fix: fix bug in pindel2vcf wrapper (#433)

* fix pindel2vcfwrapper fix: current implementation is incorrect. It applies join to a string instead of a list. * Update wrapper.py
snakemake · Jan 14, 2022 · f94b225 · f94b225
1 parent 16d1795
commit f94b225
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/bio/pindel/pindel2vcf/wrapper.py b/bio/pindel/pindel2vcf/wrapper.py
@@ -15,7 +15,8 @@
     "D",
     "SI",
     "INV",
-    "INV_final" "TD",
+    "INV_final",
+    "TD",
     "LI",
     "BP",
     "CloseEndMapped",
@@ -26,7 +27,7 @@
 def split_file_name(file_parts, file_ending_index):
     return (
         "_".join(file_parts[:file_ending_index]),
-        "_".join(file_parts[file_ending_index]),
+        "_".join(file_parts[file_ending_index:]),
     )