847](https://www.github.com/snakemake/snakemake-wrappers/issues/2847))
([a41c0a0](https://www.github.com/snakemake/snakemake-wrappers/commit/a41c0a094c367343980265c6155a65fd833dbcf7))
* autobump bio/cutadapt/pe
([#2845](https://www.github.com/snakemake/snakemake-wrappers/issues/2845))
([77a7990](https://www.github.com/snakemake/snakemake-wrappers/commit/77a79909f8e8e3dbc61e62fe9d6fab6998464219))
* autobump bio/cutadapt/se
([#2842](https://www.github.com/snakemake/snakemake-wrappers/issues/2842))
([d258f5b](https://www.github.com/snakemake/snakemake-wrappers/commit/d258f5bdcb1ed8b8b3ae0550e864238394384225))
* autobump bio/deeptools/bamcoverage
([#2851](https://www.github.com/snakemake/snakemake-wrappers/issues/2851))
([35d5649](https://www.github.com/snakemake/snakemake-wrappers/commit/35d5649d2a9bc18bcc321a8338a15c9406d31630))
* autobump bio/delly
([#2850](https://www.github.com/snakemake/snakemake-wrappers/issues/2850))
([3fa1540](https://www.github.com/snakemake/snakemake-wrappers/commit/3fa154029b46cb4d8ad871a745edcb3e4c420881))
* autobump bio/emu/abundance
([#2853](https://www.github.com/snakemake/snakemake-wrappers/issues/2853))
([fc3d8b6](https://www.github.com/snakemake/snakemake-wrappers/commit/fc3d8b62712c683938d1c5a7be2c804f78a04958))
* autobump bio/emu/collapse-taxonomy
([#2855](https://www.github.com/snakemake/snakemake-wrappers/issues/2855))
([2ec61a4](https://www.github.com/snakemake/snakemake-wrappers/commit/2ec61a4f5d4a91d8e27d1125d7c9afa60caf8396))
* autobump bio/emu/combine-outputs
([#2854](https://www.github.com/snakemake/snakemake-wrappers/issues/2854))
([ce414e9](https://www.github.com/snakemake/snakemake-wrappers/commit/ce414e9ea040fda1b5ceac1afa6f814538b1ff7f))
* autobump bio/encode_fastq_downloader
([#2852](https://www.github.com/snakemake/snakemake-wrappers/issues/2852))
([b71c6d6](https://www.github.com/snakemake/snakemake-wrappers/commit/b71c6d6e380d8a0839a55c1d6c0ac02221bad4ba))
* autobump bio/freebayes
([#2856](https://www.github.com/snakemake/snakemake-wrappers/issues/2856))
([6f33607](https://www.github.com/snakemake/snakemake-wrappers/commit/6f33607e04c7e80e2bf4dd693cb72900058f0c6a))
* autobump bio/gatk3/printreads
([#2857](https://www.github.com/snakemake/snakemake-wrappers/issues/2857))
([e42c565](https://www.github.com/snakemake/snakemake-wrappers/commit/e42c565cfc0fe296ef0be29f0a0e192d36707c3a))
* autobump bio/hisat2/align
([#2858](https://www.github.com/snakemake/snakemake-wrappers/issues/2858))
([b354fc1](https://www.github.com/snakemake/snakemake-wrappers/commit/b354fc1da877c92dd757e804fe07bb1996514ca4))
* autobump bio/hisat2/index
([#2860](https://www.github.com/snakemake/snakemake-wrappers/issues/2860))
([5d6bdd1](https://www.github.com/snakemake/snakemake-wrappers/commit/5d6bdd137d0d0f4a3ba2ef27d3c2bd76a58e5f51))
* autobump bio/homer/makeTagDirectory
([#2859](https://www.github.com/snakemake/snakemake-wrappers/issues/2859))
([b3b9dfd](https://www.github.com/snakemake/snakemake-wrappers/commit/b3b9dfdc8513a9523205c3d84bf71178b52d88d9))
* autobump bio/lofreq/call
([#2861](https://www.github.com/snakemake/snakemake-wrappers/issues/2861))
([3f66fd1](https://www.github.com/snakemake/snakemake-wrappers/commit/3f66fd18ecb0099ed0f535f677c282ed4e10285a))
* autobump bio/lofreq/indelqual
([#2862](https://www.github.com/snakemake/snakemake-wrappers/issues/2862))
([736bc9c](https://www.github.com/snakemake/snakemake-wrappers/commit/736bc9cd3af8465df355cbe80806788ea6cf641c))
* autobump bio/minimap2/aligner
([#2863](https://www.github.com/snakemake/snakemake-wrappers/issues/2863))
([0fdbb99](https://www.github.com/snakemake/snakemake-wrappers/commit/0fdbb99f2588780f34a5c789cfcac8483830584d))
* autobump bio/paladin/align
([#2865](https://www.github.com/snakemake/snakemake-wrappers/issues/2865))
([50b5c90](https://www.github.com/snakemake/snakemake-wrappers/commit/50b5c9024636f55c0a087853b12cadb6d2ea37d7))
* autobump bio/paladin/index
([#2867](https://www.github.com/snakemake/snakemake-wrappers/issues/2867))
([9d31d8d](https://www.github.com/snakemake/snakemake-wrappers/commit/9d31d8d3ca7c5643d0b5dd6e407f092e75fdc47c))
* autobump bio/paladin/prepare
([#2866](https://www.github.com/snakemake/snakemake-wrappers/issues/2866))
([e327ba7](https://www.github.com/snakemake/snakemake-wrappers/commit/e327ba7c3551dca0a2592d840974876d72fb6766))
* autobump bio/picard/markduplicates
([#2864](https://www.github.com/snakemake/snakemake-wrappers/issues/2864))
([f5ddedc](https://www.github.com/snakemake/snakemake-wrappers/commit/f5ddedccc9a04ce610666ed4e099f07791996509))
* autobump bio/pretext/map
([#2868](https://www.github.com/snakemake/snakemake-wrappers/issues/2868))
([68ba090](https://www.github.com/snakemake/snakemake-wrappers/commit/68ba0909728a349208b55ac9f818197a35d21995))
* autobump bio/rbt/collapse_reads_to_fragments-bam
([#2870](https://www.github.com/snakemake/snakemake-wrappers/issues/2870))
([8b36d24](https://www.github.com/snakemake/snakemake-wrappers/commit/8b36d24b7bb6c5f228329dfca6b422b4ab58141b))
* autobump bio/reference/ensembl-variation
([#2869](https://www.github.com/snakemake/snakemake-wrappers/issues/2869))
([c8df691](https://www.github.com/snakemake/snakemake-wrappers/commit/c8df691a9a210052101e0274cf6612b82292518e))
* autobump bio/samtools/calmd
([#2885](https://www.github.com/snakemake/snakemake-wrappers/issues/2885))
([031bdfa](https://www.github.com/snakemake/snakemake-wrappers/commit/031bdfa9320abdb04d763b3a51e493bb7b2fdc50))
* autobump bio/samtools/depth
([#2875](https://www.github.com/snakemake/snakemake-wrappers/issues/2875))
([16a53d6](https://www.github.com/snakemake/snakemake-wrappers/commit/16a53d6fe09439cc17d262b36218c35aabb2aa85))
* autobump bio/samtools/faidx
([#2874](https://www.github.com/snakemake/snakemake-wrappers/issues/2874))
([6a1b758](https://www.github.com/snakemake/snakemake-wrappers/commit/6a1b758344904c1293215f0a568417ae3f213c34))
* autobump bio/samtools/fastx
([#2884](https://www.github.com/snakemake/snakemake-wrappers/issues/2884))
([60b6495](https://www.github.com/snakemake/snakemake-wrappers/commit/60b6495e145fc098dab87495eeb1bc82513aedce))
* autobump bio/samtools/fixmate
([#2872](https://www.github.com/snakemake/snakemake-wrappers/issues/2872))
([6a14082](https://www.github.com/snakemake/snakemake-wrappers/commit/6a14082b7335343f6b920eb148e380f6097ec401))
* autobump bio/samtools/flagstat
([#2880](https://www.github.com/snakemake/snakemake-wrappers/issues/2880))
([b5b67be](https://www.github.com/snakemake/snakemake-wrappers/commit/b5b67be7ca6cac5433395e6a08d7c40cfd4d5501))
* autobump bio/samtools/idxstats
([#2876](https://www.github.com/snakemake/snakemake-wrappers/issues/2876))
([1f5f13e](https://www.github.com/snakemake/snakemake-wrappers/commit/1f5f13e2cc31b3a8f548df38c2077ef5971cd19c))
* autobump bio/samtools/index
([#2890](https://www.github.com/snakemake/snakemake-wrappers/issues/2890))
([f3f5be3](https://www.github.com/snakemake/snakemake-wrappers/commit/f3f5be30759d3a5e3a1fa4a464f423efb5b5a1c0))
* autobump bio/samtools/merge
([#2883](https://www.github.com/snakemake/snakemake-wrappers/issues/2883))
([162ab43](https://www.github.com/snakemake/snakemake-wrappers/commit/162ab43c5b4eda63ea5d85c071e698156f3f22c4))
* autobump bio/samtools/mpileup
([#2877](https://www.github.com/snakemake/snakemake-wrappers/issues/2877))
([376b565](https://www.github.com/snakemake/snakemake-wrappers/commit/376b5651e9829480e96c30d228cff2cfb6d71918))
* autobump bio/samtools/sort
([#2886](https://www.github.com/snakemake/snakemake-wrappers/issues/2886))
([da3cc4c](https://www.github.com/snakemake/snakemake-wrappers/commit/da3cc4c8f259f7e2a59e0118840415f35fde4b20))
* autobump bio/samtools/stats
([#2888](https://www.github.com/snakemake/snakemake-wrappers/issues/2888))
([5a11e6a](https://www.github.com/snakemake/snakemake-wrappers/commit/5a11e6a752a8fcdf03d4331ac773b399b98c265d))
* autobump bio/samtools/view
([#2878](https://www.github.com/snakemake/snakemake-wrappers/issues/2878))
([d54caec](https://www.github.com/snakemake/snakemake-wrappers/commit/d54caecdb626b42c0e8c7e8eba7308a80fddf1a9))
* autobump bio/snpeff/annotate
([#2871](https://www.github.com/snakemake/snakemake-wrappers/issues/2871))
([3732019](https://www.github.com/snakemake/snakemake-wrappers/commit/37320198fe14ccca7db2f90eee7b3f67051e0d52))
* autobump bio/snpeff/download
([#2889](https://www.github.com/snakemake/snakemake-wrappers/issues/2889))
([6700901](https://www.github.com/snakemake/snakemake-wrappers/commit/6700901b9ce60732fbbf87b843b4145bf73fac36))
* autobump bio/snpsift/annotate
([#2879](https://www.github.com/snakemake/snakemake-wrappers/issues/2879))
([8b5882d](https://www.github.com/snakemake/snakemake-wrappers/commit/8b5882d8e6ee00f54516de38ee62fbf3b65e22af))
* autobump bio/snpsift/dbnsfp
([#2881](https://www.github.com/snakemake/snakemake-wrappers/issues/2881))
([af992da](https://www.github.com/snakemake/snakemake-wrappers/commit/af992daef072949309d833ea3edf995aa42a98fb))
* autobump bio/snpsift/genesets
([#2882](https://www.github.com/snakemake/snakemake-wrappers/issues/2882))
([c58973e](https://www.github.com/snakemake/snakemake-wrappers/commit/c58973e90dc46fb3d92acb249d776c1b053164ed))
* autobump bio/snpsift/gwascat
([#2873](https://www.github.com/snakemake/snakemake-wrappers/issues/2873))
([bd82454](https://www.github.com/snakemake/snakemake-wrappers/commit/bd82454a3ee003736478461a61f6aca48609909e))
* autobump bio/spades/metaspades
([#2887](https://www.github.com/snakemake/snakemake-wrappers/issues/2887))
([a678d26](https://www.github.com/snakemake/snakemake-wrappers/commit/a678d26f4e40c1df1c8524bb63085b088b5b9274))
* autobump bio/tabix/index
([#2892](https://www.github.com/snakemake/snakemake-wrappers/issues/2892))
([91122a4](https://www.github.com/snakemake/snakemake-wrappers/commit/91122a4fba60bd6658d30208207b392d190cf031))
* autobump bio/tabix/query
([#2891](https://www.github.com/snakemake/snakemake-wrappers/issues/2891))
([67caa45](https://www.github.com/snakemake/snakemake-wrappers/commit/67caa4567fba4e2221a2209792929d05ad4f0a6d))
* autobump bio/umis/bamtag
([#2894](https://www.github.com/snakemake/snakemake-wrappers/issues/2894))
([50d9fba](https://www.github.com/snakemake/snakemake-wrappers/commit/50d9fba291bba5e26b655b1e9c699ba793cce1b5))
* autobump bio/unicycler
([#2893](https://www.github.com/snakemake/snakemake-wrappers/issues/2893))
([591095b](https://www.github.com/snakemake/snakemake-wrappers/commit/591095ba04afbfb3051a86d6d144d5a343da5920))
* autobump bio/vep/annotate
([#2896](https://www.github.com/snakemake/snakemake-wrappers/issues/2896))
([85acb44](https://www.github.com/snakemake/snakemake-wrappers/commit/85acb44c4b787e554fab3aedd864f6db49a333e0))
* autobump bio/vep/cache
([#2897](https://www.github.com/snakemake/snakemake-wrappers/issues/2897))
([529d832](https://www.github.com/snakemake/snakemake-wrappers/commit/529d832e8613bb5686fea9b3a5c25f83f4eb204d))
* autobump bio/vep/plugins
([#2895](https://www.github.com/snakemake/snakemake-wrappers/issues/2895))
([e2045c6](https://www.github.com/snakemake/snakemake-wrappers/commit/e2045c6b91eaf5f50b31dcbac37f0e19668e2510))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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2 participants