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perf: autobump bio/picard/markduplicates #2276

Merged

mergify merged 2 commits into master from autobump/bio-picard-markduplicates

Nov 3, 2023

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snakedeploy-bot bot commented Nov 3, 2023

Automatic bump of bio/picard/markduplicates.

snakedeploy-bot bot added 2 commits

November 3, 2023 03:35


          perf: update bio/picard/markduplicates/environment.yaml.

c2d9e0b


          feat: add pinning for bio/picard/markduplicates/environment.yaml.

2bdad5e

snakedeploy-bot bot added the bio/picard/markduplicates label

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mergify bot merged commit 93933d4 into master

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mergify bot deleted the autobump/bio-picard-markduplicates branch

November 3, 2023 03:44

johanneskoester pushed a commit that referenced this pull request


          chore: release 2.10.0 (#2289)

a492255

🤖 I have created a release \*beep\* \*boop\*
---
##
[2.10.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.9.1...v2.10.0)
(2023-11-08)


### Features

* update datavzrd 2.29.0
([#2288](https://www.github.com/snakemake/snakemake-wrappers/issues/2288))
([02ca59a](https://www.github.com/snakemake/snakemake-wrappers/commit/02ca59af0b79d099c88bbd4407a3a7695e8a7848))
* update datavzrd 2.30.0
([#2294](https://www.github.com/snakemake/snakemake-wrappers/issues/2294))
([6c1750d](https://www.github.com/snakemake/snakemake-wrappers/commit/6c1750d9f915fc8c28a231ec575af7b9feafb65f))


### Bug Fixes

* bug when renaming samples
([#2293](https://www.github.com/snakemake/snakemake-wrappers/issues/2293))
([8c217f8](https://www.github.com/snakemake/snakemake-wrappers/commit/8c217f8a86128deb7c5579ce35081e515434b6e9))
* fix datavzrd version pinning
([#2290](https://www.github.com/snakemake/snakemake-wrappers/issues/2290))
([2f0cee7](https://www.github.com/snakemake/snakemake-wrappers/commit/2f0cee7fcaa3878e19534c05b2a4ac2c4d413c18))


### Performance Improvements

* autobump bio/bustools/sort
([#2234](https://www.github.com/snakemake/snakemake-wrappers/issues/2234))
([3ce66d6](https://www.github.com/snakemake/snakemake-wrappers/commit/3ce66d627741904cb7903380900948f21d7902b6))
* autobump bio/bustools/text
([#2233](https://www.github.com/snakemake/snakemake-wrappers/issues/2233))
([88185ac](https://www.github.com/snakemake/snakemake-wrappers/commit/88185acf6b74e1bc2280e54aaaab2a1e86ce2bed))
* autobump bio/deseq2/deseqdataset
([#2237](https://www.github.com/snakemake/snakemake-wrappers/issues/2237))
([dfc5575](https://www.github.com/snakemake/snakemake-wrappers/commit/dfc5575b3364513c0530111043e2d961717b0c80))
* autobump bio/deseq2/wald
([#2236](https://www.github.com/snakemake/snakemake-wrappers/issues/2236))
([8657895](https://www.github.com/snakemake/snakemake-wrappers/commit/8657895edeb9f2fc58a0837f5cccd94ef980d18f))
* autobump bio/fastp
([#2239](https://www.github.com/snakemake/snakemake-wrappers/issues/2239))
([8b5947d](https://www.github.com/snakemake/snakemake-wrappers/commit/8b5947d8b6f24652eba036729d48a93957e6f08b))
* autobump bio/fastq_screen
([#2238](https://www.github.com/snakemake/snakemake-wrappers/issues/2238))
([c75f5a2](https://www.github.com/snakemake/snakemake-wrappers/commit/c75f5a2faade1a5e6a89a9e05ab6688ce3a5951e))
* autobump bio/fastqc
([#2240](https://www.github.com/snakemake/snakemake-wrappers/issues/2240))
([5b46013](https://www.github.com/snakemake/snakemake-wrappers/commit/5b46013824dda94c13e4a096e42eb34c4956f613))
* autobump bio/fgbio/annotatebamwithumis
([#2243](https://www.github.com/snakemake/snakemake-wrappers/issues/2243))
([f7b8427](https://www.github.com/snakemake/snakemake-wrappers/commit/f7b842729e22695562df8601d172a02cd382ab00))
* autobump bio/fgbio/callmolecularconsensusreads
([#2244](https://www.github.com/snakemake/snakemake-wrappers/issues/2244))
([0def80b](https://www.github.com/snakemake/snakemake-wrappers/commit/0def80b73c4f973d4c09de37ae3c5462e7e98209))
* autobump bio/fgbio/filterconsensusreads
([#2242](https://www.github.com/snakemake/snakemake-wrappers/issues/2242))
([aed8b65](https://www.github.com/snakemake/snakemake-wrappers/commit/aed8b653dce7ea3f5813531ed8f88407309e4274))
* autobump bio/fgbio/groupreadsbyumi
([#2245](https://www.github.com/snakemake/snakemake-wrappers/issues/2245))
([98ca646](https://www.github.com/snakemake/snakemake-wrappers/commit/98ca6462f82b24cfa9a1089b0f77f43454ccad68))
* autobump bio/filtlong
([#2241](https://www.github.com/snakemake/snakemake-wrappers/issues/2241))
([2a5123f](https://www.github.com/snakemake/snakemake-wrappers/commit/2a5123f41cece081a3e03dd6c5a469552c8f585b))
* autobump bio/paladin/align
([#2270](https://www.github.com/snakemake/snakemake-wrappers/issues/2270))
([e1d5293](https://www.github.com/snakemake/snakemake-wrappers/commit/e1d529342208c505a9aa25c09a288c9078ef9985))
* autobump bio/paladin/prepare
([#2277](https://www.github.com/snakemake/snakemake-wrappers/issues/2277))
([5615116](https://www.github.com/snakemake/snakemake-wrappers/commit/5615116982038ef123b7eaeb63dd041a1df831bd))
* autobump bio/pbmm2/align
([#2269](https://www.github.com/snakemake/snakemake-wrappers/issues/2269))
([6f2f6cf](https://www.github.com/snakemake/snakemake-wrappers/commit/6f2f6cf58aef9988fb2af0d2ee378a3c6c6d0234))
* autobump bio/pbmm2/index
([#2273](https://www.github.com/snakemake/snakemake-wrappers/issues/2273))
([95eea96](https://www.github.com/snakemake/snakemake-wrappers/commit/95eea9646ddba88a5d38d945b75b6ef1d927e395))
* autobump bio/pear
([#2266](https://www.github.com/snakemake/snakemake-wrappers/issues/2266))
([294be33](https://www.github.com/snakemake/snakemake-wrappers/commit/294be3391a8bb1704ebfab3e704df0749c4f286d))
* autobump bio/picard/addorreplacereadgroups
([#2259](https://www.github.com/snakemake/snakemake-wrappers/issues/2259))
([bc422f3](https://www.github.com/snakemake/snakemake-wrappers/commit/bc422f3a7742faa648e421952d249e9452e1bed2))
* autobump bio/picard/bedtointervallist
([#2272](https://www.github.com/snakemake/snakemake-wrappers/issues/2272))
([203b36a](https://www.github.com/snakemake/snakemake-wrappers/commit/203b36a4087ba4960f436d885961b71c6d4581d5))
* autobump bio/picard/collectalignmentsummarymetrics
([#2262](https://www.github.com/snakemake/snakemake-wrappers/issues/2262))
([41e8dde](https://www.github.com/snakemake/snakemake-wrappers/commit/41e8dde0ecb9e4d7048cff9951d0806a31124c66))
* autobump bio/picard/collectgcbiasmetrics
([#2256](https://www.github.com/snakemake/snakemake-wrappers/issues/2256))
([80b3cf6](https://www.github.com/snakemake/snakemake-wrappers/commit/80b3cf6b92cafc0e621a9829ff8ae9005d7f5d71))
* autobump bio/picard/collecthsmetrics
([#2257](https://www.github.com/snakemake/snakemake-wrappers/issues/2257))
([ae663c2](https://www.github.com/snakemake/snakemake-wrappers/commit/ae663c2e72d5956625b8f107e78d3d3cc3ca0412))
* autobump bio/picard/collectinsertsizemetrics
([#2261](https://www.github.com/snakemake/snakemake-wrappers/issues/2261))
([ef362b3](https://www.github.com/snakemake/snakemake-wrappers/commit/ef362b3cbcd7e8138c54e5ae57347d86bd1e1e6d))
* autobump bio/picard/collectmultiplemetrics
([#2248](https://www.github.com/snakemake/snakemake-wrappers/issues/2248))
([f73efb6](https://www.github.com/snakemake/snakemake-wrappers/commit/f73efb6a6f30c51382a2837fb4d82769d2425286))
* autobump bio/picard/collectrnaseqmetrics
([#2250](https://www.github.com/snakemake/snakemake-wrappers/issues/2250))
([c4f541b](https://www.github.com/snakemake/snakemake-wrappers/commit/c4f541b80a3a0cc2b85affc703aa02d6104f8add))
* autobump bio/picard/collecttargetedpcrmetrics
([#2263](https://www.github.com/snakemake/snakemake-wrappers/issues/2263))
([2fb4af9](https://www.github.com/snakemake/snakemake-wrappers/commit/2fb4af954402e0ea66ae8b4494265c54f16fee21))
* autobump bio/picard/markduplicates
([#2276](https://www.github.com/snakemake/snakemake-wrappers/issues/2276))
([93933d4](https://www.github.com/snakemake/snakemake-wrappers/commit/93933d408142d73093cdc87890faf1dc99de0452))
* autobump bio/picard/mergevcfs
([#2271](https://www.github.com/snakemake/snakemake-wrappers/issues/2271))
([302d1ff](https://www.github.com/snakemake/snakemake-wrappers/commit/302d1ff942bdf57bb40fef322c018f1000b75585))
* autobump bio/picard/revertsam
([#2285](https://www.github.com/snakemake/snakemake-wrappers/issues/2285))
([eee4daf](https://www.github.com/snakemake/snakemake-wrappers/commit/eee4daf752233ff0647b300fcb92499712ce0daf))
* autobump bio/picard/samtofastq
([#2280](https://www.github.com/snakemake/snakemake-wrappers/issues/2280))
([803ddec](https://www.github.com/snakemake/snakemake-wrappers/commit/803ddec608bfd3414000f5285f6ebb9df588d3e8))
* autobump bio/picard/sortsam
([#2258](https://www.github.com/snakemake/snakemake-wrappers/issues/2258))
([118b70d](https://www.github.com/snakemake/snakemake-wrappers/commit/118b70d5fa85cf257a2c29c71da4f9a0e4362fc9))
* autobump bio/pindel/call
([#2275](https://www.github.com/snakemake/snakemake-wrappers/issues/2275))
([45c52d3](https://www.github.com/snakemake/snakemake-wrappers/commit/45c52d3b01b4e3f25d2682bfc2fdf67e8c7187df))
* autobump bio/pindel/pindel2vcf
([#2281](https://www.github.com/snakemake/snakemake-wrappers/issues/2281))
([5ffe4bc](https://www.github.com/snakemake/snakemake-wrappers/commit/5ffe4bce3c7c7d07bce713b198f55402b2924bff))
* autobump bio/plass
([#2264](https://www.github.com/snakemake/snakemake-wrappers/issues/2264))
([0d8ca7f](https://www.github.com/snakemake/snakemake-wrappers/commit/0d8ca7f058256c5e6aaba74030daa750639a056d))
* autobump bio/preseq/lc_extrap
([#2254](https://www.github.com/snakemake/snakemake-wrappers/issues/2254))
([538e322](https://www.github.com/snakemake/snakemake-wrappers/commit/538e322bf3d3ad7f7c1a616d66b4b30c37113ead))
* autobump bio/pretext/graph
([#2251](https://www.github.com/snakemake/snakemake-wrappers/issues/2251))
([f3c7296](https://www.github.com/snakemake/snakemake-wrappers/commit/f3c7296371f1dfd61753ea8b78f1d9c32413084f))
* autobump bio/pretext/map
([#2265](https://www.github.com/snakemake/snakemake-wrappers/issues/2265))
([c6c35f8](https://www.github.com/snakemake/snakemake-wrappers/commit/c6c35f805cd933957f83700ac36540f15ca34a0a))
* autobump bio/pretext/snapshot
([#2282](https://www.github.com/snakemake/snakemake-wrappers/issues/2282))
([a7358b9](https://www.github.com/snakemake/snakemake-wrappers/commit/a7358b9a2af8c34c9bd542b56aa4a49891d00ec2))
* autobump bio/prosolo/control-fdr
([#2268](https://www.github.com/snakemake/snakemake-wrappers/issues/2268))
([c55a9ec](https://www.github.com/snakemake/snakemake-wrappers/commit/c55a9ecdbd2bfaa73525192ca8bd2ca8d62d6471))
* autobump bio/prosolo/single-cell-bulk
([#2253](https://www.github.com/snakemake/snakemake-wrappers/issues/2253))
([03d4f9f](https://www.github.com/snakemake/snakemake-wrappers/commit/03d4f9f151edc5cdeee890510c37cd98bccc3b20))
* autobump bio/ptrimmer
([#2284](https://www.github.com/snakemake/snakemake-wrappers/issues/2284))
([105ffd9](https://www.github.com/snakemake/snakemake-wrappers/commit/105ffd973ec63a61a6a78a185a899ee1d40cf682))
* autobump bio/purge_dups/calcuts
([#2249](https://www.github.com/snakemake/snakemake-wrappers/issues/2249))
([72397c2](https://www.github.com/snakemake/snakemake-wrappers/commit/72397c20d4b8b1870c1588baf0aace517a03d1d6))
* autobump bio/purge_dups/get_seqs
([#2252](https://www.github.com/snakemake/snakemake-wrappers/issues/2252))
([25a113c](https://www.github.com/snakemake/snakemake-wrappers/commit/25a113cec300a14f805b588ac27b19dd94c28c87))
* autobump bio/purge_dups/ngscstat
([#2267](https://www.github.com/snakemake/snakemake-wrappers/issues/2267))
([f4e2068](https://www.github.com/snakemake/snakemake-wrappers/commit/f4e206860cec2518c14395278b509f6fab447b7b))
* autobump bio/purge_dups/pbcstat
([#2283](https://www.github.com/snakemake/snakemake-wrappers/issues/2283))
([3893aa0](https://www.github.com/snakemake/snakemake-wrappers/commit/3893aa0a90fa15bbf3cfccf2b0cfcb8c8c6f0c8b))
* autobump bio/purge_dups/purge_dups
([#2278](https://www.github.com/snakemake/snakemake-wrappers/issues/2278))
([a08e8f8](https://www.github.com/snakemake/snakemake-wrappers/commit/a08e8f83dbc62c06ceb5036c717f9d2b8e605f70))
* autobump bio/purge_dups/split_fa
([#2279](https://www.github.com/snakemake/snakemake-wrappers/issues/2279))
([26dbb9e](https://www.github.com/snakemake/snakemake-wrappers/commit/26dbb9e5e5fa5f5454a470fb9000b254c4d77130))
* autobump bio/pyroe/idtoname
([#2274](https://www.github.com/snakemake/snakemake-wrappers/issues/2274))
([76b9d89](https://www.github.com/snakemake/snakemake-wrappers/commit/76b9d8985f1a1d33b0815216404868e46b4c4d86))
* autobump bio/pyroe/makesplicedintronic
([#2255](https://www.github.com/snakemake/snakemake-wrappers/issues/2255))
([436c1f8](https://www.github.com/snakemake/snakemake-wrappers/commit/436c1f8cd2a5a0674dbff22e24d02eb8aac1c855))
* autobump bio/pyroe/makeunspliceunspliced
([#2260](https://www.github.com/snakemake/snakemake-wrappers/issues/2260))
([1da192d](https://www.github.com/snakemake/snakemake-wrappers/commit/1da192d80edc26fb03e8fa686cb40059ea535f35))
* autobump bio/ucsc/faToTwoBit
([#2286](https://www.github.com/snakemake/snakemake-wrappers/issues/2286))
([93ba408](https://www.github.com/snakemake/snakemake-wrappers/commit/93ba4089edf02360c7ba1c195f76e4785e02a694))
* autobump bio/ucsc/twoBitToFa
([#2287](https://www.github.com/snakemake/snakemake-wrappers/issues/2287))
([03447e8](https://www.github.com/snakemake/snakemake-wrappers/commit/03447e84d2184101967ad6bc75118a8cf1f28cf8))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

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