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fix: build docs on fork #1800

Merged

johanneskoester merged 1 commit into snakemake:master from Maarten-vd-Sande:fork_docs

Oct 4, 2023

Contributor

Maarten-vd-Sande commented Sep 13, 2023

Description

See #1799. Not sure if this is the solution you are looking for..


          build docs on fork

45d9c60

johanneskoester approved these changes

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johanneskoester merged commit d859765 into snakemake:master

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johanneskoester pushed a commit that referenced this pull request


          chore: release 2.6.1 (#1782)

🤖 I have created a release \*beep\* \*boop\*
---
###
[2.6.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.6.0...v2.6.1)
(2023-10-04)


### Bug Fixes

* build docs on fork
([#1800](https://www.github.com/snakemake/snakemake-wrappers/issues/1800))
([d859765](https://www.github.com/snakemake/snakemake-wrappers/commit/d85976505651052a00777fddcc0bf2178fbf0e4a))
* fix freebayes parallel
([#1807](https://www.github.com/snakemake/snakemake-wrappers/issues/1807))
([2aa2f62](https://www.github.com/snakemake/snakemake-wrappers/commit/2aa2f62af06213d3060378b5600c10d5e79787fa))
* Fix MultiQC output file issues
([#1796](https://www.github.com/snakemake/snakemake-wrappers/issues/1796))
([ecc45e8](https://www.github.com/snakemake/snakemake-wrappers/commit/ecc45e819f5e72b71ee777fa336da8c61a84758c))
* genomepy wrapper
([#1795](https://www.github.com/snakemake/snakemake-wrappers/issues/1795))
([53231a0](https://www.github.com/snakemake/snakemake-wrappers/commit/53231a0ef6b9e8045081456e2a129fccfb744f18))
* gffread - properly generate fasta output
([#1797](https://www.github.com/snakemake/snakemake-wrappers/issues/1797))
([89ea854](https://www.github.com/snakemake/snakemake-wrappers/commit/89ea854d1f2e26bed121650e3ae9f60a1ab84dec))


### Performance Improvements

* autobump bio/blast/makeblastdb
([#1786](https://www.github.com/snakemake/snakemake-wrappers/issues/1786))
([a5db830](https://www.github.com/snakemake/snakemake-wrappers/commit/a5db830243346385601ab9c0851f221276df3342))
* autobump bio/bwa-mem2/mem
([#1826](https://www.github.com/snakemake/snakemake-wrappers/issues/1826))
([37665c1](https://www.github.com/snakemake/snakemake-wrappers/commit/37665c12b4ba2760f0e078e781717ac9fa4efad8))
* autobump bio/bwa-memx/mem
([#1802](https://www.github.com/snakemake/snakemake-wrappers/issues/1802))
([9ceb997](https://www.github.com/snakemake/snakemake-wrappers/commit/9ceb9974e99677accdfdbca32e17c496f880a901))
* autobump bio/bwa/samse
([#1831](https://www.github.com/snakemake/snakemake-wrappers/issues/1831))
([8f93262](https://www.github.com/snakemake/snakemake-wrappers/commit/8f932627d344ded2331b396d6e585170bfaa4010))
* autobump bio/bwa/samxe
([#1833](https://www.github.com/snakemake/snakemake-wrappers/issues/1833))
([95799fc](https://www.github.com/snakemake/snakemake-wrappers/commit/95799fc241a2cfb541464cba62f63056b350a0b7))
* autobump bio/deeptools/alignmentsieve
([#1790](https://www.github.com/snakemake/snakemake-wrappers/issues/1790))
([cfa4cf7](https://www.github.com/snakemake/snakemake-wrappers/commit/cfa4cf7ca443a0d24858c804a55e563827e550b3))
* autobump bio/deeptools/alignmentsieve
([#1832](https://www.github.com/snakemake/snakemake-wrappers/issues/1832))
([2623b3a](https://www.github.com/snakemake/snakemake-wrappers/commit/2623b3afce1baada662237259f4c3d6c2b3a5d33))
* autobump bio/deeptools/computematrix
([#1784](https://www.github.com/snakemake/snakemake-wrappers/issues/1784))
([ccb2958](https://www.github.com/snakemake/snakemake-wrappers/commit/ccb2958e27d0ce3d5db13bbcf17581b3a6ccc0ae))
* autobump bio/deeptools/plotcoverage
([#1815](https://www.github.com/snakemake/snakemake-wrappers/issues/1815))
([693e904](https://www.github.com/snakemake/snakemake-wrappers/commit/693e90453a938806b7b395a9db6c0f773f50f866))
* autobump bio/deeptools/plotprofile
([#1830](https://www.github.com/snakemake/snakemake-wrappers/issues/1830))
([6f49c46](https://www.github.com/snakemake/snakemake-wrappers/commit/6f49c466ae3737afec0d3b4632625a9d4d62967d))
* autobump bio/deseq2/wald
([#1804](https://www.github.com/snakemake/snakemake-wrappers/issues/1804))
([fbc6345](https://www.github.com/snakemake/snakemake-wrappers/commit/fbc6345cdaee3c1452aba52dfa007603b90a5d4f))
* autobump bio/gatk/combinegvcfs
([#1817](https://www.github.com/snakemake/snakemake-wrappers/issues/1817))
([1cc8adc](https://www.github.com/snakemake/snakemake-wrappers/commit/1cc8adc07817b40746ec8ec58146e4f301ecf258))
* autobump bio/gatk3/baserecalibrator
([#1792](https://www.github.com/snakemake/snakemake-wrappers/issues/1792))
([7b1b2c3](https://www.github.com/snakemake/snakemake-wrappers/commit/7b1b2c3c7eb05867b5cc770a28f65323b2cc18c4))
* autobump bio/gatk3/indelrealigner
([#1835](https://www.github.com/snakemake/snakemake-wrappers/issues/1835))
([3d3d31c](https://www.github.com/snakemake/snakemake-wrappers/commit/3d3d31c9df0c9af9e1311cb691b7061c2f5a3fa9))
* autobump bio/gatk3/printreads
([#1839](https://www.github.com/snakemake/snakemake-wrappers/issues/1839))
([c1d182a](https://www.github.com/snakemake/snakemake-wrappers/commit/c1d182a1dbbe3a70c9b7db2fae50e73224cba021))
* autobump bio/gatk3/realignertargetcreator
([#1814](https://www.github.com/snakemake/snakemake-wrappers/issues/1814))
([0936b25](https://www.github.com/snakemake/snakemake-wrappers/commit/0936b25c211323af2cac819fc4d7982aad3bfa2c))
* autobump bio/gdc-api/bam-slicing
([#1806](https://www.github.com/snakemake/snakemake-wrappers/issues/1806))
([f723338](https://www.github.com/snakemake/snakemake-wrappers/commit/f72333859b9f536990c22899ae2a720010a91d5d))
* autobump bio/igv-reports
([#1788](https://www.github.com/snakemake/snakemake-wrappers/issues/1788))
([3ecdb17](https://www.github.com/snakemake/snakemake-wrappers/commit/3ecdb179679859e5ad8561f93c7476ef9430525c))
* autobump bio/meryl/count
([#1787](https://www.github.com/snakemake/snakemake-wrappers/issues/1787))
([486d99b](https://www.github.com/snakemake/snakemake-wrappers/commit/486d99ba318e6a7b806077003f97f7b693e98a1d))
* autobump bio/multiqc
([#1811](https://www.github.com/snakemake/snakemake-wrappers/issues/1811))
([221db0b](https://www.github.com/snakemake/snakemake-wrappers/commit/221db0b94a6a4f3658ce6a258bd868dc39ac79bd))
* autobump bio/pbmm2/align
([#1783](https://www.github.com/snakemake/snakemake-wrappers/issues/1783))
([756a11d](https://www.github.com/snakemake/snakemake-wrappers/commit/756a11d317cdd332771925ae910c25eef39ea83e))
* autobump bio/pbmm2/index
([#1801](https://www.github.com/snakemake/snakemake-wrappers/issues/1801))
([a91b214](https://www.github.com/snakemake/snakemake-wrappers/commit/a91b214b643452561bd3de81a6283c100471a427))
* autobump bio/picard/collectalignmentsummarymetrics
([#1803](https://www.github.com/snakemake/snakemake-wrappers/issues/1803))
([3d727b4](https://www.github.com/snakemake/snakemake-wrappers/commit/3d727b4559cb8c2eb2a98d714b6a5f54d336b9c4))
* autobump bio/picard/collectmultiplemetrics
([#1791](https://www.github.com/snakemake/snakemake-wrappers/issues/1791))
([a289b27](https://www.github.com/snakemake/snakemake-wrappers/commit/a289b276540d2da42920db86f9117090c8f39ddc))
* autobump bio/picard/collecttargetedpcrmetrics
([#1810](https://www.github.com/snakemake/snakemake-wrappers/issues/1810))
([c64d4fd](https://www.github.com/snakemake/snakemake-wrappers/commit/c64d4fdf2c3da9ad31b40317678da3bb9937cfef))
* autobump bio/picard/createsequencedictionary
([#1812](https://www.github.com/snakemake/snakemake-wrappers/issues/1812))
([3477e80](https://www.github.com/snakemake/snakemake-wrappers/commit/3477e80abdfa47c61f6c59c12530270fc81fd6ae))
* autobump bio/picard/markduplicates
([#1837](https://www.github.com/snakemake/snakemake-wrappers/issues/1837))
([4e6af3d](https://www.github.com/snakemake/snakemake-wrappers/commit/4e6af3d7ce8c5d72698233d0515286759df7e8e4))
* autobump bio/picard/mergesamfiles
([#1818](https://www.github.com/snakemake/snakemake-wrappers/issues/1818))
([0768970](https://www.github.com/snakemake/snakemake-wrappers/commit/07689707f145ad856a38dd47854b029421adf35c))
* autobump bio/picard/revertsam
([#1825](https://www.github.com/snakemake/snakemake-wrappers/issues/1825))
([042589a](https://www.github.com/snakemake/snakemake-wrappers/commit/042589af84f216d12ad33ab7219efa7551c463d0))
* autobump bio/picard/samtofastq
([#1824](https://www.github.com/snakemake/snakemake-wrappers/issues/1824))
([7a30dd8](https://www.github.com/snakemake/snakemake-wrappers/commit/7a30dd8191e4d0fb01a67dff22244ca9e0064bf3))
* autobump bio/picard/sortsam
([#1819](https://www.github.com/snakemake/snakemake-wrappers/issues/1819))
([a7e1233](https://www.github.com/snakemake/snakemake-wrappers/commit/a7e1233d34f17c6dce50bc49b1a9b29dee1a7c0c))
* autobump bio/samtools/idxstats
([#1780](https://www.github.com/snakemake/snakemake-wrappers/issues/1780))
([01985b9](https://www.github.com/snakemake/snakemake-wrappers/commit/01985b97b60be1ce4ca35958a5c4851ef98602dc))
* autobump bio/samtools/merge
([#1838](https://www.github.com/snakemake/snakemake-wrappers/issues/1838))
([8a3c3c9](https://www.github.com/snakemake/snakemake-wrappers/commit/8a3c3c9276f41e3f4fc9085aa20fb164b06576a8))
* autobump bio/seqkit
([#1805](https://www.github.com/snakemake/snakemake-wrappers/issues/1805))
([923c7ba](https://www.github.com/snakemake/snakemake-wrappers/commit/923c7bab7eb6dc4c8fb5825776c73c543e7a7207))
* autobump bio/spades/metaspades
([#1820](https://www.github.com/snakemake/snakemake-wrappers/issues/1820))
([755343f](https://www.github.com/snakemake/snakemake-wrappers/commit/755343f58a0ec67f3d346b00a7ec8482fd461fa0))
* autobump bio/sra-tools/fasterq-dump
([#1793](https://www.github.com/snakemake/snakemake-wrappers/issues/1793))
([873937e](https://www.github.com/snakemake/snakemake-wrappers/commit/873937e25308ede4a55fbf13698cb5e410aa8ad5))
* autobump bio/sra-tools/fasterq-dump
([#1813](https://www.github.com/snakemake/snakemake-wrappers/issues/1813))
([ffdb0a4](https://www.github.com/snakemake/snakemake-wrappers/commit/ffdb0a4e64c4e5fbd8169ed6968416f5100dc285))
* autobump bio/star/align
([#1829](https://www.github.com/snakemake/snakemake-wrappers/issues/1829))
([524917b](https://www.github.com/snakemake/snakemake-wrappers/commit/524917b4b8e0b02257cc02da5f128f2ef30ddd33))
* autobump bio/star/index
([#1836](https://www.github.com/snakemake/snakemake-wrappers/issues/1836))
([0530063](https://www.github.com/snakemake/snakemake-wrappers/commit/05300632895eb4b1250de91a51e2c42b6da62adc))
* autobump bio/varscan/mpileup2indel
([#1821](https://www.github.com/snakemake/snakemake-wrappers/issues/1821))
([cb2adbe](https://www.github.com/snakemake/snakemake-wrappers/commit/cb2adbe5cf4e0c73bd99f7454cdb2f64e66e1299))
* autobump bio/varscan/mpileup2snp
([#1827](https://www.github.com/snakemake/snakemake-wrappers/issues/1827))
([40545ad](https://www.github.com/snakemake/snakemake-wrappers/commit/40545ad04b7bc37f36d97f562f19028b9d7e71ee))
* autobump bio/varscan/somatic
([#1834](https://www.github.com/snakemake/snakemake-wrappers/issues/1834))
([a830aa7](https://www.github.com/snakemake/snakemake-wrappers/commit/a830aa7344c7edc8333d256c3fbf1ce2fb717e2a))
* autobump bio/vg/construct
([#1779](https://www.github.com/snakemake/snakemake-wrappers/issues/1779))
([0a9bf2d](https://www.github.com/snakemake/snakemake-wrappers/commit/0a9bf2da9b053473069ac119db2a574790aa1112))
* autobump bio/vg/ids
([#1781](https://www.github.com/snakemake/snakemake-wrappers/issues/1781))
([eb1e70e](https://www.github.com/snakemake/snakemake-wrappers/commit/eb1e70e7a0ce12c31be75d3ab682c9458164b9cd))
* autobump bio/vg/kmers
([#1828](https://www.github.com/snakemake/snakemake-wrappers/issues/1828))
([5903848](https://www.github.com/snakemake/snakemake-wrappers/commit/5903848e1ac52f75c53fbd743f9847fe37a4be79))
* autobump bio/vg/merge
([#1816](https://www.github.com/snakemake/snakemake-wrappers/issues/1816))
([6feb18f](https://www.github.com/snakemake/snakemake-wrappers/commit/6feb18fd1eb09b139c7c6018273afc9903d99fe2))
* autobump bio/vg/sim
([#1785](https://www.github.com/snakemake/snakemake-wrappers/issues/1785))
([951ca2f](https://www.github.com/snakemake/snakemake-wrappers/commit/951ca2f81f2a03044af582fcc072f4dd7363c4a4))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

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