perf: autobump bio/qualimap/bamqc #1471
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johanneskoester
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Jun 30, 2023
🤖 I have created a release \*beep\* \*boop\* --- ### [2.1.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.1.0...v2.1.1) (2023-06-30) ### Bug Fixes * bug with -O being used for gap opening penalty and samtools output directory ([#1450](https://www.github.com/snakemake/snakemake-wrappers/issues/1450)) ([c3f227f](https://www.github.com/snakemake/snakemake-wrappers/commit/c3f227ff64ee0d694587b50340424447ee847746)) ### Performance Improvements * autobump bio/bcftools/mpileup ([#1483](https://www.github.com/snakemake/snakemake-wrappers/issues/1483)) ([438c39b](https://www.github.com/snakemake/snakemake-wrappers/commit/438c39bd15816b068193664bb37ec8dfd1e21b00)) * autobump bio/bcftools/view ([#1469](https://www.github.com/snakemake/snakemake-wrappers/issues/1469)) ([1025cee](https://www.github.com/snakemake/snakemake-wrappers/commit/1025cee51c5fdb005610781f394e36f77d3a4fad)) * autobump bio/bedtools/coveragebed ([#1487](https://www.github.com/snakemake/snakemake-wrappers/issues/1487)) ([b9b6123](https://www.github.com/snakemake/snakemake-wrappers/commit/b9b612307055dfc9ee3cf8a6aa6cf51419a1a9de)) * autobump bio/bismark/bam2nuc ([#1491](https://www.github.com/snakemake/snakemake-wrappers/issues/1491)) ([b7fe91a](https://www.github.com/snakemake/snakemake-wrappers/commit/b7fe91a39563ad2839d835128a126ff4b7a16833)) * autobump bio/diamond/makedb ([#1495](https://www.github.com/snakemake/snakemake-wrappers/issues/1495)) ([5885a0e](https://www.github.com/snakemake/snakemake-wrappers/commit/5885a0e6d00b1005d2ecef4679cfac0119404f10)) * autobump bio/freebayes ([#1478](https://www.github.com/snakemake/snakemake-wrappers/issues/1478)) ([dd4c02b](https://www.github.com/snakemake/snakemake-wrappers/commit/dd4c02b81c920e69826c3a86e7ef9f9074b2e76f)) * autobump bio/gatk/applybqsr ([#1470](https://www.github.com/snakemake/snakemake-wrappers/issues/1470)) ([7aca9d9](https://www.github.com/snakemake/snakemake-wrappers/commit/7aca9d992096602f4bdf6ec252aa2376c0bfc990)) * autobump bio/gatk/estimatelibrarycomplexity ([#1484](https://www.github.com/snakemake/snakemake-wrappers/issues/1484)) ([b06df5f](https://www.github.com/snakemake/snakemake-wrappers/commit/b06df5fd5096097902ef26ffe07520a6728d6850)) * autobump bio/gatk/genomicsdbimport ([#1492](https://www.github.com/snakemake/snakemake-wrappers/issues/1492)) ([826e722](https://www.github.com/snakemake/snakemake-wrappers/commit/826e722ee20720483b6a2a894482cde9268dfd18)) * autobump bio/gatk/intervallisttobed ([#1473](https://www.github.com/snakemake/snakemake-wrappers/issues/1473)) ([214dd6b](https://www.github.com/snakemake/snakemake-wrappers/commit/214dd6bb41ae07d985d603f7f04e53139ac0ee50)) * autobump bio/gatk/learnreadorientationmodel ([#1494](https://www.github.com/snakemake/snakemake-wrappers/issues/1494)) ([e2623fd](https://www.github.com/snakemake/snakemake-wrappers/commit/e2623fd5111df37291918ca6768279ae98f0b694)) * autobump bio/gatk/splitintervals ([#1481](https://www.github.com/snakemake/snakemake-wrappers/issues/1481)) ([444dda4](https://www.github.com/snakemake/snakemake-wrappers/commit/444dda46364af8f2ed6baa42b6f0586b51b4808f)) * autobump bio/gatk/variantannotator ([#1489](https://www.github.com/snakemake/snakemake-wrappers/issues/1489)) ([03b3fb5](https://www.github.com/snakemake/snakemake-wrappers/commit/03b3fb581e4bb062ce2128215a898c692650343f)) * autobump bio/gatk/variantrecalibrator ([#1496](https://www.github.com/snakemake/snakemake-wrappers/issues/1496)) ([3748dec](https://www.github.com/snakemake/snakemake-wrappers/commit/3748dec7b916254d8777c16c37114b8d0a618476)) * autobump bio/minimap2/aligner ([#1477](https://www.github.com/snakemake/snakemake-wrappers/issues/1477)) ([75c6265](https://www.github.com/snakemake/snakemake-wrappers/commit/75c6265df3f888acd849a1617164b51c42cd3a0d)) * autobump bio/picard/collectalignmentsummarymetrics ([#1475](https://www.github.com/snakemake/snakemake-wrappers/issues/1475)) ([06e9c4b](https://www.github.com/snakemake/snakemake-wrappers/commit/06e9c4be45b3c6596e9c0fdde2eacb6eb2a83bdb)) * autobump bio/picard/mergevcfs ([#1465](https://www.github.com/snakemake/snakemake-wrappers/issues/1465)) ([dbbc182](https://www.github.com/snakemake/snakemake-wrappers/commit/dbbc182bab3b3496a1cbbbf11816382a93fcc5f2)) * autobump bio/pretext/map ([#1493](https://www.github.com/snakemake/snakemake-wrappers/issues/1493)) ([7fcae7f](https://www.github.com/snakemake/snakemake-wrappers/commit/7fcae7f60fbbdc7073af5e31b1bd1dbc2dacf96b)) * autobump bio/qualimap/bamqc ([#1471](https://www.github.com/snakemake/snakemake-wrappers/issues/1471)) ([4fe5fdc](https://www.github.com/snakemake/snakemake-wrappers/commit/4fe5fdcb0a4aaa0229c52d50188402030ed656c3)) * autobump bio/samtools/depth ([#1486](https://www.github.com/snakemake/snakemake-wrappers/issues/1486)) ([6d23daf](https://www.github.com/snakemake/snakemake-wrappers/commit/6d23daf52b1746f64ffb4f01f66202cd38bdb12f)) * autobump bio/samtools/stats ([#1468](https://www.github.com/snakemake/snakemake-wrappers/issues/1468)) ([adc059b](https://www.github.com/snakemake/snakemake-wrappers/commit/adc059b4758b1374eb445d0652194b68a8826a14)) * autobump bio/snpsift/annotate ([#1480](https://www.github.com/snakemake/snakemake-wrappers/issues/1480)) ([a60f667](https://www.github.com/snakemake/snakemake-wrappers/commit/a60f66793d05dd707b8834041cb69a0c325fe49b)) * autobump bio/snpsift/dbnsfp ([#1490](https://www.github.com/snakemake/snakemake-wrappers/issues/1490)) ([8e8af31](https://www.github.com/snakemake/snakemake-wrappers/commit/8e8af3118fc6e8f6eeb00bd3412e780f775d36e1)) * autobump bio/varscan/mpileup2indel ([#1472](https://www.github.com/snakemake/snakemake-wrappers/issues/1472)) ([c0a7c47](https://www.github.com/snakemake/snakemake-wrappers/commit/c0a7c475e70e978cbe46e67afa3b70bc16019dfb)) * autobump bio/varscan/mpileup2snp ([#1476](https://www.github.com/snakemake/snakemake-wrappers/issues/1476)) ([a439e5f](https://www.github.com/snakemake/snakemake-wrappers/commit/a439e5f8b8a5362c28751079beb544964a0af7a4)) * autobump bio/varscan/somatic ([#1482](https://www.github.com/snakemake/snakemake-wrappers/issues/1482)) ([18671ad](https://www.github.com/snakemake/snakemake-wrappers/commit/18671adc6821aad751a67845b0e453456bea6475)) * autobump bio/vg/kmers ([#1479](https://www.github.com/snakemake/snakemake-wrappers/issues/1479)) ([aa00d14](https://www.github.com/snakemake/snakemake-wrappers/commit/aa00d1488989e64ce215672c86bbc94d169f6f33)) * autobump bio/xsv ([#1485](https://www.github.com/snakemake/snakemake-wrappers/issues/1485)) ([a0baa27](https://www.github.com/snakemake/snakemake-wrappers/commit/a0baa27897c3e11d439a5bbb3dd138029d869afe)) * update datavzrd ([#1497](https://www.github.com/snakemake/snakemake-wrappers/issues/1497)) ([143a9c8](https://www.github.com/snakemake/snakemake-wrappers/commit/143a9c8caadb5f4391b351dfc0786c896c751c3f)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic update of bio/qualimap/bamqc.