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feat: add galah wrapper #1754
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feat: add galah wrapper #1754
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dlaehnemann
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Aug 24, 2023
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Nice and clean, just one very minor suggestion (which is a matter of style / taste, I guess). Thanks!
Co-authored-by: David Laehnemann <david.laehnemann@hhu.de>
johanneskoester
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Aug 25, 2023
🤖 I have created a release \*beep\* \*boop\* --- ## [2.6.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.5.0...v2.6.0) (2023-08-25) ### Features * add galah wrapper ([#1754](https://www.github.com/snakemake/snakemake-wrappers/issues/1754)) ([083688a](https://www.github.com/snakemake/snakemake-wrappers/commit/083688a059439b1b886ac2db95fd53530d5bef11)) * Enhanced-volcano ([#1521](https://www.github.com/snakemake/snakemake-wrappers/issues/1521)) ([0bd316d](https://www.github.com/snakemake/snakemake-wrappers/commit/0bd316db902ed47d36250b4464f5d8710b295a61)) * Immunedeconv ([#1741](https://www.github.com/snakemake/snakemake-wrappers/issues/1741)) ([97b5bde](https://www.github.com/snakemake/snakemake-wrappers/commit/97b5bdec2bcff9b26de7e6889cba72521b845e99)) ### Bug Fixes * Bwa mem threads ([#1743](https://www.github.com/snakemake/snakemake-wrappers/issues/1743)) ([e35e312](https://www.github.com/snakemake/snakemake-wrappers/commit/e35e31219af8e7bf7b2f7174ddd7ade93abf7cad)) ### Performance Improvements * autobump bio/hifiasm ([#1768](https://www.github.com/snakemake/snakemake-wrappers/issues/1768)) ([5795e2c](https://www.github.com/snakemake/snakemake-wrappers/commit/5795e2c31d0d6742908223fb7ff86fb186dd09f5)) * autobump bio/sourmash/compute ([#1767](https://www.github.com/snakemake/snakemake-wrappers/issues/1767)) ([412f289](https://www.github.com/snakemake/snakemake-wrappers/commit/412f2892dc44c7218656b23dc6d83cb15e15eae0)) * autobump bio/vg/prune ([#1769](https://www.github.com/snakemake/snakemake-wrappers/issues/1769)) ([fe30289](https://www.github.com/snakemake/snakemake-wrappers/commit/fe302896b2550585c257ac0311ed9c5ee462a2dd)) * update datavzrd 2.23.8 ([#1764](https://www.github.com/snakemake/snakemake-wrappers/issues/1764)) ([2f76671](https://www.github.com/snakemake/snakemake-wrappers/commit/2f766717bbf35dfaf748c02757b4f5eef0ff96ba)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Description
QC
For all wrappers added by this PR,
input:
andoutput:
file paths in the resulting rule can be changed arbitrarily,threads: x
statement withx
being a reasonable default,map_reads
for a step that maps reads),environment.yaml
specifications follow the respective best practices,input:
oroutput:
),Snakefile
s and their entries are explained via comments (input:
/output:
/params:
etc.),stderr
and/orstdout
are logged correctly (log:
), depending on the wrapped tool,tempfile.gettempdir()
points to (see here; this also means that using any Pythontempfile
default behavior works),meta.yaml
contains a link to the documentation of the respective tool or command,Snakefile
s pass the linting (snakemake --lint
),Snakefile
s are formatted with snakefmt,