perf: autobump bio/samtools/depth #2477
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johanneskoester
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🤖 I have created a release \*beep\* \*boop\* --- ## [3.3.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v3.2.0...v3.3.0) (2023-12-15) ### Features * add wrapper for fetching files from EGA ([#2488](https://www.github.com/snakemake/snakemake-wrappers/issues/2488)) ([3d29dcf](https://www.github.com/snakemake/snakemake-wrappers/commit/3d29dcf31a51e466796e48659402680cfd4d9290)) ### Bug Fixes * add error handling to entrez wrapper ([#2489](https://www.github.com/snakemake/snakemake-wrappers/issues/2489)) ([7d654d5](https://www.github.com/snakemake/snakemake-wrappers/commit/7d654d5a3553455400454c4f38c8a64762e54594)) ### Performance Improvements * autobump bio/bcftools/call ([#2431](https://www.github.com/snakemake/snakemake-wrappers/issues/2431)) ([3fb48df](https://www.github.com/snakemake/snakemake-wrappers/commit/3fb48df8a946a48194e0287d97906a09586275da)) * autobump bio/bcftools/concat ([#2413](https://www.github.com/snakemake/snakemake-wrappers/issues/2413)) ([5bf2d39](https://www.github.com/snakemake/snakemake-wrappers/commit/5bf2d39710d1a10139b7d9e5cd54b5e474b0e56c)) * autobump bio/bcftools/filter ([#2428](https://www.github.com/snakemake/snakemake-wrappers/issues/2428)) ([6819cb8](https://www.github.com/snakemake/snakemake-wrappers/commit/6819cb8b71e5d4be04018deb1418664454aee76f)) * autobump bio/bcftools/index ([#2418](https://www.github.com/snakemake/snakemake-wrappers/issues/2418)) ([53259a7](https://www.github.com/snakemake/snakemake-wrappers/commit/53259a700164f91540155c424b7d8b4778300da5)) * autobump bio/bcftools/merge ([#2432](https://www.github.com/snakemake/snakemake-wrappers/issues/2432)) ([778ea14](https://www.github.com/snakemake/snakemake-wrappers/commit/778ea14f174b4ecc809caacde9012e1cd10d22f4)) * autobump bio/bcftools/mpileup ([#2437](https://www.github.com/snakemake/snakemake-wrappers/issues/2437)) ([304d0b8](https://www.github.com/snakemake/snakemake-wrappers/commit/304d0b8605665eb31805c9d1e85c4b1ef77d0939)) * autobump bio/bcftools/norm ([#2442](https://www.github.com/snakemake/snakemake-wrappers/issues/2442)) ([17a025a](https://www.github.com/snakemake/snakemake-wrappers/commit/17a025ad934d6abe56fff43c310f9098b7f4bf00)) * autobump bio/bcftools/reheader ([#2427](https://www.github.com/snakemake/snakemake-wrappers/issues/2427)) ([d737204](https://www.github.com/snakemake/snakemake-wrappers/commit/d73720445433d3ff12f7c8e8ac2be736979d0736)) * autobump bio/bcftools/sort ([#2421](https://www.github.com/snakemake/snakemake-wrappers/issues/2421)) ([a6e4426](https://www.github.com/snakemake/snakemake-wrappers/commit/a6e44263b0cbf189c5f44ff9044c0775587801e3)) * autobump bio/bcftools/stats ([#2441](https://www.github.com/snakemake/snakemake-wrappers/issues/2441)) ([8c6f632](https://www.github.com/snakemake/snakemake-wrappers/commit/8c6f63282630326e051da8e15e8b0eca4761eb05)) * autobump bio/bcftools/view ([#2423](https://www.github.com/snakemake/snakemake-wrappers/issues/2423)) ([ba73c90](https://www.github.com/snakemake/snakemake-wrappers/commit/ba73c9018a294803101bd92c66bac63b2b42da10)) * autobump bio/bellerophon ([#2439](https://www.github.com/snakemake/snakemake-wrappers/issues/2439)) ([439488e](https://www.github.com/snakemake/snakemake-wrappers/commit/439488eac380b2d528240fcaee5457ff362780ba)) * autobump bio/benchmark/chm-eval-sample ([#2440](https://www.github.com/snakemake/snakemake-wrappers/issues/2440)) ([fd6981a](https://www.github.com/snakemake/snakemake-wrappers/commit/fd6981ae6f9734f0dd3ac62fd15370f844f81956)) * autobump bio/bgzip ([#2429](https://www.github.com/snakemake/snakemake-wrappers/issues/2429)) ([8f3b527](https://www.github.com/snakemake/snakemake-wrappers/commit/8f3b5278fcb985a9b68862fd321cbbf60af1af43)) * autobump bio/bismark/bam2nuc ([#2416](https://www.github.com/snakemake/snakemake-wrappers/issues/2416)) ([32f9515](https://www.github.com/snakemake/snakemake-wrappers/commit/32f9515e315b1a4e694e92eb57151ac8387649af)) * autobump bio/bismark/bismark ([#2443](https://www.github.com/snakemake/snakemake-wrappers/issues/2443)) ([2c156a9](https://www.github.com/snakemake/snakemake-wrappers/commit/2c156a9011d9694c08be5ab5368dcbf1748a7442)) * autobump bio/bismark/bismark_genome_preparation ([#2434](https://www.github.com/snakemake/snakemake-wrappers/issues/2434)) ([4a1b858](https://www.github.com/snakemake/snakemake-wrappers/commit/4a1b85846f4ee85bf0f6efb0c8f7746f0eed39de)) * autobump bio/bismark/bismark_methylation_extractor ([#2415](https://www.github.com/snakemake/snakemake-wrappers/issues/2415)) ([ae1848d](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1848db14173cb06d8047688f3b3fdc8b2c0669)) * autobump bio/bismark/bismark2bedGraph ([#2435](https://www.github.com/snakemake/snakemake-wrappers/issues/2435)) ([ddbc964](https://www.github.com/snakemake/snakemake-wrappers/commit/ddbc964b016746be56e2682fa3be20ad895560b7)) * autobump bio/bismark/bismark2report ([#2422](https://www.github.com/snakemake/snakemake-wrappers/issues/2422)) ([b3b1f78](https://www.github.com/snakemake/snakemake-wrappers/commit/b3b1f78c0da8fc71a5b5748665b615fab2bf1c47)) * autobump bio/bismark/bismark2summary ([#2420](https://www.github.com/snakemake/snakemake-wrappers/issues/2420)) ([31a87bf](https://www.github.com/snakemake/snakemake-wrappers/commit/31a87bf24443051bde41283473b5eb3e803ea64f)) * autobump bio/bismark/deduplicate_bismark ([#2426](https://www.github.com/snakemake/snakemake-wrappers/issues/2426)) ([490e276](https://www.github.com/snakemake/snakemake-wrappers/commit/490e27668ee4ebf2e1d1c6e10a481d5f853a6c41)) * autobump bio/bowtie2/align ([#2414](https://www.github.com/snakemake/snakemake-wrappers/issues/2414)) ([8fe3716](https://www.github.com/snakemake/snakemake-wrappers/commit/8fe37169b72216ed862add0f992d72e5a9d2f53e)) * autobump bio/bwa-mem2/mem ([#2430](https://www.github.com/snakemake/snakemake-wrappers/issues/2430)) ([8ae7338](https://www.github.com/snakemake/snakemake-wrappers/commit/8ae7338165b7b7fad677486208c23b7caeefe73f)) * autobump bio/bwa-meme/mem ([#2433](https://www.github.com/snakemake/snakemake-wrappers/issues/2433)) ([2389bba](https://www.github.com/snakemake/snakemake-wrappers/commit/2389bba482f497e2b61b6be14ea2ab6d81772918)) * autobump bio/bwa-memx/mem ([#2424](https://www.github.com/snakemake/snakemake-wrappers/issues/2424)) ([ad72b7b](https://www.github.com/snakemake/snakemake-wrappers/commit/ad72b7b8048c53498df0951cf1deaf8e34c7f7cd)) * autobump bio/bwa/mem ([#2417](https://www.github.com/snakemake/snakemake-wrappers/issues/2417)) ([bb679e9](https://www.github.com/snakemake/snakemake-wrappers/commit/bb679e9a13a275e314fba628bfdd1703a87a4205)) * autobump bio/bwa/sampe ([#2438](https://www.github.com/snakemake/snakemake-wrappers/issues/2438)) ([ddefb15](https://www.github.com/snakemake/snakemake-wrappers/commit/ddefb155e42e6a7867abd88b8f0b1d0773c3a943)) * autobump bio/bwa/samse ([#2436](https://www.github.com/snakemake/snakemake-wrappers/issues/2436)) ([a845fa4](https://www.github.com/snakemake/snakemake-wrappers/commit/a845fa4b50966965a04b4c27895c740e4916ef45)) * autobump bio/bwa/samxe ([#2425](https://www.github.com/snakemake/snakemake-wrappers/issues/2425)) ([973ac6f](https://www.github.com/snakemake/snakemake-wrappers/commit/973ac6f531ac2a8735a3a344f548f5d3140054e1)) * autobump bio/cnvkit/export ([#2444](https://www.github.com/snakemake/snakemake-wrappers/issues/2444)) ([36a3d1e](https://www.github.com/snakemake/snakemake-wrappers/commit/36a3d1ef1782963483087a1cbdf7af3d49e360de)) * autobump bio/fgbio/annotatebamwithumis ([#2446](https://www.github.com/snakemake/snakemake-wrappers/issues/2446)) ([e896272](https://www.github.com/snakemake/snakemake-wrappers/commit/e89627231ac00d4a4f0a545bfc8dd3418611310f)) * autobump bio/fgbio/collectduplexseqmetrics ([#2448](https://www.github.com/snakemake/snakemake-wrappers/issues/2448)) ([2abdd7f](https://www.github.com/snakemake/snakemake-wrappers/commit/2abdd7f64d4e1ba0aa2429fe88e7e5d463a6c340)) * autobump bio/fgbio/filterconsensusreads ([#2447](https://www.github.com/snakemake/snakemake-wrappers/issues/2447)) ([96ad8bc](https://www.github.com/snakemake/snakemake-wrappers/commit/96ad8bc0343989e928ca1d19114735854e088c7d)) * autobump bio/fgbio/groupreadsbyumi ([#2445](https://www.github.com/snakemake/snakemake-wrappers/issues/2445)) ([d8bc1d7](https://www.github.com/snakemake/snakemake-wrappers/commit/d8bc1d73c6e165c0b5bf58ddae7611db55e39ff9)) * autobump bio/fgbio/setmateinformation ([#2449](https://www.github.com/snakemake/snakemake-wrappers/issues/2449)) ([866cedc](https://www.github.com/snakemake/snakemake-wrappers/commit/866cedca8690a14f198fc962db9c38ed89a1a27d)) * autobump bio/gatk/applybqsr ([#2450](https://www.github.com/snakemake/snakemake-wrappers/issues/2450)) ([63c744a](https://www.github.com/snakemake/snakemake-wrappers/commit/63c744a9791ed0b476637a89bff613b80216b2d5)) * autobump bio/hisat2/align ([#2452](https://www.github.com/snakemake/snakemake-wrappers/issues/2452)) ([3549c8e](https://www.github.com/snakemake/snakemake-wrappers/commit/3549c8e89904d762e3abcf9d2a09efb423cfba06)) * autobump bio/hisat2/index ([#2453](https://www.github.com/snakemake/snakemake-wrappers/issues/2453)) ([017190a](https://www.github.com/snakemake/snakemake-wrappers/commit/017190ad66419df64941a8928adc2cc8b2cd64d5)) * autobump bio/homer/makeTagDirectory ([#2451](https://www.github.com/snakemake/snakemake-wrappers/issues/2451)) ([22d8f8d](https://www.github.com/snakemake/snakemake-wrappers/commit/22d8f8dc5f5a803e60894e397dd6baa783266048)) * autobump bio/lofreq/call ([#2454](https://www.github.com/snakemake/snakemake-wrappers/issues/2454)) ([08bac48](https://www.github.com/snakemake/snakemake-wrappers/commit/08bac487ac8fdac031f1e36c2d33433aeaba1c30)) * autobump bio/lofreq/indelqual ([#2455](https://www.github.com/snakemake/snakemake-wrappers/issues/2455)) ([2637859](https://www.github.com/snakemake/snakemake-wrappers/commit/26378599f8b02a8c0d37cfe2557abda2dd12e4e0)) * autobump bio/mosdepth ([#2456](https://www.github.com/snakemake/snakemake-wrappers/issues/2456)) ([3caefb0](https://www.github.com/snakemake/snakemake-wrappers/commit/3caefb0fa0cb3953687c06458b900dccea1fe2da)) * autobump bio/paladin/align ([#2457](https://www.github.com/snakemake/snakemake-wrappers/issues/2457)) ([32fb56f](https://www.github.com/snakemake/snakemake-wrappers/commit/32fb56f4284d079a88c8f087be8f35349ccc9b3d)) * autobump bio/paladin/index ([#2461](https://www.github.com/snakemake/snakemake-wrappers/issues/2461)) ([e3bc12a](https://www.github.com/snakemake/snakemake-wrappers/commit/e3bc12a3d9a6e245efe8fa1af24198f06ded1696)) * autobump bio/paladin/prepare ([#2459](https://www.github.com/snakemake/snakemake-wrappers/issues/2459)) ([bb0f509](https://www.github.com/snakemake/snakemake-wrappers/commit/bb0f509113021d131c211165135f04713c334371)) * autobump bio/picard/markduplicates ([#2460](https://www.github.com/snakemake/snakemake-wrappers/issues/2460)) ([778f1fd](https://www.github.com/snakemake/snakemake-wrappers/commit/778f1fdf5e3479ac97fddb031b431047fd984729)) * autobump bio/pretext/map ([#2458](https://www.github.com/snakemake/snakemake-wrappers/issues/2458)) ([8535686](https://www.github.com/snakemake/snakemake-wrappers/commit/8535686db2eb1920a747dcaddcff4824aa34807f)) * autobump bio/reference/ensembl-variation ([#2462](https://www.github.com/snakemake/snakemake-wrappers/issues/2462)) ([26c321a](https://www.github.com/snakemake/snakemake-wrappers/commit/26c321a7e62e37eba26f3f75cb0833a8f7415cdf)) * autobump bio/samtools/calmd ([#2463](https://www.github.com/snakemake/snakemake-wrappers/issues/2463)) ([d1c7b4a](https://www.github.com/snakemake/snakemake-wrappers/commit/d1c7b4a8a48757443110d43e3982ddb0ec39eb0a)) * autobump bio/samtools/depth ([#2477](https://www.github.com/snakemake/snakemake-wrappers/issues/2477)) ([da2a62b](https://www.github.com/snakemake/snakemake-wrappers/commit/da2a62b805b096ec61c54aeef84ed0b67d1953ed)) * autobump bio/samtools/faidx ([#2470](https://www.github.com/snakemake/snakemake-wrappers/issues/2470)) ([7298ed1](https://www.github.com/snakemake/snakemake-wrappers/commit/7298ed1f515f915f17104354ed2f121c42b3150d)) * autobump bio/samtools/fastx ([#2474](https://www.github.com/snakemake/snakemake-wrappers/issues/2474)) ([ddbfa88](https://www.github.com/snakemake/snakemake-wrappers/commit/ddbfa884296d5f97ef7ab5cec7bf05bb00863ed6)) * autobump bio/samtools/fixmate ([#2481](https://www.github.com/snakemake/snakemake-wrappers/issues/2481)) ([71ecb0d](https://www.github.com/snakemake/snakemake-wrappers/commit/71ecb0dff6d027bee70232df03f71c4ebfc92fd3)) * autobump bio/samtools/flagstat ([#2471](https://www.github.com/snakemake/snakemake-wrappers/issues/2471)) ([93c93e3](https://www.github.com/snakemake/snakemake-wrappers/commit/93c93e31fdbb67dafa009f67577f0224878f3020)) * autobump bio/samtools/idxstats ([#2480](https://www.github.com/snakemake/snakemake-wrappers/issues/2480)) ([304c854](https://www.github.com/snakemake/snakemake-wrappers/commit/304c854a0a96caf417d50395a3635fc1e4db0cb3)) * autobump bio/samtools/index ([#2473](https://www.github.com/snakemake/snakemake-wrappers/issues/2473)) ([eed7721](https://www.github.com/snakemake/snakemake-wrappers/commit/eed772107289a59438d06bd51fdbae43bb08c6db)) * autobump bio/samtools/merge ([#2479](https://www.github.com/snakemake/snakemake-wrappers/issues/2479)) ([d6995ca](https://www.github.com/snakemake/snakemake-wrappers/commit/d6995ca4ba9987d96f5cc601b0a7dea09cc2f86a)) * autobump bio/samtools/mpileup ([#2475](https://www.github.com/snakemake/snakemake-wrappers/issues/2475)) ([c3707b0](https://www.github.com/snakemake/snakemake-wrappers/commit/c3707b04154b72196fc52c3872141c84dff9c9a9)) * autobump bio/samtools/sort ([#2468](https://www.github.com/snakemake/snakemake-wrappers/issues/2468)) ([f04208c](https://www.github.com/snakemake/snakemake-wrappers/commit/f04208c7ca7957755a17e6cc101821d69df80946)) * autobump bio/samtools/stats ([#2466](https://www.github.com/snakemake/snakemake-wrappers/issues/2466)) ([82c5af8](https://www.github.com/snakemake/snakemake-wrappers/commit/82c5af8b774d69ee625d5decb5974f617f4c5a03)) * autobump bio/samtools/view ([#2469](https://www.github.com/snakemake/snakemake-wrappers/issues/2469)) ([5ecc368](https://www.github.com/snakemake/snakemake-wrappers/commit/5ecc368c8f2fe29ecc8efbf8fff20eae0ec67d5f)) * autobump bio/snpeff/annotate ([#2472](https://www.github.com/snakemake/snakemake-wrappers/issues/2472)) ([41cbb4d](https://www.github.com/snakemake/snakemake-wrappers/commit/41cbb4d5ca2d765bfdcc70ba9cf2fa22259ed308)) * autobump bio/snpeff/download ([#2478](https://www.github.com/snakemake/snakemake-wrappers/issues/2478)) ([e8d0586](https://www.github.com/snakemake/snakemake-wrappers/commit/e8d0586f043152e85101fed0a0e2fcbf238aec74)) * autobump bio/snpsift/annotate ([#2464](https://www.github.com/snakemake/snakemake-wrappers/issues/2464)) ([7123087](https://www.github.com/snakemake/snakemake-wrappers/commit/712308755a24985f808679ba4ff116ba6d51ff5e)) * autobump bio/snpsift/dbnsfp ([#2467](https://www.github.com/snakemake/snakemake-wrappers/issues/2467)) ([4071e38](https://www.github.com/snakemake/snakemake-wrappers/commit/4071e38375713220e456d22be8d55fb0a07e01a2)) * autobump bio/snpsift/genesets ([#2476](https://www.github.com/snakemake/snakemake-wrappers/issues/2476)) ([8db87de](https://www.github.com/snakemake/snakemake-wrappers/commit/8db87defb87e7729e672bfda0b579cdab351b544)) * autobump bio/snpsift/gwascat ([#2465](https://www.github.com/snakemake/snakemake-wrappers/issues/2465)) ([74a030f](https://www.github.com/snakemake/snakemake-wrappers/commit/74a030fe1ca68f81136203722ee875a95802fb17)) * autobump bio/tabix/query ([#2483](https://www.github.com/snakemake/snakemake-wrappers/issues/2483)) ([1e15361](https://www.github.com/snakemake/snakemake-wrappers/commit/1e15361f6d9173d40a3de81379dc7c7ad386679c)) * autobump bio/tximport ([#2482](https://www.github.com/snakemake/snakemake-wrappers/issues/2482)) ([e97353f](https://www.github.com/snakemake/snakemake-wrappers/commit/e97353fac526b730b054a4b756fb59a6d0a6512a)) * autobump bio/umis/bamtag ([#2484](https://www.github.com/snakemake/snakemake-wrappers/issues/2484)) ([d0501aa](https://www.github.com/snakemake/snakemake-wrappers/commit/d0501aa052218dbca8b28124bff34c20f7db6d39)) * autobump bio/vembrane/filter ([#2486](https://www.github.com/snakemake/snakemake-wrappers/issues/2486)) ([b0b3cc9](https://www.github.com/snakemake/snakemake-wrappers/commit/b0b3cc9565e9723375a187c2536cabf4a30a87a2)) * autobump bio/vembrane/table ([#2485](https://www.github.com/snakemake/snakemake-wrappers/issues/2485)) ([a34fd66](https://www.github.com/snakemake/snakemake-wrappers/commit/a34fd66f3dcb6ae701ba756bcb8381ec83d7ecfa)) * autobump bio/vep/annotate ([#2487](https://www.github.com/snakemake/snakemake-wrappers/issues/2487)) ([530fe3f](https://www.github.com/snakemake/snakemake-wrappers/commit/530fe3f635634410ee57c2d2ffbe1e5737645a17)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic bump of bio/samtools/depth.