perf: autobump bio/samtools/index #1214
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johanneskoester
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🤖 I have created a release \*beep\* \*boop\* --- ## [1.26.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.25.0...v1.26.0) (2023-04-21) ### Features * added vsearch wrapper ([#1149](https://www.github.com/snakemake/snakemake-wrappers/issues/1149)) ([79342b7](https://www.github.com/snakemake/snakemake-wrappers/commit/79342b73df13b135e09dd61da5d185f84c20f6a1)) * also define overhang on params.extra ([#1173](https://www.github.com/snakemake/snakemake-wrappers/issues/1173)) ([7e63821](https://www.github.com/snakemake/snakemake-wrappers/commit/7e6382183ea02e086360dba5946a8725a3cdc98d)) * automate inference of index name ([#1169](https://www.github.com/snakemake/snakemake-wrappers/issues/1169)) ([0d2c92a](https://www.github.com/snakemake/snakemake-wrappers/commit/0d2c92a5be480dd60cdb1c422282b9812aa01e2f)) * Enhance deeptools compute matrix ([#1236](https://www.github.com/snakemake/snakemake-wrappers/issues/1236)) ([a44bef5](https://www.github.com/snakemake/snakemake-wrappers/commit/a44bef54526ea07da64305147aa8cfa9f74497a9)) * Lofreq indelqual wrapper ([#1166](https://www.github.com/snakemake/snakemake-wrappers/issues/1166)) ([e2215f2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2215f2e3cc18ed0ee165a440c3bb1752babab59)) * update datavzrd 2.18.1 ([#1171](https://www.github.com/snakemake/snakemake-wrappers/issues/1171)) ([00b9b1c](https://www.github.com/snakemake/snakemake-wrappers/commit/00b9b1cfac184303f70716749977e0343a09e8d0)) ### Bug Fixes * allow for arbitrary filename prefixes in the optitype wrapper ([#500](https://www.github.com/snakemake/snakemake-wrappers/issues/500)) ([0bf7175](https://www.github.com/snakemake/snakemake-wrappers/commit/0bf71755787c9c207f578d74007948ec7f89dfa8)) ### Performance Improvements * autobump bio/bazam ([#1187](https://www.github.com/snakemake/snakemake-wrappers/issues/1187)) ([df7d90e](https://www.github.com/snakemake/snakemake-wrappers/commit/df7d90e18cb33d3bd57c8720ab00971a26ee952a)) * autobump bio/bbtools/bbduk ([#1269](https://www.github.com/snakemake/snakemake-wrappers/issues/1269)) ([86c7a0a](https://www.github.com/snakemake/snakemake-wrappers/commit/86c7a0ac481bbb643a1d5460cc6668e134dc74e4)) * autobump bio/bcftools/call ([#1181](https://www.github.com/snakemake/snakemake-wrappers/issues/1181)) ([7fbc611](https://www.github.com/snakemake/snakemake-wrappers/commit/7fbc61182b3f9163c946306ec01ffd3575988970)) * autobump bio/bcftools/concat ([#1183](https://www.github.com/snakemake/snakemake-wrappers/issues/1183)) ([93d7103](https://www.github.com/snakemake/snakemake-wrappers/commit/93d71037234a1162036225065ac2ec329f1d1c34)) * autobump bio/bcftools/index ([#1279](https://www.github.com/snakemake/snakemake-wrappers/issues/1279)) ([3affe33](https://www.github.com/snakemake/snakemake-wrappers/commit/3affe33f6ed69becd7317b015e40ac2b4d7ac125)) * autobump bio/bcftools/merge ([#1266](https://www.github.com/snakemake/snakemake-wrappers/issues/1266)) ([b0a2c88](https://www.github.com/snakemake/snakemake-wrappers/commit/b0a2c88ac6239b55ac6638d35f80946c839220cd)) * autobump bio/bcftools/norm ([#1192](https://www.github.com/snakemake/snakemake-wrappers/issues/1192)) ([9e06c59](https://www.github.com/snakemake/snakemake-wrappers/commit/9e06c59da15866ea0f6c4793e053cb5169815fcd)) * autobump bio/bcftools/norm ([#1212](https://www.github.com/snakemake/snakemake-wrappers/issues/1212)) ([3667c6b](https://www.github.com/snakemake/snakemake-wrappers/commit/3667c6b1d3f824f4153212c18b9abbcca19a31e7)) * autobump bio/bcftools/sort ([#1257](https://www.github.com/snakemake/snakemake-wrappers/issues/1257)) ([dd478d2](https://www.github.com/snakemake/snakemake-wrappers/commit/dd478d216b6865a8828728a51354ad09ab286967)) * autobump bio/bcftools/stats ([#1197](https://www.github.com/snakemake/snakemake-wrappers/issues/1197)) ([c844da5](https://www.github.com/snakemake/snakemake-wrappers/commit/c844da5a713c588f3aaacd0d17494312c0901b43)) * autobump bio/bellerophon ([#1199](https://www.github.com/snakemake/snakemake-wrappers/issues/1199)) ([a2fe593](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe593f4e4f98dd3a135617129c817669f83b71)) * autobump bio/bellerophon ([#1286](https://www.github.com/snakemake/snakemake-wrappers/issues/1286)) ([2a21d19](https://www.github.com/snakemake/snakemake-wrappers/commit/2a21d1948ce87e13f781309e73ed42dadf297d15)) * autobump bio/bismark/bismark_genome_preparation ([#1276](https://www.github.com/snakemake/snakemake-wrappers/issues/1276)) ([5074972](https://www.github.com/snakemake/snakemake-wrappers/commit/507497256b9bf5b4d296ca105696e6bd4532b118)) * autobump bio/bismark/bismark_methylation_extractor ([#1220](https://www.github.com/snakemake/snakemake-wrappers/issues/1220)) ([05964de](https://www.github.com/snakemake/snakemake-wrappers/commit/05964de5e1e9c738654bd18c8f07cecf2626711b)) * autobump bio/bismark/bismark2bedGraph ([#1258](https://www.github.com/snakemake/snakemake-wrappers/issues/1258)) ([3eb60c2](https://www.github.com/snakemake/snakemake-wrappers/commit/3eb60c226ed74464e3b31b16c22cc5d99cf465e5)) * autobump bio/bismark/bismark2summary ([#1235](https://www.github.com/snakemake/snakemake-wrappers/issues/1235)) ([74a9de2](https://www.github.com/snakemake/snakemake-wrappers/commit/74a9de2c0896bc4ced38561bfa978bd99bd01e02)) * autobump bio/bowtie2/align ([#1206](https://www.github.com/snakemake/snakemake-wrappers/issues/1206)) ([d3544b0](https://www.github.com/snakemake/snakemake-wrappers/commit/d3544b024545620f4f17ca390d1466cebf5bca21)) * autobump bio/busco ([#1255](https://www.github.com/snakemake/snakemake-wrappers/issues/1255)) ([402aaaa](https://www.github.com/snakemake/snakemake-wrappers/commit/402aaaaf2cbbc47314db353905292a6e572ceb61)) * autobump bio/bwa-mem2/mem ([#1202](https://www.github.com/snakemake/snakemake-wrappers/issues/1202)) ([90e1d60](https://www.github.com/snakemake/snakemake-wrappers/commit/90e1d60c7f9f9c518814196f2e9d94b9a7fb6496)) * autobump bio/bwa-meme/index ([#1180](https://www.github.com/snakemake/snakemake-wrappers/issues/1180)) ([1f0378c](https://www.github.com/snakemake/snakemake-wrappers/commit/1f0378cdb6ed256362cf753fdba82d6f71677307)) * autobump bio/bwa-meme/mem ([#1163](https://www.github.com/snakemake/snakemake-wrappers/issues/1163)) ([5236667](https://www.github.com/snakemake/snakemake-wrappers/commit/52366674dbfaac0796041db97397e10b216bdf1a)) * autobump bio/bwa-meme/mem ([#1231](https://www.github.com/snakemake/snakemake-wrappers/issues/1231)) ([1ad2b8d](https://www.github.com/snakemake/snakemake-wrappers/commit/1ad2b8deb38664ebd2c92d67ce77fc095b6a4a18)) * autobump bio/bwa-memx/index ([#1207](https://www.github.com/snakemake/snakemake-wrappers/issues/1207)) ([59be498](https://www.github.com/snakemake/snakemake-wrappers/commit/59be498ccf3c3eb267c27db84ddbb4ad78157d29)) * autobump bio/bwa-memx/mem ([#1268](https://www.github.com/snakemake/snakemake-wrappers/issues/1268)) ([a2fe8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe8b975f3ac9e61cdcea172e506292b6a69a97)) * autobump bio/bwa/sampe ([#1225](https://www.github.com/snakemake/snakemake-wrappers/issues/1225)) ([d759781](https://www.github.com/snakemake/snakemake-wrappers/commit/d759781ec230084724d3dad2005aee196c135889)) * autobump bio/cutadapt/pe ([#1219](https://www.github.com/snakemake/snakemake-wrappers/issues/1219)) ([44f346e](https://www.github.com/snakemake/snakemake-wrappers/commit/44f346e2094a5d1c69d4bad14c98dfe3fb641b57)) * autobump bio/cutadapt/se ([#1253](https://www.github.com/snakemake/snakemake-wrappers/issues/1253)) ([95c8278](https://www.github.com/snakemake/snakemake-wrappers/commit/95c8278409f14990147d501a019cbe875ad4b28b)) * autobump bio/delly ([#1267](https://www.github.com/snakemake/snakemake-wrappers/issues/1267)) ([75a0d1a](https://www.github.com/snakemake/snakemake-wrappers/commit/75a0d1a0a2b03622f76f814258719c396691e5c7)) * autobump bio/diamond/blastp ([#1161](https://www.github.com/snakemake/snakemake-wrappers/issues/1161)) ([1f89877](https://www.github.com/snakemake/snakemake-wrappers/commit/1f898770af5b3c41135ede213508885bb214ab5f)) * autobump bio/diamond/blastx ([#1221](https://www.github.com/snakemake/snakemake-wrappers/issues/1221)) ([480fc20](https://www.github.com/snakemake/snakemake-wrappers/commit/480fc206378e088a1c7a46e71523a63bb7fe048a)) * autobump bio/diamond/makedb ([#1223](https://www.github.com/snakemake/snakemake-wrappers/issues/1223)) ([49d1484](https://www.github.com/snakemake/snakemake-wrappers/commit/49d14842fa6be1be1ed439b1107b3b4a952f6e45)) * autobump bio/fgbio/collectduplexseqmetrics ([#1201](https://www.github.com/snakemake/snakemake-wrappers/issues/1201)) ([04e4ec7](https://www.github.com/snakemake/snakemake-wrappers/commit/04e4ec73d53f15993ad55563c9477fb2885ff0f8)) * autobump bio/gatk/applybqsrspark ([#1194](https://www.github.com/snakemake/snakemake-wrappers/issues/1194)) ([65f53d8](https://www.github.com/snakemake/snakemake-wrappers/commit/65f53d89cee7a2b7903891fd33b40a33fd328c2f)) * autobump bio/gatk/applybqsrspark ([#1250](https://www.github.com/snakemake/snakemake-wrappers/issues/1250)) ([56efdd1](https://www.github.com/snakemake/snakemake-wrappers/commit/56efdd137d91a8bcbeebcfdb1591a5f7ccba2c32)) * autobump bio/gatk/applyvqsr ([#1274](https://www.github.com/snakemake/snakemake-wrappers/issues/1274)) ([8b8d890](https://www.github.com/snakemake/snakemake-wrappers/commit/8b8d89097eeccf042c848eab72ef2f3d964d2714)) * autobump bio/gatk/baserecalibrator ([#1249](https://www.github.com/snakemake/snakemake-wrappers/issues/1249)) ([788ed8f](https://www.github.com/snakemake/snakemake-wrappers/commit/788ed8f9d5c9fbdceece90cf2f53ca02dfa0bc14)) * autobump bio/gatk/baserecalibratorspark ([#1185](https://www.github.com/snakemake/snakemake-wrappers/issues/1185)) ([f5a5f47](https://www.github.com/snakemake/snakemake-wrappers/commit/f5a5f47382b2a7d9fce892d5564b8ef73dae9b0e)) * autobump bio/gatk/combinegvcfs ([#1261](https://www.github.com/snakemake/snakemake-wrappers/issues/1261)) ([bd3066a](https://www.github.com/snakemake/snakemake-wrappers/commit/bd3066a4b8444e00ed6fefa6d6aab8483d73f5fe)) * autobump bio/gatk/estimatelibrarycomplexity ([#1252](https://www.github.com/snakemake/snakemake-wrappers/issues/1252)) ([12f5440](https://www.github.com/snakemake/snakemake-wrappers/commit/12f54404f391cdd250471bde20442e131ce62e5b)) * autobump bio/gatk/filtermutectcalls ([#1155](https://www.github.com/snakemake/snakemake-wrappers/issues/1155)) ([0071533](https://www.github.com/snakemake/snakemake-wrappers/commit/00715334b70c8b0e2ae1e52b47351320fe8157af)) * autobump bio/gatk/filtermutectcalls ([#1195](https://www.github.com/snakemake/snakemake-wrappers/issues/1195)) ([7f05ddf](https://www.github.com/snakemake/snakemake-wrappers/commit/7f05ddf98bf36db83fb4846188f0b512cd08b68f)) * autobump bio/gatk/genomicsdbimport ([#1215](https://www.github.com/snakemake/snakemake-wrappers/issues/1215)) ([300dbe8](https://www.github.com/snakemake/snakemake-wrappers/commit/300dbe83c2ed9e573318a8b30fd22293541695ab)) * autobump bio/gatk/genotypegvcfs ([#1179](https://www.github.com/snakemake/snakemake-wrappers/issues/1179)) ([85758b7](https://www.github.com/snakemake/snakemake-wrappers/commit/85758b7f4d36fb40b9e9826200cba5cf5e95b29b)) * autobump bio/gatk/getpileupsummaries ([#1277](https://www.github.com/snakemake/snakemake-wrappers/issues/1277)) ([2239049](https://www.github.com/snakemake/snakemake-wrappers/commit/2239049edb6f3324cec7d43f9ecd50cdea30e6d4)) * autobump bio/gatk/haplotypecaller ([#1256](https://www.github.com/snakemake/snakemake-wrappers/issues/1256)) ([5caa178](https://www.github.com/snakemake/snakemake-wrappers/commit/5caa178fbcbc1dca8444f6a238c868d096b3785a)) * autobump bio/gatk/learnreadorientationmodel ([#1158](https://www.github.com/snakemake/snakemake-wrappers/issues/1158)) ([97cd747](https://www.github.com/snakemake/snakemake-wrappers/commit/97cd7470196fa28fa229361b81cc10466f87b495)) * autobump bio/gatk/leftalignandtrimvariants ([#1205](https://www.github.com/snakemake/snakemake-wrappers/issues/1205)) ([377f253](https://www.github.com/snakemake/snakemake-wrappers/commit/377f2533992ff68f563faed1a37059aeadf041bb)) * autobump bio/gatk/markduplicatesspark ([#1224](https://www.github.com/snakemake/snakemake-wrappers/issues/1224)) ([0893b4e](https://www.github.com/snakemake/snakemake-wrappers/commit/0893b4ec8d1cfecfc2a80c77e6170bbe2bbc981e)) * autobump bio/gatk/mutect ([#1262](https://www.github.com/snakemake/snakemake-wrappers/issues/1262)) ([a01e719](https://www.github.com/snakemake/snakemake-wrappers/commit/a01e7190abb6f08f8fbcd54d886d36b752171165)) * autobump bio/gatk/splitintervals ([#1188](https://www.github.com/snakemake/snakemake-wrappers/issues/1188)) ([2d610dd](https://www.github.com/snakemake/snakemake-wrappers/commit/2d610dd129d1b179ff550932416a0dcec6991cb9)) * autobump bio/gatk/variantannotator ([#1160](https://www.github.com/snakemake/snakemake-wrappers/issues/1160)) ([f7001e2](https://www.github.com/snakemake/snakemake-wrappers/commit/f7001e2c2a6ce9e3fef0fe700bb1a37c56d86c22)) * autobump bio/gatk/variantannotator ([#1282](https://www.github.com/snakemake/snakemake-wrappers/issues/1282)) ([a158262](https://www.github.com/snakemake/snakemake-wrappers/commit/a1582620d1c628988075455fb9e9d1b6f76ea09e)) * autobump bio/gatk3/baserecalibrator ([#1273](https://www.github.com/snakemake/snakemake-wrappers/issues/1273)) ([63e7ae2](https://www.github.com/snakemake/snakemake-wrappers/commit/63e7ae2258533c1bb7676d24e6eb163dcafb1801)) * autobump bio/gatk3/printreads ([#1174](https://www.github.com/snakemake/snakemake-wrappers/issues/1174)) ([22f8e69](https://www.github.com/snakemake/snakemake-wrappers/commit/22f8e696259744d09af4d07053bbe1124f5ca0e5)) * autobump bio/gatk3/printreads ([#1217](https://www.github.com/snakemake/snakemake-wrappers/issues/1217)) ([5d05b88](https://www.github.com/snakemake/snakemake-wrappers/commit/5d05b8828266a4a33dbeb80900faf6f2df971c7d)) * autobump bio/gdc-api/bam-slicing ([#1159](https://www.github.com/snakemake/snakemake-wrappers/issues/1159)) ([96a1a42](https://www.github.com/snakemake/snakemake-wrappers/commit/96a1a42b672bdf9fca9a8e8ef5d140cc02d93753)) * autobump bio/hisat2/align ([#1281](https://www.github.com/snakemake/snakemake-wrappers/issues/1281)) ([a9edff7](https://www.github.com/snakemake/snakemake-wrappers/commit/a9edff748a9eead75e1e43ae5601e7a8c814d221)) * autobump bio/homer/makeTagDirectory ([#1246](https://www.github.com/snakemake/snakemake-wrappers/issues/1246)) ([44847e2](https://www.github.com/snakemake/snakemake-wrappers/commit/44847e2ef5f63c51f03a2370a0d6768dc49fed46)) * autobump bio/last/lastal ([#1165](https://www.github.com/snakemake/snakemake-wrappers/issues/1165)) ([ca0d13f](https://www.github.com/snakemake/snakemake-wrappers/commit/ca0d13fad8396327826d41d394861809305c87d5)) * autobump bio/last/lastdb ([#1254](https://www.github.com/snakemake/snakemake-wrappers/issues/1254)) ([2f11b1e](https://www.github.com/snakemake/snakemake-wrappers/commit/2f11b1e181be6435687bf28ac00c4183ea2868d9)) * autobump bio/lofreq/call ([#1156](https://www.github.com/snakemake/snakemake-wrappers/issues/1156)) ([c750bbf](https://www.github.com/snakemake/snakemake-wrappers/commit/c750bbf2b0fd45abd3d0ba8b926a6cf404b38c0d)) * autobump bio/lofreq/call ([#1275](https://www.github.com/snakemake/snakemake-wrappers/issues/1275)) ([e2c4dc2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2c4dc2e8d79f65af02860f5c762bc2a6a3372ab)) * autobump bio/lofreq/indelqual ([#1283](https://www.github.com/snakemake/snakemake-wrappers/issues/1283)) ([9730460](https://www.github.com/snakemake/snakemake-wrappers/commit/9730460bd457d8b0a8163d49b592d446fe412ae6)) * autobump bio/mashmap ([#1244](https://www.github.com/snakemake/snakemake-wrappers/issues/1244)) ([fad0092](https://www.github.com/snakemake/snakemake-wrappers/commit/fad0092b61dba723b7d653894950121553f5b126)) * autobump bio/microphaser/filter ([#1164](https://www.github.com/snakemake/snakemake-wrappers/issues/1164)) ([8932d38](https://www.github.com/snakemake/snakemake-wrappers/commit/8932d3882426094d0de56fc32c8e9b81a72c37e5)) * autobump bio/minimap2/aligner ([#1177](https://www.github.com/snakemake/snakemake-wrappers/issues/1177)) ([07f4e02](https://www.github.com/snakemake/snakemake-wrappers/commit/07f4e0238bd7c9207aa6c56744dcfe9c5090f7b5)) * autobump bio/open-cravat/module ([#1232](https://www.github.com/snakemake/snakemake-wrappers/issues/1232)) ([be62998](https://www.github.com/snakemake/snakemake-wrappers/commit/be629987465b94a9f616c3754af8349d33dd875a)) * autobump bio/paladin/align ([#1234](https://www.github.com/snakemake/snakemake-wrappers/issues/1234)) ([df3c213](https://www.github.com/snakemake/snakemake-wrappers/commit/df3c213a390bd4a9fdebb809ecf31debef74b8f7)) * autobump bio/picard/collectalignmentsummarymetrics ([#1175](https://www.github.com/snakemake/snakemake-wrappers/issues/1175)) ([856224a](https://www.github.com/snakemake/snakemake-wrappers/commit/856224a4db42aa3ea9937c39745a1c7dfab7ff20)) * autobump bio/picard/collectgcbiasmetrics ([#1247](https://www.github.com/snakemake/snakemake-wrappers/issues/1247)) ([202ab81](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab81a08990a4d9c2b6915130430928c3414e0)) * autobump bio/picard/collecthsmetrics ([#1198](https://www.github.com/snakemake/snakemake-wrappers/issues/1198)) ([874fc3f](https://www.github.com/snakemake/snakemake-wrappers/commit/874fc3f6ab40df13dcc3be0a8f68510c2da555f2)) * autobump bio/picard/collectinsertsizemetrics ([#1190](https://www.github.com/snakemake/snakemake-wrappers/issues/1190)) ([543540a](https://www.github.com/snakemake/snakemake-wrappers/commit/543540aca4afc447f8e22eae8ec01a7a4f143839)) * autobump bio/picard/collectmultiplemetrics ([#1284](https://www.github.com/snakemake/snakemake-wrappers/issues/1284)) ([1e90009](https://www.github.com/snakemake/snakemake-wrappers/commit/1e900096bac6e3e85b4c795ffd0021116106e11a)) * autobump bio/picard/collecttargetedpcrmetrics ([#1203](https://www.github.com/snakemake/snakemake-wrappers/issues/1203)) ([7e55cfc](https://www.github.com/snakemake/snakemake-wrappers/commit/7e55cfc9f208bc95ea50fae9e5d52ccb6cd43998)) * autobump bio/picard/markduplicates ([#1233](https://www.github.com/snakemake/snakemake-wrappers/issues/1233)) ([1708e12](https://www.github.com/snakemake/snakemake-wrappers/commit/1708e127dbd80e5f96bc8224bbcbad7b14daa111)) * autobump bio/picard/mergesamfiles ([#1176](https://www.github.com/snakemake/snakemake-wrappers/issues/1176)) ([554f501](https://www.github.com/snakemake/snakemake-wrappers/commit/554f501f1c04cf90335b39e38d9919af1aa62d20)) * autobump bio/picard/samtofastq ([#1218](https://www.github.com/snakemake/snakemake-wrappers/issues/1218)) ([da9e010](https://www.github.com/snakemake/snakemake-wrappers/commit/da9e0101e9e9be9aa124dc454c43e5196746523e)) * autobump bio/picard/sortsam ([#1248](https://www.github.com/snakemake/snakemake-wrappers/issues/1248)) ([4cf9fdd](https://www.github.com/snakemake/snakemake-wrappers/commit/4cf9fdd2a49cc733f9917ff4c7f2257c770f9bd1)) * autobump bio/pretext/map ([#1227](https://www.github.com/snakemake/snakemake-wrappers/issues/1227)) ([fafa6ee](https://www.github.com/snakemake/snakemake-wrappers/commit/fafa6eeff201564f274ade75a3c1d31b21b575df)) * autobump bio/qualimap/bamqc ([#1251](https://www.github.com/snakemake/snakemake-wrappers/issues/1251)) ([4dc2495](https://www.github.com/snakemake/snakemake-wrappers/commit/4dc249559d4f59e9aec43c2b3757ca0a8fc61adb)) * autobump bio/rbt/csvreport ([#1243](https://www.github.com/snakemake/snakemake-wrappers/issues/1243)) ([25acb2f](https://www.github.com/snakemake/snakemake-wrappers/commit/25acb2f0c99dda2d36da474706dce1f18796022c)) * autobump bio/reference/ensembl-variation ([#1265](https://www.github.com/snakemake/snakemake-wrappers/issues/1265)) ([ede45c7](https://www.github.com/snakemake/snakemake-wrappers/commit/ede45c783b659b54758b4eee9570c8bd76d0a8da)) * autobump bio/samtools/faidx ([#1182](https://www.github.com/snakemake/snakemake-wrappers/issues/1182)) ([c223f0c](https://www.github.com/snakemake/snakemake-wrappers/commit/c223f0c429a41bdf3d10652c5a2286fc6034d4eb)) * autobump bio/samtools/faidx ([#1287](https://www.github.com/snakemake/snakemake-wrappers/issues/1287)) ([511d539](https://www.github.com/snakemake/snakemake-wrappers/commit/511d539680280ec2217e010809d158fa5fca67f9)) * autobump bio/samtools/fixmate ([#1264](https://www.github.com/snakemake/snakemake-wrappers/issues/1264)) ([f42a717](https://www.github.com/snakemake/snakemake-wrappers/commit/f42a717fa58bb3a1b9b442caa4d32b8778830568)) * autobump bio/samtools/flagstat ([#1184](https://www.github.com/snakemake/snakemake-wrappers/issues/1184)) ([4f5349c](https://www.github.com/snakemake/snakemake-wrappers/commit/4f5349cf64c1129ddb81b79cb29e9993f34af193)) * autobump bio/samtools/flagstat ([#1280](https://www.github.com/snakemake/snakemake-wrappers/issues/1280)) ([5fbbbbf](https://www.github.com/snakemake/snakemake-wrappers/commit/5fbbbbff43b98f2f4b9a5908704af9e39c52fd9b)) * autobump bio/samtools/idxstats ([#1193](https://www.github.com/snakemake/snakemake-wrappers/issues/1193)) ([f930f9e](https://www.github.com/snakemake/snakemake-wrappers/commit/f930f9e15ae64f07415fa6a0ba808b7e3ba12765)) * autobump bio/samtools/idxstats ([#1259](https://www.github.com/snakemake/snakemake-wrappers/issues/1259)) ([c6b3b40](https://www.github.com/snakemake/snakemake-wrappers/commit/c6b3b4088f4dea4645e1c95203cacaa400eacd4c)) * autobump bio/samtools/index ([#1214](https://www.github.com/snakemake/snakemake-wrappers/issues/1214)) ([a1ca2a1](https://www.github.com/snakemake/snakemake-wrappers/commit/a1ca2a110b8de164a14aaa9d9964e8681ba95d6b)) * autobump bio/samtools/stats ([#1222](https://www.github.com/snakemake/snakemake-wrappers/issues/1222)) ([0eb7652](https://www.github.com/snakemake/snakemake-wrappers/commit/0eb76529d289920319bd5368294a2c51fbc8834e)) * autobump bio/seqkit/rmdup ([#1162](https://www.github.com/snakemake/snakemake-wrappers/issues/1162)) ([88f74d4](https://www.github.com/snakemake/snakemake-wrappers/commit/88f74d4bc502b3299b40eb127f8eefa7e0554fcf)) * autobump bio/seqkit/stats ([#1213](https://www.github.com/snakemake/snakemake-wrappers/issues/1213)) ([523b69b](https://www.github.com/snakemake/snakemake-wrappers/commit/523b69b193b3e9d5b56964785626f4b07949f7b9)) * autobump bio/snpeff/annotate ([#1189](https://www.github.com/snakemake/snakemake-wrappers/issues/1189)) ([d873ee8](https://www.github.com/snakemake/snakemake-wrappers/commit/d873ee83265f6f34903a6e8d69f574422cb4f6da)) * autobump bio/snpsift/annotate ([#1204](https://www.github.com/snakemake/snakemake-wrappers/issues/1204)) ([8c069ff](https://www.github.com/snakemake/snakemake-wrappers/commit/8c069ff88aadba45c394f55a558a2b70cd3d4735)) * autobump bio/snpsift/genesets ([#1245](https://www.github.com/snakemake/snakemake-wrappers/issues/1245)) ([a2649a7](https://www.github.com/snakemake/snakemake-wrappers/commit/a2649a7e563758599af1834c2871ac19b8c0aa3f)) * autobump bio/snpsift/gwascat ([#1191](https://www.github.com/snakemake/snakemake-wrappers/issues/1191)) ([0c3c051](https://www.github.com/snakemake/snakemake-wrappers/commit/0c3c0519db9a75c78750a26b407bd9d0ebb88741)) * autobump bio/snpsift/gwascat ([#1211](https://www.github.com/snakemake/snakemake-wrappers/issues/1211)) ([53d82b9](https://www.github.com/snakemake/snakemake-wrappers/commit/53d82b92e41bf2eab92bd2eb6c92d10f94e4a09a)) * autobump bio/snpsift/varType ([#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([75bd430](https://www.github.com/snakemake/snakemake-wrappers/commit/75bd430edf46275f075a6b344642dece836532fe)) * autobump bio/snpsift/varType ([#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([eaee058](https://www.github.com/snakemake/snakemake-wrappers/commit/eaee0581606c601eda849d0cbfe255839ae91d46)) * autobump bio/strling/call ([#1216](https://www.github.com/snakemake/snakemake-wrappers/issues/1216)) ([fa539be](https://www.github.com/snakemake/snakemake-wrappers/commit/fa539be3e05ac73058c7dc450719363117014d28)) * autobump bio/strling/extract ([#1272](https://www.github.com/snakemake/snakemake-wrappers/issues/1272)) ([128d8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/128d8b9fcc04b980822a730e7f2c4626e30993b7)) * autobump bio/strling/index ([#1228](https://www.github.com/snakemake/snakemake-wrappers/issues/1228)) ([6cc0059](https://www.github.com/snakemake/snakemake-wrappers/commit/6cc00599fa9dd88d8559501f08fdd691a1b6668c)) * autobump bio/tximport ([#1278](https://www.github.com/snakemake/snakemake-wrappers/issues/1278)) ([f309cb9](https://www.github.com/snakemake/snakemake-wrappers/commit/f309cb98b6bc4fa762d3ba2043612c6e54c5d51f)) * autobump bio/umis/bamtag ([#1260](https://www.github.com/snakemake/snakemake-wrappers/issues/1260)) ([1334743](https://www.github.com/snakemake/snakemake-wrappers/commit/1334743834a811551f799d7e18038a5a546b9dbb)) * autobump bio/varscan/mpileup2indel ([#1186](https://www.github.com/snakemake/snakemake-wrappers/issues/1186)) ([72816c8](https://www.github.com/snakemake/snakemake-wrappers/commit/72816c80df421f1dad58f63559e1671c4b00a5af)) * autobump bio/varscan/mpileup2snp ([#1230](https://www.github.com/snakemake/snakemake-wrappers/issues/1230)) ([0266507](https://www.github.com/snakemake/snakemake-wrappers/commit/0266507d87ed97c4a67bef33cf39362fe32ec174)) * autobump bio/varscan/somatic ([#1178](https://www.github.com/snakemake/snakemake-wrappers/issues/1178)) ([1882608](https://www.github.com/snakemake/snakemake-wrappers/commit/18826087b21fb1f5279cfa8eea349fda58bcd50a)) * autobump bio/vembrane/filter ([#1229](https://www.github.com/snakemake/snakemake-wrappers/issues/1229)) ([1a30d43](https://www.github.com/snakemake/snakemake-wrappers/commit/1a30d43738fccdf0b9bfdc3477adbd4cbb3a8c38)) * autobump bio/vep/plugins ([#1200](https://www.github.com/snakemake/snakemake-wrappers/issues/1200)) ([a7909be](https://www.github.com/snakemake/snakemake-wrappers/commit/a7909be8b31e68c2f933d77b0befaf8bfe005d80)) * autobump bio/vg/construct ([#1226](https://www.github.com/snakemake/snakemake-wrappers/issues/1226)) ([4b2745f](https://www.github.com/snakemake/snakemake-wrappers/commit/4b2745f6ed8d987b355db06af29c62ffa0ad54f4)) * autobump bio/vg/ids ([#1285](https://www.github.com/snakemake/snakemake-wrappers/issues/1285)) ([8ffb3ea](https://www.github.com/snakemake/snakemake-wrappers/commit/8ffb3ea8ba79ce933ec7cf7445065dd4b26e15d1)) * autobump bio/vg/prune ([#1263](https://www.github.com/snakemake/snakemake-wrappers/issues/1263)) ([8a36dec](https://www.github.com/snakemake/snakemake-wrappers/commit/8a36deccdf7750b41625f152843d02e5ef0bd257)) * bump Salmon to v1.10.1 ([#1168](https://www.github.com/snakemake/snakemake-wrappers/issues/1168)) ([a718777](https://www.github.com/snakemake/snakemake-wrappers/commit/a718777f285f175c5f6c67170b6d6440d504184b)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic update of bio/samtools/index. Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
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Apr 27, 2023
🤖 I have created a release \*beep\* \*boop\* --- ## [1.26.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.25.0...v1.26.0) (2023-04-21) ### Features * added vsearch wrapper ([snakemake#1149](https://www.github.com/snakemake/snakemake-wrappers/issues/1149)) ([79342b7](https://www.github.com/snakemake/snakemake-wrappers/commit/79342b73df13b135e09dd61da5d185f84c20f6a1)) * also define overhang on params.extra ([snakemake#1173](https://www.github.com/snakemake/snakemake-wrappers/issues/1173)) ([7e63821](https://www.github.com/snakemake/snakemake-wrappers/commit/7e6382183ea02e086360dba5946a8725a3cdc98d)) * automate inference of index name ([snakemake#1169](https://www.github.com/snakemake/snakemake-wrappers/issues/1169)) ([0d2c92a](https://www.github.com/snakemake/snakemake-wrappers/commit/0d2c92a5be480dd60cdb1c422282b9812aa01e2f)) * Enhance deeptools compute matrix ([snakemake#1236](https://www.github.com/snakemake/snakemake-wrappers/issues/1236)) ([a44bef5](https://www.github.com/snakemake/snakemake-wrappers/commit/a44bef54526ea07da64305147aa8cfa9f74497a9)) * Lofreq indelqual wrapper ([snakemake#1166](https://www.github.com/snakemake/snakemake-wrappers/issues/1166)) ([e2215f2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2215f2e3cc18ed0ee165a440c3bb1752babab59)) * update datavzrd 2.18.1 ([snakemake#1171](https://www.github.com/snakemake/snakemake-wrappers/issues/1171)) ([00b9b1c](https://www.github.com/snakemake/snakemake-wrappers/commit/00b9b1cfac184303f70716749977e0343a09e8d0)) ### Bug Fixes * allow for arbitrary filename prefixes in the optitype wrapper ([snakemake#500](https://www.github.com/snakemake/snakemake-wrappers/issues/500)) ([0bf7175](https://www.github.com/snakemake/snakemake-wrappers/commit/0bf71755787c9c207f578d74007948ec7f89dfa8)) ### Performance Improvements * autobump bio/bazam ([snakemake#1187](https://www.github.com/snakemake/snakemake-wrappers/issues/1187)) ([df7d90e](https://www.github.com/snakemake/snakemake-wrappers/commit/df7d90e18cb33d3bd57c8720ab00971a26ee952a)) * autobump bio/bbtools/bbduk ([snakemake#1269](https://www.github.com/snakemake/snakemake-wrappers/issues/1269)) ([86c7a0a](https://www.github.com/snakemake/snakemake-wrappers/commit/86c7a0ac481bbb643a1d5460cc6668e134dc74e4)) * autobump bio/bcftools/call ([snakemake#1181](https://www.github.com/snakemake/snakemake-wrappers/issues/1181)) ([7fbc611](https://www.github.com/snakemake/snakemake-wrappers/commit/7fbc61182b3f9163c946306ec01ffd3575988970)) * autobump bio/bcftools/concat ([snakemake#1183](https://www.github.com/snakemake/snakemake-wrappers/issues/1183)) ([93d7103](https://www.github.com/snakemake/snakemake-wrappers/commit/93d71037234a1162036225065ac2ec329f1d1c34)) * autobump bio/bcftools/index ([snakemake#1279](https://www.github.com/snakemake/snakemake-wrappers/issues/1279)) ([3affe33](https://www.github.com/snakemake/snakemake-wrappers/commit/3affe33f6ed69becd7317b015e40ac2b4d7ac125)) * autobump bio/bcftools/merge ([snakemake#1266](https://www.github.com/snakemake/snakemake-wrappers/issues/1266)) ([b0a2c88](https://www.github.com/snakemake/snakemake-wrappers/commit/b0a2c88ac6239b55ac6638d35f80946c839220cd)) * autobump bio/bcftools/norm ([snakemake#1192](https://www.github.com/snakemake/snakemake-wrappers/issues/1192)) ([9e06c59](https://www.github.com/snakemake/snakemake-wrappers/commit/9e06c59da15866ea0f6c4793e053cb5169815fcd)) * autobump bio/bcftools/norm ([snakemake#1212](https://www.github.com/snakemake/snakemake-wrappers/issues/1212)) ([3667c6b](https://www.github.com/snakemake/snakemake-wrappers/commit/3667c6b1d3f824f4153212c18b9abbcca19a31e7)) * autobump bio/bcftools/sort ([snakemake#1257](https://www.github.com/snakemake/snakemake-wrappers/issues/1257)) ([dd478d2](https://www.github.com/snakemake/snakemake-wrappers/commit/dd478d216b6865a8828728a51354ad09ab286967)) * autobump bio/bcftools/stats ([snakemake#1197](https://www.github.com/snakemake/snakemake-wrappers/issues/1197)) ([c844da5](https://www.github.com/snakemake/snakemake-wrappers/commit/c844da5a713c588f3aaacd0d17494312c0901b43)) * autobump bio/bellerophon ([snakemake#1199](https://www.github.com/snakemake/snakemake-wrappers/issues/1199)) ([a2fe593](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe593f4e4f98dd3a135617129c817669f83b71)) * autobump bio/bellerophon ([snakemake#1286](https://www.github.com/snakemake/snakemake-wrappers/issues/1286)) ([2a21d19](https://www.github.com/snakemake/snakemake-wrappers/commit/2a21d1948ce87e13f781309e73ed42dadf297d15)) * autobump bio/bismark/bismark_genome_preparation ([snakemake#1276](https://www.github.com/snakemake/snakemake-wrappers/issues/1276)) ([5074972](https://www.github.com/snakemake/snakemake-wrappers/commit/507497256b9bf5b4d296ca105696e6bd4532b118)) * autobump bio/bismark/bismark_methylation_extractor ([snakemake#1220](https://www.github.com/snakemake/snakemake-wrappers/issues/1220)) ([05964de](https://www.github.com/snakemake/snakemake-wrappers/commit/05964de5e1e9c738654bd18c8f07cecf2626711b)) * autobump bio/bismark/bismark2bedGraph ([snakemake#1258](https://www.github.com/snakemake/snakemake-wrappers/issues/1258)) ([3eb60c2](https://www.github.com/snakemake/snakemake-wrappers/commit/3eb60c226ed74464e3b31b16c22cc5d99cf465e5)) * autobump bio/bismark/bismark2summary ([snakemake#1235](https://www.github.com/snakemake/snakemake-wrappers/issues/1235)) ([74a9de2](https://www.github.com/snakemake/snakemake-wrappers/commit/74a9de2c0896bc4ced38561bfa978bd99bd01e02)) * autobump bio/bowtie2/align ([snakemake#1206](https://www.github.com/snakemake/snakemake-wrappers/issues/1206)) ([d3544b0](https://www.github.com/snakemake/snakemake-wrappers/commit/d3544b024545620f4f17ca390d1466cebf5bca21)) * autobump bio/busco ([snakemake#1255](https://www.github.com/snakemake/snakemake-wrappers/issues/1255)) ([402aaaa](https://www.github.com/snakemake/snakemake-wrappers/commit/402aaaaf2cbbc47314db353905292a6e572ceb61)) * autobump bio/bwa-mem2/mem ([snakemake#1202](https://www.github.com/snakemake/snakemake-wrappers/issues/1202)) ([90e1d60](https://www.github.com/snakemake/snakemake-wrappers/commit/90e1d60c7f9f9c518814196f2e9d94b9a7fb6496)) * autobump bio/bwa-meme/index ([snakemake#1180](https://www.github.com/snakemake/snakemake-wrappers/issues/1180)) ([1f0378c](https://www.github.com/snakemake/snakemake-wrappers/commit/1f0378cdb6ed256362cf753fdba82d6f71677307)) * autobump bio/bwa-meme/mem ([snakemake#1163](https://www.github.com/snakemake/snakemake-wrappers/issues/1163)) ([5236667](https://www.github.com/snakemake/snakemake-wrappers/commit/52366674dbfaac0796041db97397e10b216bdf1a)) * autobump bio/bwa-meme/mem ([snakemake#1231](https://www.github.com/snakemake/snakemake-wrappers/issues/1231)) ([1ad2b8d](https://www.github.com/snakemake/snakemake-wrappers/commit/1ad2b8deb38664ebd2c92d67ce77fc095b6a4a18)) * autobump bio/bwa-memx/index ([snakemake#1207](https://www.github.com/snakemake/snakemake-wrappers/issues/1207)) ([59be498](https://www.github.com/snakemake/snakemake-wrappers/commit/59be498ccf3c3eb267c27db84ddbb4ad78157d29)) * autobump bio/bwa-memx/mem ([snakemake#1268](https://www.github.com/snakemake/snakemake-wrappers/issues/1268)) ([a2fe8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe8b975f3ac9e61cdcea172e506292b6a69a97)) * autobump bio/bwa/sampe ([snakemake#1225](https://www.github.com/snakemake/snakemake-wrappers/issues/1225)) ([d759781](https://www.github.com/snakemake/snakemake-wrappers/commit/d759781ec230084724d3dad2005aee196c135889)) * autobump bio/cutadapt/pe ([snakemake#1219](https://www.github.com/snakemake/snakemake-wrappers/issues/1219)) ([44f346e](https://www.github.com/snakemake/snakemake-wrappers/commit/44f346e2094a5d1c69d4bad14c98dfe3fb641b57)) * autobump bio/cutadapt/se ([snakemake#1253](https://www.github.com/snakemake/snakemake-wrappers/issues/1253)) ([95c8278](https://www.github.com/snakemake/snakemake-wrappers/commit/95c8278409f14990147d501a019cbe875ad4b28b)) * autobump bio/delly ([snakemake#1267](https://www.github.com/snakemake/snakemake-wrappers/issues/1267)) ([75a0d1a](https://www.github.com/snakemake/snakemake-wrappers/commit/75a0d1a0a2b03622f76f814258719c396691e5c7)) * autobump bio/diamond/blastp ([snakemake#1161](https://www.github.com/snakemake/snakemake-wrappers/issues/1161)) ([1f89877](https://www.github.com/snakemake/snakemake-wrappers/commit/1f898770af5b3c41135ede213508885bb214ab5f)) * autobump bio/diamond/blastx ([snakemake#1221](https://www.github.com/snakemake/snakemake-wrappers/issues/1221)) ([480fc20](https://www.github.com/snakemake/snakemake-wrappers/commit/480fc206378e088a1c7a46e71523a63bb7fe048a)) * autobump bio/diamond/makedb ([snakemake#1223](https://www.github.com/snakemake/snakemake-wrappers/issues/1223)) ([49d1484](https://www.github.com/snakemake/snakemake-wrappers/commit/49d14842fa6be1be1ed439b1107b3b4a952f6e45)) * autobump bio/fgbio/collectduplexseqmetrics ([snakemake#1201](https://www.github.com/snakemake/snakemake-wrappers/issues/1201)) ([04e4ec7](https://www.github.com/snakemake/snakemake-wrappers/commit/04e4ec73d53f15993ad55563c9477fb2885ff0f8)) * autobump bio/gatk/applybqsrspark ([snakemake#1194](https://www.github.com/snakemake/snakemake-wrappers/issues/1194)) ([65f53d8](https://www.github.com/snakemake/snakemake-wrappers/commit/65f53d89cee7a2b7903891fd33b40a33fd328c2f)) * autobump bio/gatk/applybqsrspark ([snakemake#1250](https://www.github.com/snakemake/snakemake-wrappers/issues/1250)) ([56efdd1](https://www.github.com/snakemake/snakemake-wrappers/commit/56efdd137d91a8bcbeebcfdb1591a5f7ccba2c32)) * autobump bio/gatk/applyvqsr ([snakemake#1274](https://www.github.com/snakemake/snakemake-wrappers/issues/1274)) ([8b8d890](https://www.github.com/snakemake/snakemake-wrappers/commit/8b8d89097eeccf042c848eab72ef2f3d964d2714)) * autobump bio/gatk/baserecalibrator ([snakemake#1249](https://www.github.com/snakemake/snakemake-wrappers/issues/1249)) ([788ed8f](https://www.github.com/snakemake/snakemake-wrappers/commit/788ed8f9d5c9fbdceece90cf2f53ca02dfa0bc14)) * autobump bio/gatk/baserecalibratorspark ([snakemake#1185](https://www.github.com/snakemake/snakemake-wrappers/issues/1185)) ([f5a5f47](https://www.github.com/snakemake/snakemake-wrappers/commit/f5a5f47382b2a7d9fce892d5564b8ef73dae9b0e)) * autobump bio/gatk/combinegvcfs ([snakemake#1261](https://www.github.com/snakemake/snakemake-wrappers/issues/1261)) ([bd3066a](https://www.github.com/snakemake/snakemake-wrappers/commit/bd3066a4b8444e00ed6fefa6d6aab8483d73f5fe)) * autobump bio/gatk/estimatelibrarycomplexity ([snakemake#1252](https://www.github.com/snakemake/snakemake-wrappers/issues/1252)) ([12f5440](https://www.github.com/snakemake/snakemake-wrappers/commit/12f54404f391cdd250471bde20442e131ce62e5b)) * autobump bio/gatk/filtermutectcalls ([snakemake#1155](https://www.github.com/snakemake/snakemake-wrappers/issues/1155)) ([0071533](https://www.github.com/snakemake/snakemake-wrappers/commit/00715334b70c8b0e2ae1e52b47351320fe8157af)) * autobump bio/gatk/filtermutectcalls ([snakemake#1195](https://www.github.com/snakemake/snakemake-wrappers/issues/1195)) ([7f05ddf](https://www.github.com/snakemake/snakemake-wrappers/commit/7f05ddf98bf36db83fb4846188f0b512cd08b68f)) * autobump bio/gatk/genomicsdbimport ([snakemake#1215](https://www.github.com/snakemake/snakemake-wrappers/issues/1215)) ([300dbe8](https://www.github.com/snakemake/snakemake-wrappers/commit/300dbe83c2ed9e573318a8b30fd22293541695ab)) * autobump bio/gatk/genotypegvcfs ([snakemake#1179](https://www.github.com/snakemake/snakemake-wrappers/issues/1179)) ([85758b7](https://www.github.com/snakemake/snakemake-wrappers/commit/85758b7f4d36fb40b9e9826200cba5cf5e95b29b)) * autobump bio/gatk/getpileupsummaries ([snakemake#1277](https://www.github.com/snakemake/snakemake-wrappers/issues/1277)) ([2239049](https://www.github.com/snakemake/snakemake-wrappers/commit/2239049edb6f3324cec7d43f9ecd50cdea30e6d4)) * autobump bio/gatk/haplotypecaller ([snakemake#1256](https://www.github.com/snakemake/snakemake-wrappers/issues/1256)) ([5caa178](https://www.github.com/snakemake/snakemake-wrappers/commit/5caa178fbcbc1dca8444f6a238c868d096b3785a)) * autobump bio/gatk/learnreadorientationmodel ([snakemake#1158](https://www.github.com/snakemake/snakemake-wrappers/issues/1158)) ([97cd747](https://www.github.com/snakemake/snakemake-wrappers/commit/97cd7470196fa28fa229361b81cc10466f87b495)) * autobump bio/gatk/leftalignandtrimvariants ([snakemake#1205](https://www.github.com/snakemake/snakemake-wrappers/issues/1205)) ([377f253](https://www.github.com/snakemake/snakemake-wrappers/commit/377f2533992ff68f563faed1a37059aeadf041bb)) * autobump bio/gatk/markduplicatesspark ([snakemake#1224](https://www.github.com/snakemake/snakemake-wrappers/issues/1224)) ([0893b4e](https://www.github.com/snakemake/snakemake-wrappers/commit/0893b4ec8d1cfecfc2a80c77e6170bbe2bbc981e)) * autobump bio/gatk/mutect ([snakemake#1262](https://www.github.com/snakemake/snakemake-wrappers/issues/1262)) ([a01e719](https://www.github.com/snakemake/snakemake-wrappers/commit/a01e7190abb6f08f8fbcd54d886d36b752171165)) * autobump bio/gatk/splitintervals ([snakemake#1188](https://www.github.com/snakemake/snakemake-wrappers/issues/1188)) ([2d610dd](https://www.github.com/snakemake/snakemake-wrappers/commit/2d610dd129d1b179ff550932416a0dcec6991cb9)) * autobump bio/gatk/variantannotator ([snakemake#1160](https://www.github.com/snakemake/snakemake-wrappers/issues/1160)) ([f7001e2](https://www.github.com/snakemake/snakemake-wrappers/commit/f7001e2c2a6ce9e3fef0fe700bb1a37c56d86c22)) * autobump bio/gatk/variantannotator ([snakemake#1282](https://www.github.com/snakemake/snakemake-wrappers/issues/1282)) ([a158262](https://www.github.com/snakemake/snakemake-wrappers/commit/a1582620d1c628988075455fb9e9d1b6f76ea09e)) * autobump bio/gatk3/baserecalibrator ([snakemake#1273](https://www.github.com/snakemake/snakemake-wrappers/issues/1273)) ([63e7ae2](https://www.github.com/snakemake/snakemake-wrappers/commit/63e7ae2258533c1bb7676d24e6eb163dcafb1801)) * autobump bio/gatk3/printreads ([snakemake#1174](https://www.github.com/snakemake/snakemake-wrappers/issues/1174)) ([22f8e69](https://www.github.com/snakemake/snakemake-wrappers/commit/22f8e696259744d09af4d07053bbe1124f5ca0e5)) * autobump bio/gatk3/printreads ([snakemake#1217](https://www.github.com/snakemake/snakemake-wrappers/issues/1217)) ([5d05b88](https://www.github.com/snakemake/snakemake-wrappers/commit/5d05b8828266a4a33dbeb80900faf6f2df971c7d)) * autobump bio/gdc-api/bam-slicing ([snakemake#1159](https://www.github.com/snakemake/snakemake-wrappers/issues/1159)) ([96a1a42](https://www.github.com/snakemake/snakemake-wrappers/commit/96a1a42b672bdf9fca9a8e8ef5d140cc02d93753)) * autobump bio/hisat2/align ([snakemake#1281](https://www.github.com/snakemake/snakemake-wrappers/issues/1281)) ([a9edff7](https://www.github.com/snakemake/snakemake-wrappers/commit/a9edff748a9eead75e1e43ae5601e7a8c814d221)) * autobump bio/homer/makeTagDirectory ([snakemake#1246](https://www.github.com/snakemake/snakemake-wrappers/issues/1246)) ([44847e2](https://www.github.com/snakemake/snakemake-wrappers/commit/44847e2ef5f63c51f03a2370a0d6768dc49fed46)) * autobump bio/last/lastal ([snakemake#1165](https://www.github.com/snakemake/snakemake-wrappers/issues/1165)) ([ca0d13f](https://www.github.com/snakemake/snakemake-wrappers/commit/ca0d13fad8396327826d41d394861809305c87d5)) * autobump bio/last/lastdb ([snakemake#1254](https://www.github.com/snakemake/snakemake-wrappers/issues/1254)) ([2f11b1e](https://www.github.com/snakemake/snakemake-wrappers/commit/2f11b1e181be6435687bf28ac00c4183ea2868d9)) * autobump bio/lofreq/call ([snakemake#1156](https://www.github.com/snakemake/snakemake-wrappers/issues/1156)) ([c750bbf](https://www.github.com/snakemake/snakemake-wrappers/commit/c750bbf2b0fd45abd3d0ba8b926a6cf404b38c0d)) * autobump bio/lofreq/call ([snakemake#1275](https://www.github.com/snakemake/snakemake-wrappers/issues/1275)) ([e2c4dc2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2c4dc2e8d79f65af02860f5c762bc2a6a3372ab)) * autobump bio/lofreq/indelqual ([snakemake#1283](https://www.github.com/snakemake/snakemake-wrappers/issues/1283)) ([9730460](https://www.github.com/snakemake/snakemake-wrappers/commit/9730460bd457d8b0a8163d49b592d446fe412ae6)) * autobump bio/mashmap ([snakemake#1244](https://www.github.com/snakemake/snakemake-wrappers/issues/1244)) ([fad0092](https://www.github.com/snakemake/snakemake-wrappers/commit/fad0092b61dba723b7d653894950121553f5b126)) * autobump bio/microphaser/filter ([snakemake#1164](https://www.github.com/snakemake/snakemake-wrappers/issues/1164)) ([8932d38](https://www.github.com/snakemake/snakemake-wrappers/commit/8932d3882426094d0de56fc32c8e9b81a72c37e5)) * autobump bio/minimap2/aligner ([snakemake#1177](https://www.github.com/snakemake/snakemake-wrappers/issues/1177)) ([07f4e02](https://www.github.com/snakemake/snakemake-wrappers/commit/07f4e0238bd7c9207aa6c56744dcfe9c5090f7b5)) * autobump bio/open-cravat/module ([snakemake#1232](https://www.github.com/snakemake/snakemake-wrappers/issues/1232)) ([be62998](https://www.github.com/snakemake/snakemake-wrappers/commit/be629987465b94a9f616c3754af8349d33dd875a)) * autobump bio/paladin/align ([snakemake#1234](https://www.github.com/snakemake/snakemake-wrappers/issues/1234)) ([df3c213](https://www.github.com/snakemake/snakemake-wrappers/commit/df3c213a390bd4a9fdebb809ecf31debef74b8f7)) * autobump bio/picard/collectalignmentsummarymetrics ([snakemake#1175](https://www.github.com/snakemake/snakemake-wrappers/issues/1175)) ([856224a](https://www.github.com/snakemake/snakemake-wrappers/commit/856224a4db42aa3ea9937c39745a1c7dfab7ff20)) * autobump bio/picard/collectgcbiasmetrics ([snakemake#1247](https://www.github.com/snakemake/snakemake-wrappers/issues/1247)) ([202ab81](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab81a08990a4d9c2b6915130430928c3414e0)) * autobump bio/picard/collecthsmetrics ([snakemake#1198](https://www.github.com/snakemake/snakemake-wrappers/issues/1198)) ([874fc3f](https://www.github.com/snakemake/snakemake-wrappers/commit/874fc3f6ab40df13dcc3be0a8f68510c2da555f2)) * autobump bio/picard/collectinsertsizemetrics ([snakemake#1190](https://www.github.com/snakemake/snakemake-wrappers/issues/1190)) ([543540a](https://www.github.com/snakemake/snakemake-wrappers/commit/543540aca4afc447f8e22eae8ec01a7a4f143839)) * autobump bio/picard/collectmultiplemetrics ([snakemake#1284](https://www.github.com/snakemake/snakemake-wrappers/issues/1284)) ([1e90009](https://www.github.com/snakemake/snakemake-wrappers/commit/1e900096bac6e3e85b4c795ffd0021116106e11a)) * autobump bio/picard/collecttargetedpcrmetrics ([snakemake#1203](https://www.github.com/snakemake/snakemake-wrappers/issues/1203)) ([7e55cfc](https://www.github.com/snakemake/snakemake-wrappers/commit/7e55cfc9f208bc95ea50fae9e5d52ccb6cd43998)) * autobump bio/picard/markduplicates ([snakemake#1233](https://www.github.com/snakemake/snakemake-wrappers/issues/1233)) ([1708e12](https://www.github.com/snakemake/snakemake-wrappers/commit/1708e127dbd80e5f96bc8224bbcbad7b14daa111)) * autobump bio/picard/mergesamfiles ([snakemake#1176](https://www.github.com/snakemake/snakemake-wrappers/issues/1176)) ([554f501](https://www.github.com/snakemake/snakemake-wrappers/commit/554f501f1c04cf90335b39e38d9919af1aa62d20)) * autobump bio/picard/samtofastq ([snakemake#1218](https://www.github.com/snakemake/snakemake-wrappers/issues/1218)) ([da9e010](https://www.github.com/snakemake/snakemake-wrappers/commit/da9e0101e9e9be9aa124dc454c43e5196746523e)) * autobump bio/picard/sortsam ([snakemake#1248](https://www.github.com/snakemake/snakemake-wrappers/issues/1248)) ([4cf9fdd](https://www.github.com/snakemake/snakemake-wrappers/commit/4cf9fdd2a49cc733f9917ff4c7f2257c770f9bd1)) * autobump bio/pretext/map ([snakemake#1227](https://www.github.com/snakemake/snakemake-wrappers/issues/1227)) ([fafa6ee](https://www.github.com/snakemake/snakemake-wrappers/commit/fafa6eeff201564f274ade75a3c1d31b21b575df)) * autobump bio/qualimap/bamqc ([snakemake#1251](https://www.github.com/snakemake/snakemake-wrappers/issues/1251)) ([4dc2495](https://www.github.com/snakemake/snakemake-wrappers/commit/4dc249559d4f59e9aec43c2b3757ca0a8fc61adb)) * autobump bio/rbt/csvreport ([snakemake#1243](https://www.github.com/snakemake/snakemake-wrappers/issues/1243)) ([25acb2f](https://www.github.com/snakemake/snakemake-wrappers/commit/25acb2f0c99dda2d36da474706dce1f18796022c)) * autobump bio/reference/ensembl-variation ([snakemake#1265](https://www.github.com/snakemake/snakemake-wrappers/issues/1265)) ([ede45c7](https://www.github.com/snakemake/snakemake-wrappers/commit/ede45c783b659b54758b4eee9570c8bd76d0a8da)) * autobump bio/samtools/faidx ([snakemake#1182](https://www.github.com/snakemake/snakemake-wrappers/issues/1182)) ([c223f0c](https://www.github.com/snakemake/snakemake-wrappers/commit/c223f0c429a41bdf3d10652c5a2286fc6034d4eb)) * autobump bio/samtools/faidx ([snakemake#1287](https://www.github.com/snakemake/snakemake-wrappers/issues/1287)) ([511d539](https://www.github.com/snakemake/snakemake-wrappers/commit/511d539680280ec2217e010809d158fa5fca67f9)) * autobump bio/samtools/fixmate ([snakemake#1264](https://www.github.com/snakemake/snakemake-wrappers/issues/1264)) ([f42a717](https://www.github.com/snakemake/snakemake-wrappers/commit/f42a717fa58bb3a1b9b442caa4d32b8778830568)) * autobump bio/samtools/flagstat ([snakemake#1184](https://www.github.com/snakemake/snakemake-wrappers/issues/1184)) ([4f5349c](https://www.github.com/snakemake/snakemake-wrappers/commit/4f5349cf64c1129ddb81b79cb29e9993f34af193)) * autobump bio/samtools/flagstat ([snakemake#1280](https://www.github.com/snakemake/snakemake-wrappers/issues/1280)) ([5fbbbbf](https://www.github.com/snakemake/snakemake-wrappers/commit/5fbbbbff43b98f2f4b9a5908704af9e39c52fd9b)) * autobump bio/samtools/idxstats ([snakemake#1193](https://www.github.com/snakemake/snakemake-wrappers/issues/1193)) ([f930f9e](https://www.github.com/snakemake/snakemake-wrappers/commit/f930f9e15ae64f07415fa6a0ba808b7e3ba12765)) * autobump bio/samtools/idxstats ([snakemake#1259](https://www.github.com/snakemake/snakemake-wrappers/issues/1259)) ([c6b3b40](https://www.github.com/snakemake/snakemake-wrappers/commit/c6b3b4088f4dea4645e1c95203cacaa400eacd4c)) * autobump bio/samtools/index ([snakemake#1214](https://www.github.com/snakemake/snakemake-wrappers/issues/1214)) ([a1ca2a1](https://www.github.com/snakemake/snakemake-wrappers/commit/a1ca2a110b8de164a14aaa9d9964e8681ba95d6b)) * autobump bio/samtools/stats ([snakemake#1222](https://www.github.com/snakemake/snakemake-wrappers/issues/1222)) ([0eb7652](https://www.github.com/snakemake/snakemake-wrappers/commit/0eb76529d289920319bd5368294a2c51fbc8834e)) * autobump bio/seqkit/rmdup ([snakemake#1162](https://www.github.com/snakemake/snakemake-wrappers/issues/1162)) ([88f74d4](https://www.github.com/snakemake/snakemake-wrappers/commit/88f74d4bc502b3299b40eb127f8eefa7e0554fcf)) * autobump bio/seqkit/stats ([snakemake#1213](https://www.github.com/snakemake/snakemake-wrappers/issues/1213)) ([523b69b](https://www.github.com/snakemake/snakemake-wrappers/commit/523b69b193b3e9d5b56964785626f4b07949f7b9)) * autobump bio/snpeff/annotate ([snakemake#1189](https://www.github.com/snakemake/snakemake-wrappers/issues/1189)) ([d873ee8](https://www.github.com/snakemake/snakemake-wrappers/commit/d873ee83265f6f34903a6e8d69f574422cb4f6da)) * autobump bio/snpsift/annotate ([snakemake#1204](https://www.github.com/snakemake/snakemake-wrappers/issues/1204)) ([8c069ff](https://www.github.com/snakemake/snakemake-wrappers/commit/8c069ff88aadba45c394f55a558a2b70cd3d4735)) * autobump bio/snpsift/genesets ([snakemake#1245](https://www.github.com/snakemake/snakemake-wrappers/issues/1245)) ([a2649a7](https://www.github.com/snakemake/snakemake-wrappers/commit/a2649a7e563758599af1834c2871ac19b8c0aa3f)) * autobump bio/snpsift/gwascat ([snakemake#1191](https://www.github.com/snakemake/snakemake-wrappers/issues/1191)) ([0c3c051](https://www.github.com/snakemake/snakemake-wrappers/commit/0c3c0519db9a75c78750a26b407bd9d0ebb88741)) * autobump bio/snpsift/gwascat ([snakemake#1211](https://www.github.com/snakemake/snakemake-wrappers/issues/1211)) ([53d82b9](https://www.github.com/snakemake/snakemake-wrappers/commit/53d82b92e41bf2eab92bd2eb6c92d10f94e4a09a)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([75bd430](https://www.github.com/snakemake/snakemake-wrappers/commit/75bd430edf46275f075a6b344642dece836532fe)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([eaee058](https://www.github.com/snakemake/snakemake-wrappers/commit/eaee0581606c601eda849d0cbfe255839ae91d46)) * autobump bio/strling/call ([snakemake#1216](https://www.github.com/snakemake/snakemake-wrappers/issues/1216)) ([fa539be](https://www.github.com/snakemake/snakemake-wrappers/commit/fa539be3e05ac73058c7dc450719363117014d28)) * autobump bio/strling/extract ([snakemake#1272](https://www.github.com/snakemake/snakemake-wrappers/issues/1272)) ([128d8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/128d8b9fcc04b980822a730e7f2c4626e30993b7)) * autobump bio/strling/index ([snakemake#1228](https://www.github.com/snakemake/snakemake-wrappers/issues/1228)) ([6cc0059](https://www.github.com/snakemake/snakemake-wrappers/commit/6cc00599fa9dd88d8559501f08fdd691a1b6668c)) * autobump bio/tximport ([snakemake#1278](https://www.github.com/snakemake/snakemake-wrappers/issues/1278)) ([f309cb9](https://www.github.com/snakemake/snakemake-wrappers/commit/f309cb98b6bc4fa762d3ba2043612c6e54c5d51f)) * autobump bio/umis/bamtag ([snakemake#1260](https://www.github.com/snakemake/snakemake-wrappers/issues/1260)) ([1334743](https://www.github.com/snakemake/snakemake-wrappers/commit/1334743834a811551f799d7e18038a5a546b9dbb)) * autobump bio/varscan/mpileup2indel ([snakemake#1186](https://www.github.com/snakemake/snakemake-wrappers/issues/1186)) ([72816c8](https://www.github.com/snakemake/snakemake-wrappers/commit/72816c80df421f1dad58f63559e1671c4b00a5af)) * autobump bio/varscan/mpileup2snp ([snakemake#1230](https://www.github.com/snakemake/snakemake-wrappers/issues/1230)) ([0266507](https://www.github.com/snakemake/snakemake-wrappers/commit/0266507d87ed97c4a67bef33cf39362fe32ec174)) * autobump bio/varscan/somatic ([snakemake#1178](https://www.github.com/snakemake/snakemake-wrappers/issues/1178)) ([1882608](https://www.github.com/snakemake/snakemake-wrappers/commit/18826087b21fb1f5279cfa8eea349fda58bcd50a)) * autobump bio/vembrane/filter ([snakemake#1229](https://www.github.com/snakemake/snakemake-wrappers/issues/1229)) ([1a30d43](https://www.github.com/snakemake/snakemake-wrappers/commit/1a30d43738fccdf0b9bfdc3477adbd4cbb3a8c38)) * autobump bio/vep/plugins ([snakemake#1200](https://www.github.com/snakemake/snakemake-wrappers/issues/1200)) ([a7909be](https://www.github.com/snakemake/snakemake-wrappers/commit/a7909be8b31e68c2f933d77b0befaf8bfe005d80)) * autobump bio/vg/construct ([snakemake#1226](https://www.github.com/snakemake/snakemake-wrappers/issues/1226)) ([4b2745f](https://www.github.com/snakemake/snakemake-wrappers/commit/4b2745f6ed8d987b355db06af29c62ffa0ad54f4)) * autobump bio/vg/ids ([snakemake#1285](https://www.github.com/snakemake/snakemake-wrappers/issues/1285)) ([8ffb3ea](https://www.github.com/snakemake/snakemake-wrappers/commit/8ffb3ea8ba79ce933ec7cf7445065dd4b26e15d1)) * autobump bio/vg/prune ([snakemake#1263](https://www.github.com/snakemake/snakemake-wrappers/issues/1263)) ([8a36dec](https://www.github.com/snakemake/snakemake-wrappers/commit/8a36deccdf7750b41625f152843d02e5ef0bd257)) * bump Salmon to v1.10.1 ([snakemake#1168](https://www.github.com/snakemake/snakemake-wrappers/issues/1168)) ([a718777](https://www.github.com/snakemake/snakemake-wrappers/commit/a718777f285f175c5f6c67170b6d6440d504184b)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
tdayris
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May 11, 2023
🤖 I have created a release \*beep\* \*boop\* --- ## [1.26.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.25.0...v1.26.0) (2023-04-21) ### Features * added vsearch wrapper ([snakemake#1149](https://www.github.com/snakemake/snakemake-wrappers/issues/1149)) ([79342b7](https://www.github.com/snakemake/snakemake-wrappers/commit/79342b73df13b135e09dd61da5d185f84c20f6a1)) * also define overhang on params.extra ([snakemake#1173](https://www.github.com/snakemake/snakemake-wrappers/issues/1173)) ([7e63821](https://www.github.com/snakemake/snakemake-wrappers/commit/7e6382183ea02e086360dba5946a8725a3cdc98d)) * automate inference of index name ([snakemake#1169](https://www.github.com/snakemake/snakemake-wrappers/issues/1169)) ([0d2c92a](https://www.github.com/snakemake/snakemake-wrappers/commit/0d2c92a5be480dd60cdb1c422282b9812aa01e2f)) * Enhance deeptools compute matrix ([snakemake#1236](https://www.github.com/snakemake/snakemake-wrappers/issues/1236)) ([a44bef5](https://www.github.com/snakemake/snakemake-wrappers/commit/a44bef54526ea07da64305147aa8cfa9f74497a9)) * Lofreq indelqual wrapper ([snakemake#1166](https://www.github.com/snakemake/snakemake-wrappers/issues/1166)) ([e2215f2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2215f2e3cc18ed0ee165a440c3bb1752babab59)) * update datavzrd 2.18.1 ([snakemake#1171](https://www.github.com/snakemake/snakemake-wrappers/issues/1171)) ([00b9b1c](https://www.github.com/snakemake/snakemake-wrappers/commit/00b9b1cfac184303f70716749977e0343a09e8d0)) ### Bug Fixes * allow for arbitrary filename prefixes in the optitype wrapper ([snakemake#500](https://www.github.com/snakemake/snakemake-wrappers/issues/500)) ([0bf7175](https://www.github.com/snakemake/snakemake-wrappers/commit/0bf71755787c9c207f578d74007948ec7f89dfa8)) ### Performance Improvements * autobump bio/bazam ([snakemake#1187](https://www.github.com/snakemake/snakemake-wrappers/issues/1187)) ([df7d90e](https://www.github.com/snakemake/snakemake-wrappers/commit/df7d90e18cb33d3bd57c8720ab00971a26ee952a)) * autobump bio/bbtools/bbduk ([snakemake#1269](https://www.github.com/snakemake/snakemake-wrappers/issues/1269)) ([86c7a0a](https://www.github.com/snakemake/snakemake-wrappers/commit/86c7a0ac481bbb643a1d5460cc6668e134dc74e4)) * autobump bio/bcftools/call ([snakemake#1181](https://www.github.com/snakemake/snakemake-wrappers/issues/1181)) ([7fbc611](https://www.github.com/snakemake/snakemake-wrappers/commit/7fbc61182b3f9163c946306ec01ffd3575988970)) * autobump bio/bcftools/concat ([snakemake#1183](https://www.github.com/snakemake/snakemake-wrappers/issues/1183)) ([93d7103](https://www.github.com/snakemake/snakemake-wrappers/commit/93d71037234a1162036225065ac2ec329f1d1c34)) * autobump bio/bcftools/index ([snakemake#1279](https://www.github.com/snakemake/snakemake-wrappers/issues/1279)) ([3affe33](https://www.github.com/snakemake/snakemake-wrappers/commit/3affe33f6ed69becd7317b015e40ac2b4d7ac125)) * autobump bio/bcftools/merge ([snakemake#1266](https://www.github.com/snakemake/snakemake-wrappers/issues/1266)) ([b0a2c88](https://www.github.com/snakemake/snakemake-wrappers/commit/b0a2c88ac6239b55ac6638d35f80946c839220cd)) * autobump bio/bcftools/norm ([snakemake#1192](https://www.github.com/snakemake/snakemake-wrappers/issues/1192)) ([9e06c59](https://www.github.com/snakemake/snakemake-wrappers/commit/9e06c59da15866ea0f6c4793e053cb5169815fcd)) * autobump bio/bcftools/norm ([snakemake#1212](https://www.github.com/snakemake/snakemake-wrappers/issues/1212)) ([3667c6b](https://www.github.com/snakemake/snakemake-wrappers/commit/3667c6b1d3f824f4153212c18b9abbcca19a31e7)) * autobump bio/bcftools/sort ([snakemake#1257](https://www.github.com/snakemake/snakemake-wrappers/issues/1257)) ([dd478d2](https://www.github.com/snakemake/snakemake-wrappers/commit/dd478d216b6865a8828728a51354ad09ab286967)) * autobump bio/bcftools/stats ([snakemake#1197](https://www.github.com/snakemake/snakemake-wrappers/issues/1197)) ([c844da5](https://www.github.com/snakemake/snakemake-wrappers/commit/c844da5a713c588f3aaacd0d17494312c0901b43)) * autobump bio/bellerophon ([snakemake#1199](https://www.github.com/snakemake/snakemake-wrappers/issues/1199)) ([a2fe593](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe593f4e4f98dd3a135617129c817669f83b71)) * autobump bio/bellerophon ([snakemake#1286](https://www.github.com/snakemake/snakemake-wrappers/issues/1286)) ([2a21d19](https://www.github.com/snakemake/snakemake-wrappers/commit/2a21d1948ce87e13f781309e73ed42dadf297d15)) * autobump bio/bismark/bismark_genome_preparation ([snakemake#1276](https://www.github.com/snakemake/snakemake-wrappers/issues/1276)) ([5074972](https://www.github.com/snakemake/snakemake-wrappers/commit/507497256b9bf5b4d296ca105696e6bd4532b118)) * autobump bio/bismark/bismark_methylation_extractor ([snakemake#1220](https://www.github.com/snakemake/snakemake-wrappers/issues/1220)) ([05964de](https://www.github.com/snakemake/snakemake-wrappers/commit/05964de5e1e9c738654bd18c8f07cecf2626711b)) * autobump bio/bismark/bismark2bedGraph ([snakemake#1258](https://www.github.com/snakemake/snakemake-wrappers/issues/1258)) ([3eb60c2](https://www.github.com/snakemake/snakemake-wrappers/commit/3eb60c226ed74464e3b31b16c22cc5d99cf465e5)) * autobump bio/bismark/bismark2summary ([snakemake#1235](https://www.github.com/snakemake/snakemake-wrappers/issues/1235)) ([74a9de2](https://www.github.com/snakemake/snakemake-wrappers/commit/74a9de2c0896bc4ced38561bfa978bd99bd01e02)) * autobump bio/bowtie2/align ([snakemake#1206](https://www.github.com/snakemake/snakemake-wrappers/issues/1206)) ([d3544b0](https://www.github.com/snakemake/snakemake-wrappers/commit/d3544b024545620f4f17ca390d1466cebf5bca21)) * autobump bio/busco ([snakemake#1255](https://www.github.com/snakemake/snakemake-wrappers/issues/1255)) ([402aaaa](https://www.github.com/snakemake/snakemake-wrappers/commit/402aaaaf2cbbc47314db353905292a6e572ceb61)) * autobump bio/bwa-mem2/mem ([snakemake#1202](https://www.github.com/snakemake/snakemake-wrappers/issues/1202)) ([90e1d60](https://www.github.com/snakemake/snakemake-wrappers/commit/90e1d60c7f9f9c518814196f2e9d94b9a7fb6496)) * autobump bio/bwa-meme/index ([snakemake#1180](https://www.github.com/snakemake/snakemake-wrappers/issues/1180)) ([1f0378c](https://www.github.com/snakemake/snakemake-wrappers/commit/1f0378cdb6ed256362cf753fdba82d6f71677307)) * autobump bio/bwa-meme/mem ([snakemake#1163](https://www.github.com/snakemake/snakemake-wrappers/issues/1163)) ([5236667](https://www.github.com/snakemake/snakemake-wrappers/commit/52366674dbfaac0796041db97397e10b216bdf1a)) * autobump bio/bwa-meme/mem ([snakemake#1231](https://www.github.com/snakemake/snakemake-wrappers/issues/1231)) ([1ad2b8d](https://www.github.com/snakemake/snakemake-wrappers/commit/1ad2b8deb38664ebd2c92d67ce77fc095b6a4a18)) * autobump bio/bwa-memx/index ([snakemake#1207](https://www.github.com/snakemake/snakemake-wrappers/issues/1207)) ([59be498](https://www.github.com/snakemake/snakemake-wrappers/commit/59be498ccf3c3eb267c27db84ddbb4ad78157d29)) * autobump bio/bwa-memx/mem ([snakemake#1268](https://www.github.com/snakemake/snakemake-wrappers/issues/1268)) ([a2fe8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe8b975f3ac9e61cdcea172e506292b6a69a97)) * autobump bio/bwa/sampe ([snakemake#1225](https://www.github.com/snakemake/snakemake-wrappers/issues/1225)) ([d759781](https://www.github.com/snakemake/snakemake-wrappers/commit/d759781ec230084724d3dad2005aee196c135889)) * autobump bio/cutadapt/pe ([snakemake#1219](https://www.github.com/snakemake/snakemake-wrappers/issues/1219)) ([44f346e](https://www.github.com/snakemake/snakemake-wrappers/commit/44f346e2094a5d1c69d4bad14c98dfe3fb641b57)) * autobump bio/cutadapt/se ([snakemake#1253](https://www.github.com/snakemake/snakemake-wrappers/issues/1253)) ([95c8278](https://www.github.com/snakemake/snakemake-wrappers/commit/95c8278409f14990147d501a019cbe875ad4b28b)) * autobump bio/delly ([snakemake#1267](https://www.github.com/snakemake/snakemake-wrappers/issues/1267)) ([75a0d1a](https://www.github.com/snakemake/snakemake-wrappers/commit/75a0d1a0a2b03622f76f814258719c396691e5c7)) * autobump bio/diamond/blastp ([snakemake#1161](https://www.github.com/snakemake/snakemake-wrappers/issues/1161)) ([1f89877](https://www.github.com/snakemake/snakemake-wrappers/commit/1f898770af5b3c41135ede213508885bb214ab5f)) * autobump bio/diamond/blastx ([snakemake#1221](https://www.github.com/snakemake/snakemake-wrappers/issues/1221)) ([480fc20](https://www.github.com/snakemake/snakemake-wrappers/commit/480fc206378e088a1c7a46e71523a63bb7fe048a)) * autobump bio/diamond/makedb ([snakemake#1223](https://www.github.com/snakemake/snakemake-wrappers/issues/1223)) ([49d1484](https://www.github.com/snakemake/snakemake-wrappers/commit/49d14842fa6be1be1ed439b1107b3b4a952f6e45)) * autobump bio/fgbio/collectduplexseqmetrics ([snakemake#1201](https://www.github.com/snakemake/snakemake-wrappers/issues/1201)) ([04e4ec7](https://www.github.com/snakemake/snakemake-wrappers/commit/04e4ec73d53f15993ad55563c9477fb2885ff0f8)) * autobump bio/gatk/applybqsrspark ([snakemake#1194](https://www.github.com/snakemake/snakemake-wrappers/issues/1194)) ([65f53d8](https://www.github.com/snakemake/snakemake-wrappers/commit/65f53d89cee7a2b7903891fd33b40a33fd328c2f)) * autobump bio/gatk/applybqsrspark ([snakemake#1250](https://www.github.com/snakemake/snakemake-wrappers/issues/1250)) ([56efdd1](https://www.github.com/snakemake/snakemake-wrappers/commit/56efdd137d91a8bcbeebcfdb1591a5f7ccba2c32)) * autobump bio/gatk/applyvqsr ([snakemake#1274](https://www.github.com/snakemake/snakemake-wrappers/issues/1274)) ([8b8d890](https://www.github.com/snakemake/snakemake-wrappers/commit/8b8d89097eeccf042c848eab72ef2f3d964d2714)) * autobump bio/gatk/baserecalibrator ([snakemake#1249](https://www.github.com/snakemake/snakemake-wrappers/issues/1249)) ([788ed8f](https://www.github.com/snakemake/snakemake-wrappers/commit/788ed8f9d5c9fbdceece90cf2f53ca02dfa0bc14)) * autobump bio/gatk/baserecalibratorspark ([snakemake#1185](https://www.github.com/snakemake/snakemake-wrappers/issues/1185)) ([f5a5f47](https://www.github.com/snakemake/snakemake-wrappers/commit/f5a5f47382b2a7d9fce892d5564b8ef73dae9b0e)) * autobump bio/gatk/combinegvcfs ([snakemake#1261](https://www.github.com/snakemake/snakemake-wrappers/issues/1261)) ([bd3066a](https://www.github.com/snakemake/snakemake-wrappers/commit/bd3066a4b8444e00ed6fefa6d6aab8483d73f5fe)) * autobump bio/gatk/estimatelibrarycomplexity ([snakemake#1252](https://www.github.com/snakemake/snakemake-wrappers/issues/1252)) ([12f5440](https://www.github.com/snakemake/snakemake-wrappers/commit/12f54404f391cdd250471bde20442e131ce62e5b)) * autobump bio/gatk/filtermutectcalls ([snakemake#1155](https://www.github.com/snakemake/snakemake-wrappers/issues/1155)) ([0071533](https://www.github.com/snakemake/snakemake-wrappers/commit/00715334b70c8b0e2ae1e52b47351320fe8157af)) * autobump bio/gatk/filtermutectcalls ([snakemake#1195](https://www.github.com/snakemake/snakemake-wrappers/issues/1195)) ([7f05ddf](https://www.github.com/snakemake/snakemake-wrappers/commit/7f05ddf98bf36db83fb4846188f0b512cd08b68f)) * autobump bio/gatk/genomicsdbimport ([snakemake#1215](https://www.github.com/snakemake/snakemake-wrappers/issues/1215)) ([300dbe8](https://www.github.com/snakemake/snakemake-wrappers/commit/300dbe83c2ed9e573318a8b30fd22293541695ab)) * autobump bio/gatk/genotypegvcfs ([snakemake#1179](https://www.github.com/snakemake/snakemake-wrappers/issues/1179)) ([85758b7](https://www.github.com/snakemake/snakemake-wrappers/commit/85758b7f4d36fb40b9e9826200cba5cf5e95b29b)) * autobump bio/gatk/getpileupsummaries ([snakemake#1277](https://www.github.com/snakemake/snakemake-wrappers/issues/1277)) ([2239049](https://www.github.com/snakemake/snakemake-wrappers/commit/2239049edb6f3324cec7d43f9ecd50cdea30e6d4)) * autobump bio/gatk/haplotypecaller ([snakemake#1256](https://www.github.com/snakemake/snakemake-wrappers/issues/1256)) ([5caa178](https://www.github.com/snakemake/snakemake-wrappers/commit/5caa178fbcbc1dca8444f6a238c868d096b3785a)) * autobump bio/gatk/learnreadorientationmodel ([snakemake#1158](https://www.github.com/snakemake/snakemake-wrappers/issues/1158)) ([97cd747](https://www.github.com/snakemake/snakemake-wrappers/commit/97cd7470196fa28fa229361b81cc10466f87b495)) * autobump bio/gatk/leftalignandtrimvariants ([snakemake#1205](https://www.github.com/snakemake/snakemake-wrappers/issues/1205)) ([377f253](https://www.github.com/snakemake/snakemake-wrappers/commit/377f2533992ff68f563faed1a37059aeadf041bb)) * autobump bio/gatk/markduplicatesspark ([snakemake#1224](https://www.github.com/snakemake/snakemake-wrappers/issues/1224)) ([0893b4e](https://www.github.com/snakemake/snakemake-wrappers/commit/0893b4ec8d1cfecfc2a80c77e6170bbe2bbc981e)) * autobump bio/gatk/mutect ([snakemake#1262](https://www.github.com/snakemake/snakemake-wrappers/issues/1262)) ([a01e719](https://www.github.com/snakemake/snakemake-wrappers/commit/a01e7190abb6f08f8fbcd54d886d36b752171165)) * autobump bio/gatk/splitintervals ([snakemake#1188](https://www.github.com/snakemake/snakemake-wrappers/issues/1188)) ([2d610dd](https://www.github.com/snakemake/snakemake-wrappers/commit/2d610dd129d1b179ff550932416a0dcec6991cb9)) * autobump bio/gatk/variantannotator ([snakemake#1160](https://www.github.com/snakemake/snakemake-wrappers/issues/1160)) ([f7001e2](https://www.github.com/snakemake/snakemake-wrappers/commit/f7001e2c2a6ce9e3fef0fe700bb1a37c56d86c22)) * autobump bio/gatk/variantannotator ([snakemake#1282](https://www.github.com/snakemake/snakemake-wrappers/issues/1282)) ([a158262](https://www.github.com/snakemake/snakemake-wrappers/commit/a1582620d1c628988075455fb9e9d1b6f76ea09e)) * autobump bio/gatk3/baserecalibrator ([snakemake#1273](https://www.github.com/snakemake/snakemake-wrappers/issues/1273)) ([63e7ae2](https://www.github.com/snakemake/snakemake-wrappers/commit/63e7ae2258533c1bb7676d24e6eb163dcafb1801)) * autobump bio/gatk3/printreads ([snakemake#1174](https://www.github.com/snakemake/snakemake-wrappers/issues/1174)) ([22f8e69](https://www.github.com/snakemake/snakemake-wrappers/commit/22f8e696259744d09af4d07053bbe1124f5ca0e5)) * autobump bio/gatk3/printreads ([snakemake#1217](https://www.github.com/snakemake/snakemake-wrappers/issues/1217)) ([5d05b88](https://www.github.com/snakemake/snakemake-wrappers/commit/5d05b8828266a4a33dbeb80900faf6f2df971c7d)) * autobump bio/gdc-api/bam-slicing ([snakemake#1159](https://www.github.com/snakemake/snakemake-wrappers/issues/1159)) ([96a1a42](https://www.github.com/snakemake/snakemake-wrappers/commit/96a1a42b672bdf9fca9a8e8ef5d140cc02d93753)) * autobump bio/hisat2/align ([snakemake#1281](https://www.github.com/snakemake/snakemake-wrappers/issues/1281)) ([a9edff7](https://www.github.com/snakemake/snakemake-wrappers/commit/a9edff748a9eead75e1e43ae5601e7a8c814d221)) * autobump bio/homer/makeTagDirectory ([snakemake#1246](https://www.github.com/snakemake/snakemake-wrappers/issues/1246)) ([44847e2](https://www.github.com/snakemake/snakemake-wrappers/commit/44847e2ef5f63c51f03a2370a0d6768dc49fed46)) * autobump bio/last/lastal ([snakemake#1165](https://www.github.com/snakemake/snakemake-wrappers/issues/1165)) ([ca0d13f](https://www.github.com/snakemake/snakemake-wrappers/commit/ca0d13fad8396327826d41d394861809305c87d5)) * autobump bio/last/lastdb ([snakemake#1254](https://www.github.com/snakemake/snakemake-wrappers/issues/1254)) ([2f11b1e](https://www.github.com/snakemake/snakemake-wrappers/commit/2f11b1e181be6435687bf28ac00c4183ea2868d9)) * autobump bio/lofreq/call ([snakemake#1156](https://www.github.com/snakemake/snakemake-wrappers/issues/1156)) ([c750bbf](https://www.github.com/snakemake/snakemake-wrappers/commit/c750bbf2b0fd45abd3d0ba8b926a6cf404b38c0d)) * autobump bio/lofreq/call ([snakemake#1275](https://www.github.com/snakemake/snakemake-wrappers/issues/1275)) ([e2c4dc2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2c4dc2e8d79f65af02860f5c762bc2a6a3372ab)) * autobump bio/lofreq/indelqual ([snakemake#1283](https://www.github.com/snakemake/snakemake-wrappers/issues/1283)) ([9730460](https://www.github.com/snakemake/snakemake-wrappers/commit/9730460bd457d8b0a8163d49b592d446fe412ae6)) * autobump bio/mashmap ([snakemake#1244](https://www.github.com/snakemake/snakemake-wrappers/issues/1244)) ([fad0092](https://www.github.com/snakemake/snakemake-wrappers/commit/fad0092b61dba723b7d653894950121553f5b126)) * autobump bio/microphaser/filter ([snakemake#1164](https://www.github.com/snakemake/snakemake-wrappers/issues/1164)) ([8932d38](https://www.github.com/snakemake/snakemake-wrappers/commit/8932d3882426094d0de56fc32c8e9b81a72c37e5)) * autobump bio/minimap2/aligner ([snakemake#1177](https://www.github.com/snakemake/snakemake-wrappers/issues/1177)) ([07f4e02](https://www.github.com/snakemake/snakemake-wrappers/commit/07f4e0238bd7c9207aa6c56744dcfe9c5090f7b5)) * autobump bio/open-cravat/module ([snakemake#1232](https://www.github.com/snakemake/snakemake-wrappers/issues/1232)) ([be62998](https://www.github.com/snakemake/snakemake-wrappers/commit/be629987465b94a9f616c3754af8349d33dd875a)) * autobump bio/paladin/align ([snakemake#1234](https://www.github.com/snakemake/snakemake-wrappers/issues/1234)) ([df3c213](https://www.github.com/snakemake/snakemake-wrappers/commit/df3c213a390bd4a9fdebb809ecf31debef74b8f7)) * autobump bio/picard/collectalignmentsummarymetrics ([snakemake#1175](https://www.github.com/snakemake/snakemake-wrappers/issues/1175)) ([856224a](https://www.github.com/snakemake/snakemake-wrappers/commit/856224a4db42aa3ea9937c39745a1c7dfab7ff20)) * autobump bio/picard/collectgcbiasmetrics ([snakemake#1247](https://www.github.com/snakemake/snakemake-wrappers/issues/1247)) ([202ab81](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab81a08990a4d9c2b6915130430928c3414e0)) * autobump bio/picard/collecthsmetrics ([snakemake#1198](https://www.github.com/snakemake/snakemake-wrappers/issues/1198)) ([874fc3f](https://www.github.com/snakemake/snakemake-wrappers/commit/874fc3f6ab40df13dcc3be0a8f68510c2da555f2)) * autobump bio/picard/collectinsertsizemetrics ([snakemake#1190](https://www.github.com/snakemake/snakemake-wrappers/issues/1190)) ([543540a](https://www.github.com/snakemake/snakemake-wrappers/commit/543540aca4afc447f8e22eae8ec01a7a4f143839)) * autobump bio/picard/collectmultiplemetrics ([snakemake#1284](https://www.github.com/snakemake/snakemake-wrappers/issues/1284)) ([1e90009](https://www.github.com/snakemake/snakemake-wrappers/commit/1e900096bac6e3e85b4c795ffd0021116106e11a)) * autobump bio/picard/collecttargetedpcrmetrics ([snakemake#1203](https://www.github.com/snakemake/snakemake-wrappers/issues/1203)) ([7e55cfc](https://www.github.com/snakemake/snakemake-wrappers/commit/7e55cfc9f208bc95ea50fae9e5d52ccb6cd43998)) * autobump bio/picard/markduplicates ([snakemake#1233](https://www.github.com/snakemake/snakemake-wrappers/issues/1233)) ([1708e12](https://www.github.com/snakemake/snakemake-wrappers/commit/1708e127dbd80e5f96bc8224bbcbad7b14daa111)) * autobump bio/picard/mergesamfiles ([snakemake#1176](https://www.github.com/snakemake/snakemake-wrappers/issues/1176)) ([554f501](https://www.github.com/snakemake/snakemake-wrappers/commit/554f501f1c04cf90335b39e38d9919af1aa62d20)) * autobump bio/picard/samtofastq ([snakemake#1218](https://www.github.com/snakemake/snakemake-wrappers/issues/1218)) ([da9e010](https://www.github.com/snakemake/snakemake-wrappers/commit/da9e0101e9e9be9aa124dc454c43e5196746523e)) * autobump bio/picard/sortsam ([snakemake#1248](https://www.github.com/snakemake/snakemake-wrappers/issues/1248)) ([4cf9fdd](https://www.github.com/snakemake/snakemake-wrappers/commit/4cf9fdd2a49cc733f9917ff4c7f2257c770f9bd1)) * autobump bio/pretext/map ([snakemake#1227](https://www.github.com/snakemake/snakemake-wrappers/issues/1227)) ([fafa6ee](https://www.github.com/snakemake/snakemake-wrappers/commit/fafa6eeff201564f274ade75a3c1d31b21b575df)) * autobump bio/qualimap/bamqc ([snakemake#1251](https://www.github.com/snakemake/snakemake-wrappers/issues/1251)) ([4dc2495](https://www.github.com/snakemake/snakemake-wrappers/commit/4dc249559d4f59e9aec43c2b3757ca0a8fc61adb)) * autobump bio/rbt/csvreport ([snakemake#1243](https://www.github.com/snakemake/snakemake-wrappers/issues/1243)) ([25acb2f](https://www.github.com/snakemake/snakemake-wrappers/commit/25acb2f0c99dda2d36da474706dce1f18796022c)) * autobump bio/reference/ensembl-variation ([snakemake#1265](https://www.github.com/snakemake/snakemake-wrappers/issues/1265)) ([ede45c7](https://www.github.com/snakemake/snakemake-wrappers/commit/ede45c783b659b54758b4eee9570c8bd76d0a8da)) * autobump bio/samtools/faidx ([snakemake#1182](https://www.github.com/snakemake/snakemake-wrappers/issues/1182)) ([c223f0c](https://www.github.com/snakemake/snakemake-wrappers/commit/c223f0c429a41bdf3d10652c5a2286fc6034d4eb)) * autobump bio/samtools/faidx ([snakemake#1287](https://www.github.com/snakemake/snakemake-wrappers/issues/1287)) ([511d539](https://www.github.com/snakemake/snakemake-wrappers/commit/511d539680280ec2217e010809d158fa5fca67f9)) * autobump bio/samtools/fixmate ([snakemake#1264](https://www.github.com/snakemake/snakemake-wrappers/issues/1264)) ([f42a717](https://www.github.com/snakemake/snakemake-wrappers/commit/f42a717fa58bb3a1b9b442caa4d32b8778830568)) * autobump bio/samtools/flagstat ([snakemake#1184](https://www.github.com/snakemake/snakemake-wrappers/issues/1184)) ([4f5349c](https://www.github.com/snakemake/snakemake-wrappers/commit/4f5349cf64c1129ddb81b79cb29e9993f34af193)) * autobump bio/samtools/flagstat ([snakemake#1280](https://www.github.com/snakemake/snakemake-wrappers/issues/1280)) ([5fbbbbf](https://www.github.com/snakemake/snakemake-wrappers/commit/5fbbbbff43b98f2f4b9a5908704af9e39c52fd9b)) * autobump bio/samtools/idxstats ([snakemake#1193](https://www.github.com/snakemake/snakemake-wrappers/issues/1193)) ([f930f9e](https://www.github.com/snakemake/snakemake-wrappers/commit/f930f9e15ae64f07415fa6a0ba808b7e3ba12765)) * autobump bio/samtools/idxstats ([snakemake#1259](https://www.github.com/snakemake/snakemake-wrappers/issues/1259)) ([c6b3b40](https://www.github.com/snakemake/snakemake-wrappers/commit/c6b3b4088f4dea4645e1c95203cacaa400eacd4c)) * autobump bio/samtools/index ([snakemake#1214](https://www.github.com/snakemake/snakemake-wrappers/issues/1214)) ([a1ca2a1](https://www.github.com/snakemake/snakemake-wrappers/commit/a1ca2a110b8de164a14aaa9d9964e8681ba95d6b)) * autobump bio/samtools/stats ([snakemake#1222](https://www.github.com/snakemake/snakemake-wrappers/issues/1222)) ([0eb7652](https://www.github.com/snakemake/snakemake-wrappers/commit/0eb76529d289920319bd5368294a2c51fbc8834e)) * autobump bio/seqkit/rmdup ([snakemake#1162](https://www.github.com/snakemake/snakemake-wrappers/issues/1162)) ([88f74d4](https://www.github.com/snakemake/snakemake-wrappers/commit/88f74d4bc502b3299b40eb127f8eefa7e0554fcf)) * autobump bio/seqkit/stats ([snakemake#1213](https://www.github.com/snakemake/snakemake-wrappers/issues/1213)) ([523b69b](https://www.github.com/snakemake/snakemake-wrappers/commit/523b69b193b3e9d5b56964785626f4b07949f7b9)) * autobump bio/snpeff/annotate ([snakemake#1189](https://www.github.com/snakemake/snakemake-wrappers/issues/1189)) ([d873ee8](https://www.github.com/snakemake/snakemake-wrappers/commit/d873ee83265f6f34903a6e8d69f574422cb4f6da)) * autobump bio/snpsift/annotate ([snakemake#1204](https://www.github.com/snakemake/snakemake-wrappers/issues/1204)) ([8c069ff](https://www.github.com/snakemake/snakemake-wrappers/commit/8c069ff88aadba45c394f55a558a2b70cd3d4735)) * autobump bio/snpsift/genesets ([snakemake#1245](https://www.github.com/snakemake/snakemake-wrappers/issues/1245)) ([a2649a7](https://www.github.com/snakemake/snakemake-wrappers/commit/a2649a7e563758599af1834c2871ac19b8c0aa3f)) * autobump bio/snpsift/gwascat ([snakemake#1191](https://www.github.com/snakemake/snakemake-wrappers/issues/1191)) ([0c3c051](https://www.github.com/snakemake/snakemake-wrappers/commit/0c3c0519db9a75c78750a26b407bd9d0ebb88741)) * autobump bio/snpsift/gwascat ([snakemake#1211](https://www.github.com/snakemake/snakemake-wrappers/issues/1211)) ([53d82b9](https://www.github.com/snakemake/snakemake-wrappers/commit/53d82b92e41bf2eab92bd2eb6c92d10f94e4a09a)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([75bd430](https://www.github.com/snakemake/snakemake-wrappers/commit/75bd430edf46275f075a6b344642dece836532fe)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([eaee058](https://www.github.com/snakemake/snakemake-wrappers/commit/eaee0581606c601eda849d0cbfe255839ae91d46)) * autobump bio/strling/call ([snakemake#1216](https://www.github.com/snakemake/snakemake-wrappers/issues/1216)) ([fa539be](https://www.github.com/snakemake/snakemake-wrappers/commit/fa539be3e05ac73058c7dc450719363117014d28)) * autobump bio/strling/extract ([snakemake#1272](https://www.github.com/snakemake/snakemake-wrappers/issues/1272)) ([128d8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/128d8b9fcc04b980822a730e7f2c4626e30993b7)) * autobump bio/strling/index ([snakemake#1228](https://www.github.com/snakemake/snakemake-wrappers/issues/1228)) ([6cc0059](https://www.github.com/snakemake/snakemake-wrappers/commit/6cc00599fa9dd88d8559501f08fdd691a1b6668c)) * autobump bio/tximport ([snakemake#1278](https://www.github.com/snakemake/snakemake-wrappers/issues/1278)) ([f309cb9](https://www.github.com/snakemake/snakemake-wrappers/commit/f309cb98b6bc4fa762d3ba2043612c6e54c5d51f)) * autobump bio/umis/bamtag ([snakemake#1260](https://www.github.com/snakemake/snakemake-wrappers/issues/1260)) ([1334743](https://www.github.com/snakemake/snakemake-wrappers/commit/1334743834a811551f799d7e18038a5a546b9dbb)) * autobump bio/varscan/mpileup2indel ([snakemake#1186](https://www.github.com/snakemake/snakemake-wrappers/issues/1186)) ([72816c8](https://www.github.com/snakemake/snakemake-wrappers/commit/72816c80df421f1dad58f63559e1671c4b00a5af)) * autobump bio/varscan/mpileup2snp ([snakemake#1230](https://www.github.com/snakemake/snakemake-wrappers/issues/1230)) ([0266507](https://www.github.com/snakemake/snakemake-wrappers/commit/0266507d87ed97c4a67bef33cf39362fe32ec174)) * autobump bio/varscan/somatic ([snakemake#1178](https://www.github.com/snakemake/snakemake-wrappers/issues/1178)) ([1882608](https://www.github.com/snakemake/snakemake-wrappers/commit/18826087b21fb1f5279cfa8eea349fda58bcd50a)) * autobump bio/vembrane/filter ([snakemake#1229](https://www.github.com/snakemake/snakemake-wrappers/issues/1229)) ([1a30d43](https://www.github.com/snakemake/snakemake-wrappers/commit/1a30d43738fccdf0b9bfdc3477adbd4cbb3a8c38)) * autobump bio/vep/plugins ([snakemake#1200](https://www.github.com/snakemake/snakemake-wrappers/issues/1200)) ([a7909be](https://www.github.com/snakemake/snakemake-wrappers/commit/a7909be8b31e68c2f933d77b0befaf8bfe005d80)) * autobump bio/vg/construct ([snakemake#1226](https://www.github.com/snakemake/snakemake-wrappers/issues/1226)) ([4b2745f](https://www.github.com/snakemake/snakemake-wrappers/commit/4b2745f6ed8d987b355db06af29c62ffa0ad54f4)) * autobump bio/vg/ids ([snakemake#1285](https://www.github.com/snakemake/snakemake-wrappers/issues/1285)) ([8ffb3ea](https://www.github.com/snakemake/snakemake-wrappers/commit/8ffb3ea8ba79ce933ec7cf7445065dd4b26e15d1)) * autobump bio/vg/prune ([snakemake#1263](https://www.github.com/snakemake/snakemake-wrappers/issues/1263)) ([8a36dec](https://www.github.com/snakemake/snakemake-wrappers/commit/8a36deccdf7750b41625f152843d02e5ef0bd257)) * bump Salmon to v1.10.1 ([snakemake#1168](https://www.github.com/snakemake/snakemake-wrappers/issues/1168)) ([a718777](https://www.github.com/snakemake/snakemake-wrappers/commit/a718777f285f175c5f6c67170b6d6440d504184b)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
tdayris
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Jul 5, 2023
🤖 I have created a release \*beep\* \*boop\* --- ## [1.26.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.25.0...v1.26.0) (2023-04-21) ### Features * added vsearch wrapper ([snakemake#1149](https://www.github.com/snakemake/snakemake-wrappers/issues/1149)) ([79342b7](https://www.github.com/snakemake/snakemake-wrappers/commit/79342b73df13b135e09dd61da5d185f84c20f6a1)) * also define overhang on params.extra ([snakemake#1173](https://www.github.com/snakemake/snakemake-wrappers/issues/1173)) ([7e63821](https://www.github.com/snakemake/snakemake-wrappers/commit/7e6382183ea02e086360dba5946a8725a3cdc98d)) * automate inference of index name ([snakemake#1169](https://www.github.com/snakemake/snakemake-wrappers/issues/1169)) ([0d2c92a](https://www.github.com/snakemake/snakemake-wrappers/commit/0d2c92a5be480dd60cdb1c422282b9812aa01e2f)) * Enhance deeptools compute matrix ([snakemake#1236](https://www.github.com/snakemake/snakemake-wrappers/issues/1236)) ([a44bef5](https://www.github.com/snakemake/snakemake-wrappers/commit/a44bef54526ea07da64305147aa8cfa9f74497a9)) * Lofreq indelqual wrapper ([snakemake#1166](https://www.github.com/snakemake/snakemake-wrappers/issues/1166)) ([e2215f2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2215f2e3cc18ed0ee165a440c3bb1752babab59)) * update datavzrd 2.18.1 ([snakemake#1171](https://www.github.com/snakemake/snakemake-wrappers/issues/1171)) ([00b9b1c](https://www.github.com/snakemake/snakemake-wrappers/commit/00b9b1cfac184303f70716749977e0343a09e8d0)) ### Bug Fixes * allow for arbitrary filename prefixes in the optitype wrapper ([snakemake#500](https://www.github.com/snakemake/snakemake-wrappers/issues/500)) ([0bf7175](https://www.github.com/snakemake/snakemake-wrappers/commit/0bf71755787c9c207f578d74007948ec7f89dfa8)) ### Performance Improvements * autobump bio/bazam ([snakemake#1187](https://www.github.com/snakemake/snakemake-wrappers/issues/1187)) ([df7d90e](https://www.github.com/snakemake/snakemake-wrappers/commit/df7d90e18cb33d3bd57c8720ab00971a26ee952a)) * autobump bio/bbtools/bbduk ([snakemake#1269](https://www.github.com/snakemake/snakemake-wrappers/issues/1269)) ([86c7a0a](https://www.github.com/snakemake/snakemake-wrappers/commit/86c7a0ac481bbb643a1d5460cc6668e134dc74e4)) * autobump bio/bcftools/call ([snakemake#1181](https://www.github.com/snakemake/snakemake-wrappers/issues/1181)) ([7fbc611](https://www.github.com/snakemake/snakemake-wrappers/commit/7fbc61182b3f9163c946306ec01ffd3575988970)) * autobump bio/bcftools/concat ([snakemake#1183](https://www.github.com/snakemake/snakemake-wrappers/issues/1183)) ([93d7103](https://www.github.com/snakemake/snakemake-wrappers/commit/93d71037234a1162036225065ac2ec329f1d1c34)) * autobump bio/bcftools/index ([snakemake#1279](https://www.github.com/snakemake/snakemake-wrappers/issues/1279)) ([3affe33](https://www.github.com/snakemake/snakemake-wrappers/commit/3affe33f6ed69becd7317b015e40ac2b4d7ac125)) * autobump bio/bcftools/merge ([snakemake#1266](https://www.github.com/snakemake/snakemake-wrappers/issues/1266)) ([b0a2c88](https://www.github.com/snakemake/snakemake-wrappers/commit/b0a2c88ac6239b55ac6638d35f80946c839220cd)) * autobump bio/bcftools/norm ([snakemake#1192](https://www.github.com/snakemake/snakemake-wrappers/issues/1192)) ([9e06c59](https://www.github.com/snakemake/snakemake-wrappers/commit/9e06c59da15866ea0f6c4793e053cb5169815fcd)) * autobump bio/bcftools/norm ([snakemake#1212](https://www.github.com/snakemake/snakemake-wrappers/issues/1212)) ([3667c6b](https://www.github.com/snakemake/snakemake-wrappers/commit/3667c6b1d3f824f4153212c18b9abbcca19a31e7)) * autobump bio/bcftools/sort ([snakemake#1257](https://www.github.com/snakemake/snakemake-wrappers/issues/1257)) ([dd478d2](https://www.github.com/snakemake/snakemake-wrappers/commit/dd478d216b6865a8828728a51354ad09ab286967)) * autobump bio/bcftools/stats ([snakemake#1197](https://www.github.com/snakemake/snakemake-wrappers/issues/1197)) ([c844da5](https://www.github.com/snakemake/snakemake-wrappers/commit/c844da5a713c588f3aaacd0d17494312c0901b43)) * autobump bio/bellerophon ([snakemake#1199](https://www.github.com/snakemake/snakemake-wrappers/issues/1199)) ([a2fe593](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe593f4e4f98dd3a135617129c817669f83b71)) * autobump bio/bellerophon ([snakemake#1286](https://www.github.com/snakemake/snakemake-wrappers/issues/1286)) ([2a21d19](https://www.github.com/snakemake/snakemake-wrappers/commit/2a21d1948ce87e13f781309e73ed42dadf297d15)) * autobump bio/bismark/bismark_genome_preparation ([snakemake#1276](https://www.github.com/snakemake/snakemake-wrappers/issues/1276)) ([5074972](https://www.github.com/snakemake/snakemake-wrappers/commit/507497256b9bf5b4d296ca105696e6bd4532b118)) * autobump bio/bismark/bismark_methylation_extractor ([snakemake#1220](https://www.github.com/snakemake/snakemake-wrappers/issues/1220)) ([05964de](https://www.github.com/snakemake/snakemake-wrappers/commit/05964de5e1e9c738654bd18c8f07cecf2626711b)) * autobump bio/bismark/bismark2bedGraph ([snakemake#1258](https://www.github.com/snakemake/snakemake-wrappers/issues/1258)) ([3eb60c2](https://www.github.com/snakemake/snakemake-wrappers/commit/3eb60c226ed74464e3b31b16c22cc5d99cf465e5)) * autobump bio/bismark/bismark2summary ([snakemake#1235](https://www.github.com/snakemake/snakemake-wrappers/issues/1235)) ([74a9de2](https://www.github.com/snakemake/snakemake-wrappers/commit/74a9de2c0896bc4ced38561bfa978bd99bd01e02)) * autobump bio/bowtie2/align ([snakemake#1206](https://www.github.com/snakemake/snakemake-wrappers/issues/1206)) ([d3544b0](https://www.github.com/snakemake/snakemake-wrappers/commit/d3544b024545620f4f17ca390d1466cebf5bca21)) * autobump bio/busco ([snakemake#1255](https://www.github.com/snakemake/snakemake-wrappers/issues/1255)) ([402aaaa](https://www.github.com/snakemake/snakemake-wrappers/commit/402aaaaf2cbbc47314db353905292a6e572ceb61)) * autobump bio/bwa-mem2/mem ([snakemake#1202](https://www.github.com/snakemake/snakemake-wrappers/issues/1202)) ([90e1d60](https://www.github.com/snakemake/snakemake-wrappers/commit/90e1d60c7f9f9c518814196f2e9d94b9a7fb6496)) * autobump bio/bwa-meme/index ([snakemake#1180](https://www.github.com/snakemake/snakemake-wrappers/issues/1180)) ([1f0378c](https://www.github.com/snakemake/snakemake-wrappers/commit/1f0378cdb6ed256362cf753fdba82d6f71677307)) * autobump bio/bwa-meme/mem ([snakemake#1163](https://www.github.com/snakemake/snakemake-wrappers/issues/1163)) ([5236667](https://www.github.com/snakemake/snakemake-wrappers/commit/52366674dbfaac0796041db97397e10b216bdf1a)) * autobump bio/bwa-meme/mem ([snakemake#1231](https://www.github.com/snakemake/snakemake-wrappers/issues/1231)) ([1ad2b8d](https://www.github.com/snakemake/snakemake-wrappers/commit/1ad2b8deb38664ebd2c92d67ce77fc095b6a4a18)) * autobump bio/bwa-memx/index ([snakemake#1207](https://www.github.com/snakemake/snakemake-wrappers/issues/1207)) ([59be498](https://www.github.com/snakemake/snakemake-wrappers/commit/59be498ccf3c3eb267c27db84ddbb4ad78157d29)) * autobump bio/bwa-memx/mem ([snakemake#1268](https://www.github.com/snakemake/snakemake-wrappers/issues/1268)) ([a2fe8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/a2fe8b975f3ac9e61cdcea172e506292b6a69a97)) * autobump bio/bwa/sampe ([snakemake#1225](https://www.github.com/snakemake/snakemake-wrappers/issues/1225)) ([d759781](https://www.github.com/snakemake/snakemake-wrappers/commit/d759781ec230084724d3dad2005aee196c135889)) * autobump bio/cutadapt/pe ([snakemake#1219](https://www.github.com/snakemake/snakemake-wrappers/issues/1219)) ([44f346e](https://www.github.com/snakemake/snakemake-wrappers/commit/44f346e2094a5d1c69d4bad14c98dfe3fb641b57)) * autobump bio/cutadapt/se ([snakemake#1253](https://www.github.com/snakemake/snakemake-wrappers/issues/1253)) ([95c8278](https://www.github.com/snakemake/snakemake-wrappers/commit/95c8278409f14990147d501a019cbe875ad4b28b)) * autobump bio/delly ([snakemake#1267](https://www.github.com/snakemake/snakemake-wrappers/issues/1267)) ([75a0d1a](https://www.github.com/snakemake/snakemake-wrappers/commit/75a0d1a0a2b03622f76f814258719c396691e5c7)) * autobump bio/diamond/blastp ([snakemake#1161](https://www.github.com/snakemake/snakemake-wrappers/issues/1161)) ([1f89877](https://www.github.com/snakemake/snakemake-wrappers/commit/1f898770af5b3c41135ede213508885bb214ab5f)) * autobump bio/diamond/blastx ([snakemake#1221](https://www.github.com/snakemake/snakemake-wrappers/issues/1221)) ([480fc20](https://www.github.com/snakemake/snakemake-wrappers/commit/480fc206378e088a1c7a46e71523a63bb7fe048a)) * autobump bio/diamond/makedb ([snakemake#1223](https://www.github.com/snakemake/snakemake-wrappers/issues/1223)) ([49d1484](https://www.github.com/snakemake/snakemake-wrappers/commit/49d14842fa6be1be1ed439b1107b3b4a952f6e45)) * autobump bio/fgbio/collectduplexseqmetrics ([snakemake#1201](https://www.github.com/snakemake/snakemake-wrappers/issues/1201)) ([04e4ec7](https://www.github.com/snakemake/snakemake-wrappers/commit/04e4ec73d53f15993ad55563c9477fb2885ff0f8)) * autobump bio/gatk/applybqsrspark ([snakemake#1194](https://www.github.com/snakemake/snakemake-wrappers/issues/1194)) ([65f53d8](https://www.github.com/snakemake/snakemake-wrappers/commit/65f53d89cee7a2b7903891fd33b40a33fd328c2f)) * autobump bio/gatk/applybqsrspark ([snakemake#1250](https://www.github.com/snakemake/snakemake-wrappers/issues/1250)) ([56efdd1](https://www.github.com/snakemake/snakemake-wrappers/commit/56efdd137d91a8bcbeebcfdb1591a5f7ccba2c32)) * autobump bio/gatk/applyvqsr ([snakemake#1274](https://www.github.com/snakemake/snakemake-wrappers/issues/1274)) ([8b8d890](https://www.github.com/snakemake/snakemake-wrappers/commit/8b8d89097eeccf042c848eab72ef2f3d964d2714)) * autobump bio/gatk/baserecalibrator ([snakemake#1249](https://www.github.com/snakemake/snakemake-wrappers/issues/1249)) ([788ed8f](https://www.github.com/snakemake/snakemake-wrappers/commit/788ed8f9d5c9fbdceece90cf2f53ca02dfa0bc14)) * autobump bio/gatk/baserecalibratorspark ([snakemake#1185](https://www.github.com/snakemake/snakemake-wrappers/issues/1185)) ([f5a5f47](https://www.github.com/snakemake/snakemake-wrappers/commit/f5a5f47382b2a7d9fce892d5564b8ef73dae9b0e)) * autobump bio/gatk/combinegvcfs ([snakemake#1261](https://www.github.com/snakemake/snakemake-wrappers/issues/1261)) ([bd3066a](https://www.github.com/snakemake/snakemake-wrappers/commit/bd3066a4b8444e00ed6fefa6d6aab8483d73f5fe)) * autobump bio/gatk/estimatelibrarycomplexity ([snakemake#1252](https://www.github.com/snakemake/snakemake-wrappers/issues/1252)) ([12f5440](https://www.github.com/snakemake/snakemake-wrappers/commit/12f54404f391cdd250471bde20442e131ce62e5b)) * autobump bio/gatk/filtermutectcalls ([snakemake#1155](https://www.github.com/snakemake/snakemake-wrappers/issues/1155)) ([0071533](https://www.github.com/snakemake/snakemake-wrappers/commit/00715334b70c8b0e2ae1e52b47351320fe8157af)) * autobump bio/gatk/filtermutectcalls ([snakemake#1195](https://www.github.com/snakemake/snakemake-wrappers/issues/1195)) ([7f05ddf](https://www.github.com/snakemake/snakemake-wrappers/commit/7f05ddf98bf36db83fb4846188f0b512cd08b68f)) * autobump bio/gatk/genomicsdbimport ([snakemake#1215](https://www.github.com/snakemake/snakemake-wrappers/issues/1215)) ([300dbe8](https://www.github.com/snakemake/snakemake-wrappers/commit/300dbe83c2ed9e573318a8b30fd22293541695ab)) * autobump bio/gatk/genotypegvcfs ([snakemake#1179](https://www.github.com/snakemake/snakemake-wrappers/issues/1179)) ([85758b7](https://www.github.com/snakemake/snakemake-wrappers/commit/85758b7f4d36fb40b9e9826200cba5cf5e95b29b)) * autobump bio/gatk/getpileupsummaries ([snakemake#1277](https://www.github.com/snakemake/snakemake-wrappers/issues/1277)) ([2239049](https://www.github.com/snakemake/snakemake-wrappers/commit/2239049edb6f3324cec7d43f9ecd50cdea30e6d4)) * autobump bio/gatk/haplotypecaller ([snakemake#1256](https://www.github.com/snakemake/snakemake-wrappers/issues/1256)) ([5caa178](https://www.github.com/snakemake/snakemake-wrappers/commit/5caa178fbcbc1dca8444f6a238c868d096b3785a)) * autobump bio/gatk/learnreadorientationmodel ([snakemake#1158](https://www.github.com/snakemake/snakemake-wrappers/issues/1158)) ([97cd747](https://www.github.com/snakemake/snakemake-wrappers/commit/97cd7470196fa28fa229361b81cc10466f87b495)) * autobump bio/gatk/leftalignandtrimvariants ([snakemake#1205](https://www.github.com/snakemake/snakemake-wrappers/issues/1205)) ([377f253](https://www.github.com/snakemake/snakemake-wrappers/commit/377f2533992ff68f563faed1a37059aeadf041bb)) * autobump bio/gatk/markduplicatesspark ([snakemake#1224](https://www.github.com/snakemake/snakemake-wrappers/issues/1224)) ([0893b4e](https://www.github.com/snakemake/snakemake-wrappers/commit/0893b4ec8d1cfecfc2a80c77e6170bbe2bbc981e)) * autobump bio/gatk/mutect ([snakemake#1262](https://www.github.com/snakemake/snakemake-wrappers/issues/1262)) ([a01e719](https://www.github.com/snakemake/snakemake-wrappers/commit/a01e7190abb6f08f8fbcd54d886d36b752171165)) * autobump bio/gatk/splitintervals ([snakemake#1188](https://www.github.com/snakemake/snakemake-wrappers/issues/1188)) ([2d610dd](https://www.github.com/snakemake/snakemake-wrappers/commit/2d610dd129d1b179ff550932416a0dcec6991cb9)) * autobump bio/gatk/variantannotator ([snakemake#1160](https://www.github.com/snakemake/snakemake-wrappers/issues/1160)) ([f7001e2](https://www.github.com/snakemake/snakemake-wrappers/commit/f7001e2c2a6ce9e3fef0fe700bb1a37c56d86c22)) * autobump bio/gatk/variantannotator ([snakemake#1282](https://www.github.com/snakemake/snakemake-wrappers/issues/1282)) ([a158262](https://www.github.com/snakemake/snakemake-wrappers/commit/a1582620d1c628988075455fb9e9d1b6f76ea09e)) * autobump bio/gatk3/baserecalibrator ([snakemake#1273](https://www.github.com/snakemake/snakemake-wrappers/issues/1273)) ([63e7ae2](https://www.github.com/snakemake/snakemake-wrappers/commit/63e7ae2258533c1bb7676d24e6eb163dcafb1801)) * autobump bio/gatk3/printreads ([snakemake#1174](https://www.github.com/snakemake/snakemake-wrappers/issues/1174)) ([22f8e69](https://www.github.com/snakemake/snakemake-wrappers/commit/22f8e696259744d09af4d07053bbe1124f5ca0e5)) * autobump bio/gatk3/printreads ([snakemake#1217](https://www.github.com/snakemake/snakemake-wrappers/issues/1217)) ([5d05b88](https://www.github.com/snakemake/snakemake-wrappers/commit/5d05b8828266a4a33dbeb80900faf6f2df971c7d)) * autobump bio/gdc-api/bam-slicing ([snakemake#1159](https://www.github.com/snakemake/snakemake-wrappers/issues/1159)) ([96a1a42](https://www.github.com/snakemake/snakemake-wrappers/commit/96a1a42b672bdf9fca9a8e8ef5d140cc02d93753)) * autobump bio/hisat2/align ([snakemake#1281](https://www.github.com/snakemake/snakemake-wrappers/issues/1281)) ([a9edff7](https://www.github.com/snakemake/snakemake-wrappers/commit/a9edff748a9eead75e1e43ae5601e7a8c814d221)) * autobump bio/homer/makeTagDirectory ([snakemake#1246](https://www.github.com/snakemake/snakemake-wrappers/issues/1246)) ([44847e2](https://www.github.com/snakemake/snakemake-wrappers/commit/44847e2ef5f63c51f03a2370a0d6768dc49fed46)) * autobump bio/last/lastal ([snakemake#1165](https://www.github.com/snakemake/snakemake-wrappers/issues/1165)) ([ca0d13f](https://www.github.com/snakemake/snakemake-wrappers/commit/ca0d13fad8396327826d41d394861809305c87d5)) * autobump bio/last/lastdb ([snakemake#1254](https://www.github.com/snakemake/snakemake-wrappers/issues/1254)) ([2f11b1e](https://www.github.com/snakemake/snakemake-wrappers/commit/2f11b1e181be6435687bf28ac00c4183ea2868d9)) * autobump bio/lofreq/call ([snakemake#1156](https://www.github.com/snakemake/snakemake-wrappers/issues/1156)) ([c750bbf](https://www.github.com/snakemake/snakemake-wrappers/commit/c750bbf2b0fd45abd3d0ba8b926a6cf404b38c0d)) * autobump bio/lofreq/call ([snakemake#1275](https://www.github.com/snakemake/snakemake-wrappers/issues/1275)) ([e2c4dc2](https://www.github.com/snakemake/snakemake-wrappers/commit/e2c4dc2e8d79f65af02860f5c762bc2a6a3372ab)) * autobump bio/lofreq/indelqual ([snakemake#1283](https://www.github.com/snakemake/snakemake-wrappers/issues/1283)) ([9730460](https://www.github.com/snakemake/snakemake-wrappers/commit/9730460bd457d8b0a8163d49b592d446fe412ae6)) * autobump bio/mashmap ([snakemake#1244](https://www.github.com/snakemake/snakemake-wrappers/issues/1244)) ([fad0092](https://www.github.com/snakemake/snakemake-wrappers/commit/fad0092b61dba723b7d653894950121553f5b126)) * autobump bio/microphaser/filter ([snakemake#1164](https://www.github.com/snakemake/snakemake-wrappers/issues/1164)) ([8932d38](https://www.github.com/snakemake/snakemake-wrappers/commit/8932d3882426094d0de56fc32c8e9b81a72c37e5)) * autobump bio/minimap2/aligner ([snakemake#1177](https://www.github.com/snakemake/snakemake-wrappers/issues/1177)) ([07f4e02](https://www.github.com/snakemake/snakemake-wrappers/commit/07f4e0238bd7c9207aa6c56744dcfe9c5090f7b5)) * autobump bio/open-cravat/module ([snakemake#1232](https://www.github.com/snakemake/snakemake-wrappers/issues/1232)) ([be62998](https://www.github.com/snakemake/snakemake-wrappers/commit/be629987465b94a9f616c3754af8349d33dd875a)) * autobump bio/paladin/align ([snakemake#1234](https://www.github.com/snakemake/snakemake-wrappers/issues/1234)) ([df3c213](https://www.github.com/snakemake/snakemake-wrappers/commit/df3c213a390bd4a9fdebb809ecf31debef74b8f7)) * autobump bio/picard/collectalignmentsummarymetrics ([snakemake#1175](https://www.github.com/snakemake/snakemake-wrappers/issues/1175)) ([856224a](https://www.github.com/snakemake/snakemake-wrappers/commit/856224a4db42aa3ea9937c39745a1c7dfab7ff20)) * autobump bio/picard/collectgcbiasmetrics ([snakemake#1247](https://www.github.com/snakemake/snakemake-wrappers/issues/1247)) ([202ab81](https://www.github.com/snakemake/snakemake-wrappers/commit/202ab81a08990a4d9c2b6915130430928c3414e0)) * autobump bio/picard/collecthsmetrics ([snakemake#1198](https://www.github.com/snakemake/snakemake-wrappers/issues/1198)) ([874fc3f](https://www.github.com/snakemake/snakemake-wrappers/commit/874fc3f6ab40df13dcc3be0a8f68510c2da555f2)) * autobump bio/picard/collectinsertsizemetrics ([snakemake#1190](https://www.github.com/snakemake/snakemake-wrappers/issues/1190)) ([543540a](https://www.github.com/snakemake/snakemake-wrappers/commit/543540aca4afc447f8e22eae8ec01a7a4f143839)) * autobump bio/picard/collectmultiplemetrics ([snakemake#1284](https://www.github.com/snakemake/snakemake-wrappers/issues/1284)) ([1e90009](https://www.github.com/snakemake/snakemake-wrappers/commit/1e900096bac6e3e85b4c795ffd0021116106e11a)) * autobump bio/picard/collecttargetedpcrmetrics ([snakemake#1203](https://www.github.com/snakemake/snakemake-wrappers/issues/1203)) ([7e55cfc](https://www.github.com/snakemake/snakemake-wrappers/commit/7e55cfc9f208bc95ea50fae9e5d52ccb6cd43998)) * autobump bio/picard/markduplicates ([snakemake#1233](https://www.github.com/snakemake/snakemake-wrappers/issues/1233)) ([1708e12](https://www.github.com/snakemake/snakemake-wrappers/commit/1708e127dbd80e5f96bc8224bbcbad7b14daa111)) * autobump bio/picard/mergesamfiles ([snakemake#1176](https://www.github.com/snakemake/snakemake-wrappers/issues/1176)) ([554f501](https://www.github.com/snakemake/snakemake-wrappers/commit/554f501f1c04cf90335b39e38d9919af1aa62d20)) * autobump bio/picard/samtofastq ([snakemake#1218](https://www.github.com/snakemake/snakemake-wrappers/issues/1218)) ([da9e010](https://www.github.com/snakemake/snakemake-wrappers/commit/da9e0101e9e9be9aa124dc454c43e5196746523e)) * autobump bio/picard/sortsam ([snakemake#1248](https://www.github.com/snakemake/snakemake-wrappers/issues/1248)) ([4cf9fdd](https://www.github.com/snakemake/snakemake-wrappers/commit/4cf9fdd2a49cc733f9917ff4c7f2257c770f9bd1)) * autobump bio/pretext/map ([snakemake#1227](https://www.github.com/snakemake/snakemake-wrappers/issues/1227)) ([fafa6ee](https://www.github.com/snakemake/snakemake-wrappers/commit/fafa6eeff201564f274ade75a3c1d31b21b575df)) * autobump bio/qualimap/bamqc ([snakemake#1251](https://www.github.com/snakemake/snakemake-wrappers/issues/1251)) ([4dc2495](https://www.github.com/snakemake/snakemake-wrappers/commit/4dc249559d4f59e9aec43c2b3757ca0a8fc61adb)) * autobump bio/rbt/csvreport ([snakemake#1243](https://www.github.com/snakemake/snakemake-wrappers/issues/1243)) ([25acb2f](https://www.github.com/snakemake/snakemake-wrappers/commit/25acb2f0c99dda2d36da474706dce1f18796022c)) * autobump bio/reference/ensembl-variation ([snakemake#1265](https://www.github.com/snakemake/snakemake-wrappers/issues/1265)) ([ede45c7](https://www.github.com/snakemake/snakemake-wrappers/commit/ede45c783b659b54758b4eee9570c8bd76d0a8da)) * autobump bio/samtools/faidx ([snakemake#1182](https://www.github.com/snakemake/snakemake-wrappers/issues/1182)) ([c223f0c](https://www.github.com/snakemake/snakemake-wrappers/commit/c223f0c429a41bdf3d10652c5a2286fc6034d4eb)) * autobump bio/samtools/faidx ([snakemake#1287](https://www.github.com/snakemake/snakemake-wrappers/issues/1287)) ([511d539](https://www.github.com/snakemake/snakemake-wrappers/commit/511d539680280ec2217e010809d158fa5fca67f9)) * autobump bio/samtools/fixmate ([snakemake#1264](https://www.github.com/snakemake/snakemake-wrappers/issues/1264)) ([f42a717](https://www.github.com/snakemake/snakemake-wrappers/commit/f42a717fa58bb3a1b9b442caa4d32b8778830568)) * autobump bio/samtools/flagstat ([snakemake#1184](https://www.github.com/snakemake/snakemake-wrappers/issues/1184)) ([4f5349c](https://www.github.com/snakemake/snakemake-wrappers/commit/4f5349cf64c1129ddb81b79cb29e9993f34af193)) * autobump bio/samtools/flagstat ([snakemake#1280](https://www.github.com/snakemake/snakemake-wrappers/issues/1280)) ([5fbbbbf](https://www.github.com/snakemake/snakemake-wrappers/commit/5fbbbbff43b98f2f4b9a5908704af9e39c52fd9b)) * autobump bio/samtools/idxstats ([snakemake#1193](https://www.github.com/snakemake/snakemake-wrappers/issues/1193)) ([f930f9e](https://www.github.com/snakemake/snakemake-wrappers/commit/f930f9e15ae64f07415fa6a0ba808b7e3ba12765)) * autobump bio/samtools/idxstats ([snakemake#1259](https://www.github.com/snakemake/snakemake-wrappers/issues/1259)) ([c6b3b40](https://www.github.com/snakemake/snakemake-wrappers/commit/c6b3b4088f4dea4645e1c95203cacaa400eacd4c)) * autobump bio/samtools/index ([snakemake#1214](https://www.github.com/snakemake/snakemake-wrappers/issues/1214)) ([a1ca2a1](https://www.github.com/snakemake/snakemake-wrappers/commit/a1ca2a110b8de164a14aaa9d9964e8681ba95d6b)) * autobump bio/samtools/stats ([snakemake#1222](https://www.github.com/snakemake/snakemake-wrappers/issues/1222)) ([0eb7652](https://www.github.com/snakemake/snakemake-wrappers/commit/0eb76529d289920319bd5368294a2c51fbc8834e)) * autobump bio/seqkit/rmdup ([snakemake#1162](https://www.github.com/snakemake/snakemake-wrappers/issues/1162)) ([88f74d4](https://www.github.com/snakemake/snakemake-wrappers/commit/88f74d4bc502b3299b40eb127f8eefa7e0554fcf)) * autobump bio/seqkit/stats ([snakemake#1213](https://www.github.com/snakemake/snakemake-wrappers/issues/1213)) ([523b69b](https://www.github.com/snakemake/snakemake-wrappers/commit/523b69b193b3e9d5b56964785626f4b07949f7b9)) * autobump bio/snpeff/annotate ([snakemake#1189](https://www.github.com/snakemake/snakemake-wrappers/issues/1189)) ([d873ee8](https://www.github.com/snakemake/snakemake-wrappers/commit/d873ee83265f6f34903a6e8d69f574422cb4f6da)) * autobump bio/snpsift/annotate ([snakemake#1204](https://www.github.com/snakemake/snakemake-wrappers/issues/1204)) ([8c069ff](https://www.github.com/snakemake/snakemake-wrappers/commit/8c069ff88aadba45c394f55a558a2b70cd3d4735)) * autobump bio/snpsift/genesets ([snakemake#1245](https://www.github.com/snakemake/snakemake-wrappers/issues/1245)) ([a2649a7](https://www.github.com/snakemake/snakemake-wrappers/commit/a2649a7e563758599af1834c2871ac19b8c0aa3f)) * autobump bio/snpsift/gwascat ([snakemake#1191](https://www.github.com/snakemake/snakemake-wrappers/issues/1191)) ([0c3c051](https://www.github.com/snakemake/snakemake-wrappers/commit/0c3c0519db9a75c78750a26b407bd9d0ebb88741)) * autobump bio/snpsift/gwascat ([snakemake#1211](https://www.github.com/snakemake/snakemake-wrappers/issues/1211)) ([53d82b9](https://www.github.com/snakemake/snakemake-wrappers/commit/53d82b92e41bf2eab92bd2eb6c92d10f94e4a09a)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([75bd430](https://www.github.com/snakemake/snakemake-wrappers/commit/75bd430edf46275f075a6b344642dece836532fe)) * autobump bio/snpsift/varType ([snakemake#1196](https://www.github.com/snakemake/snakemake-wrappers/issues/1196)) ([eaee058](https://www.github.com/snakemake/snakemake-wrappers/commit/eaee0581606c601eda849d0cbfe255839ae91d46)) * autobump bio/strling/call ([snakemake#1216](https://www.github.com/snakemake/snakemake-wrappers/issues/1216)) ([fa539be](https://www.github.com/snakemake/snakemake-wrappers/commit/fa539be3e05ac73058c7dc450719363117014d28)) * autobump bio/strling/extract ([snakemake#1272](https://www.github.com/snakemake/snakemake-wrappers/issues/1272)) ([128d8b9](https://www.github.com/snakemake/snakemake-wrappers/commit/128d8b9fcc04b980822a730e7f2c4626e30993b7)) * autobump bio/strling/index ([snakemake#1228](https://www.github.com/snakemake/snakemake-wrappers/issues/1228)) ([6cc0059](https://www.github.com/snakemake/snakemake-wrappers/commit/6cc00599fa9dd88d8559501f08fdd691a1b6668c)) * autobump bio/tximport ([snakemake#1278](https://www.github.com/snakemake/snakemake-wrappers/issues/1278)) ([f309cb9](https://www.github.com/snakemake/snakemake-wrappers/commit/f309cb98b6bc4fa762d3ba2043612c6e54c5d51f)) * autobump bio/umis/bamtag ([snakemake#1260](https://www.github.com/snakemake/snakemake-wrappers/issues/1260)) ([1334743](https://www.github.com/snakemake/snakemake-wrappers/commit/1334743834a811551f799d7e18038a5a546b9dbb)) * autobump bio/varscan/mpileup2indel ([snakemake#1186](https://www.github.com/snakemake/snakemake-wrappers/issues/1186)) ([72816c8](https://www.github.com/snakemake/snakemake-wrappers/commit/72816c80df421f1dad58f63559e1671c4b00a5af)) * autobump bio/varscan/mpileup2snp ([snakemake#1230](https://www.github.com/snakemake/snakemake-wrappers/issues/1230)) ([0266507](https://www.github.com/snakemake/snakemake-wrappers/commit/0266507d87ed97c4a67bef33cf39362fe32ec174)) * autobump bio/varscan/somatic ([snakemake#1178](https://www.github.com/snakemake/snakemake-wrappers/issues/1178)) ([1882608](https://www.github.com/snakemake/snakemake-wrappers/commit/18826087b21fb1f5279cfa8eea349fda58bcd50a)) * autobump bio/vembrane/filter ([snakemake#1229](https://www.github.com/snakemake/snakemake-wrappers/issues/1229)) ([1a30d43](https://www.github.com/snakemake/snakemake-wrappers/commit/1a30d43738fccdf0b9bfdc3477adbd4cbb3a8c38)) * autobump bio/vep/plugins ([snakemake#1200](https://www.github.com/snakemake/snakemake-wrappers/issues/1200)) ([a7909be](https://www.github.com/snakemake/snakemake-wrappers/commit/a7909be8b31e68c2f933d77b0befaf8bfe005d80)) * autobump bio/vg/construct ([snakemake#1226](https://www.github.com/snakemake/snakemake-wrappers/issues/1226)) ([4b2745f](https://www.github.com/snakemake/snakemake-wrappers/commit/4b2745f6ed8d987b355db06af29c62ffa0ad54f4)) * autobump bio/vg/ids ([snakemake#1285](https://www.github.com/snakemake/snakemake-wrappers/issues/1285)) ([8ffb3ea](https://www.github.com/snakemake/snakemake-wrappers/commit/8ffb3ea8ba79ce933ec7cf7445065dd4b26e15d1)) * autobump bio/vg/prune ([snakemake#1263](https://www.github.com/snakemake/snakemake-wrappers/issues/1263)) ([8a36dec](https://www.github.com/snakemake/snakemake-wrappers/commit/8a36deccdf7750b41625f152843d02e5ef0bd257)) * bump Salmon to v1.10.1 ([snakemake#1168](https://www.github.com/snakemake/snakemake-wrappers/issues/1168)) ([a718777](https://www.github.com/snakemake/snakemake-wrappers/commit/a718777f285f175c5f6c67170b6d6440d504184b)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Automatic update of bio/samtools/index.