Skip to content

Commit

Permalink
perf: autobump bio/cnvkit/export (#2585)
Browse files Browse the repository at this point in the history
Automatic bump of bio/cnvkit/export.

---------

Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
  • Loading branch information
snakedeploy-bot[bot] committed Jan 26, 2024
1 parent bfc9e1d commit e213c0f
Show file tree
Hide file tree
Showing 2 changed files with 28 additions and 25 deletions.
51 changes: 27 additions & 24 deletions bio/cnvkit/export/environment.linux-64.pin.txt
Expand Up @@ -16,7 +16,7 @@ https://conda.anaconda.org/conda-forge/noarch/libstdcxx-devel_linux-64-13.2.0-ha
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_3.conda#937eaed008f6bf2191c5fe76f87755e9
https://conda.anaconda.org/conda-forge/noarch/nomkl-1.0-h5ca1d4c_0.tar.bz2#9a66894dfd07c4510beb6b3f9672ccc0
https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-4_cp310.conda#26322ec5d7712c3ded99dd656142b8ce
https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
https://conda.anaconda.org/conda-forge/noarch/tzdata-2023d-h0c530f3_0.conda#8dee24b8be2d9ff81e7bd4d7d97ff1b0
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29
https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_3.conda#7124cbb46b13d395bdde68f2d215c989
https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.12-he073ed8_16.conda#071ea8dceff4d30ac511f4a2f8437cd1
Expand All @@ -25,7 +25,7 @@ https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.40-hf60
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_3.conda#23fdf1fef05baeb7eadc2aed5fb0011f
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.23.0-hd590300_0.conda#d459949bc10f64dee1595c176c2e6291
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.25.0-hd590300_0.conda#89e40af02dd3a0846c0c1131c5126706
https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8
https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37
https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-h59595ed_0.conda#0e33ef437202db431aa5a928248cf2e8
Expand All @@ -40,18 +40,19 @@ https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172b
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_3.conda#c714d905cdfa0e70200f68b80cc04764
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_1.conda#4b06b43d0eca61db2899e4d7a289c302
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e
https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-2.1.5.1-hd590300_1.conda#323e90742f0f48fc22bea908735f55e6
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-13.2.0-h7e041cc_3.conda#c63848839569bb82a3eff11f01e5de00
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libuv-1.46.0-hd590300_0.conda#d23c76f7e6dcd6243d1b6ef5e62d17d2
https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.3.2-hd590300_0.conda#30de3fd9b3b602f7473f30e684eeea8c
https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
https://conda.anaconda.org/conda-forge/linux-64/make-4.3-hd18ef5c_1.tar.bz2#4049ebfd3190b580dffe76daed26155a
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.2.0-hd590300_1.conda#603827b39ea2b835268adb8c821b8570
https://conda.anaconda.org/conda-forge/linux-64/pixman-0.42.2-h59595ed_0.conda#700edd63ccd5fc66b70b1c028cea9a68
https://conda.anaconda.org/conda-forge/linux-64/pixman-0.43.0-h59595ed_0.conda#6b4b43013628634b6cfdee6b74fd696b
https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036
https://conda.anaconda.org/conda-forge/linux-64/sed-4.8-he412f7d_0.tar.bz2#7362f0042e95681f5d371c46c83ebd08
https://conda.anaconda.org/conda-forge/linux-64/sleef-3.5.1-h9b69904_2.tar.bz2#6e016cf4c525d04a7bd038cee53ad3fd
Expand Down Expand Up @@ -90,10 +91,10 @@ https://conda.anaconda.org/conda-forge/linux-64/gfortran_impl_linux-64-13.2.0-h7
https://conda.anaconda.org/conda-forge/linux-64/gxx_impl_linux-64-13.2.0-h338b0a0_3.conda#a5e463121f06f300e5462f98b82d0709
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844
https://conda.anaconda.org/conda-forge/linux-64/libglib-2.78.1-hebfc3b9_0.conda#ddd09e8904fde46b85f41896621803e6
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.25-pthreads_h413a1c8_0.conda#d172b34a443b95f86089e8229ddc9a17
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.26-pthreads_h413a1c8_0.conda#760ae35415f5ba8b15d09df5afe8b23a
https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.6.0-h8b53f26_0.conda#097c175e54beba8b42dcc5dd49299ca1
https://conda.anaconda.org/conda-forge/linux-64/mpc-1.3.1-hfe3b2da_0.conda#289c71e83dc0daa7d4c81f04180778ca
https://conda.anaconda.org/conda-forge/linux-64/python-3.10.13-hd12c33a_0_cpython.conda#f3a8c32aa764c3e7188b4b810fc9d6ce
https://conda.anaconda.org/conda-forge/linux-64/python-3.10.13-hd12c33a_1_cpython.conda#ed38140af93f81319ebc472fbcf16cca
https://conda.anaconda.org/conda-forge/linux-64/tktable-2.10-h0c5db8f_5.conda#9464044754ea25557a9c93f0327d90a6
https://conda.anaconda.org/conda-forge/linux-64/xorg-libx11-1.8.7-h8ee46fc_0.conda#49e482d882669206653b095f5206c05b
https://conda.anaconda.org/conda-forge/linux-64/brotli-1.1.0-hd590300_1.conda#f27a24d46e3ea7b70a1f98e50c62508f
Expand All @@ -104,24 +105,25 @@ https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda#5
https://conda.anaconda.org/conda-forge/noarch/filelock-3.13.1-pyhd8ed1ab_0.conda#0c1729b74a8152fde6a38ba0a2ab9f45
https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.2-h14ed4e7_0.conda#0f69b688f52ff6da70bccb7ff7001d1d
https://conda.anaconda.org/conda-forge/noarch/freetype-py-2.3.0-pyhd8ed1ab_0.tar.bz2#e4a165cdbbaed5bbb6e653b823156151
https://conda.anaconda.org/conda-forge/noarch/fsspec-2023.12.2-pyhca7485f_0.conda#bf40f2a8835b78b1f91083d306b493d2
https://conda.anaconda.org/conda-forge/linux-64/gmpy2-2.1.2-py310h3ec546c_1.tar.bz2#73f6fa50c32ddd985cf5fba7b890a75c
https://conda.anaconda.org/conda-forge/linux-64/kiwisolver-1.4.5-py310hd41b1e2_1.conda#b8d67603d43b23ce7e988a5d81a7ab79
https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.15-h7f713cb_2.conda#9ab79924a3760f85a799f21bc99bd655
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-20_linux64_openblas.conda#2b7bb4f7562c8cf334fc2e20c2d28abc
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-21_linux64_openblas.conda#0ac9f44fc096772b0aa092119b00c3ca
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.5.0-hca28451_0.conda#7144d5a828e2cae218e0e3c98d8a0aeb
https://conda.anaconda.org/conda-forge/linux-64/llvmlite-0.41.1-py310h1b8f574_0.conda#70dc1a1c4b77e1c57ca9f87ac75d9812
https://conda.anaconda.org/conda-forge/linux-64/markupsafe-2.1.3-py310h2372a71_1.conda#b74e07a054c479e45a83a83fc5be713c
https://conda.anaconda.org/conda-forge/linux-64/markupsafe-2.1.4-py310h2372a71_0.conda#76cd8db42baacfc94aa4d3a2b8e9e453
https://conda.anaconda.org/conda-forge/noarch/mpmath-1.3.0-pyhd8ed1ab_0.conda#dbf6e2d89137da32fa6670f3bffc024e
https://conda.anaconda.org/conda-forge/noarch/munkres-1.1.4-pyh9f0ad1d_0.tar.bz2#2ba8498c1018c1e9c61eb99b973dfe19
https://conda.anaconda.org/conda-forge/noarch/networkx-3.2.1-pyhd8ed1ab_0.conda#425fce3b531bed6ec3c74fab3e5f0a1c
https://conda.anaconda.org/conda-forge/noarch/nose-1.3.7-py_1006.tar.bz2#382019d5f8e9362ef6f60a8d4e7bce8f
https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.0-h488ebb8_3.conda#128c25b7fe6a25286a48f3a6a9b5b6f3
https://conda.anaconda.org/conda-forge/noarch/packaging-23.2-pyhd8ed1ab_0.conda#79002079284aa895f883c6b7f3f88fd6
https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.1.1-pyhd8ed1ab_0.conda#176f7d56f0cfe9008bdf1bccd7de02fb
https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2023.3-pyhd8ed1ab_0.conda#2590495f608a63625e165915fb4e2e34
https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2023.4-pyhd8ed1ab_0.conda#c79cacf8a06a51552fc651652f170208
https://conda.anaconda.org/conda-forge/noarch/pytz-2023.3.post1-pyhd8ed1ab_0.conda#c93346b446cd08c169d843ae5fc0da97
https://conda.anaconda.org/bioconda/noarch/pyvcf3-1.0.3-pyhdfd78af_0.tar.bz2#2471bf4fad9f15602ad24164adf1a22a
https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
https://conda.anaconda.org/conda-forge/noarch/setuptools-69.0.3-pyhd8ed1ab_0.conda#40695fdfd15a92121ed2922900d0308b
https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
https://conda.anaconda.org/conda-forge/noarch/threadpoolctl-3.2.0-pyha21a80b_0.conda#978d03388b62173b8e6f79162cf52b86
https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.9.0-pyha770c72_0.conda#a92a6440c3fe7052d63244f3aba2a4a7
Expand All @@ -133,34 +135,35 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hd590300_1.cond
https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda#2e4d6bc0b14e10f895fc6791a7d9b26a
https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-h3faef2a_0.conda#f907bb958910dc404647326ca80c263e
https://conda.anaconda.org/conda-forge/linux-64/curl-8.5.0-hca28451_0.conda#e5e83fb15e752dbc8f54c4ac7da7d0f1
https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.46.0-py310h2372a71_0.conda#3c0109417cbcdabfed289360886b036d
https://conda.anaconda.org/bioconda/linux-64/htslib-1.19-h81da01d_0.tar.bz2#70a467e903079d86316ed9ecff262582
https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-7.0.0-pyha770c72_0.conda#a941237cd06538837b25cd245fcd25d8
https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.2-pyhd8ed1ab_1.tar.bz2#c8490ed5c70966d232fdd389d0dbed37
https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.47.2-py310h2372a71_0.conda#0688fca50c84de6ff0df1c6440941e0e
https://conda.anaconda.org/bioconda/linux-64/htslib-1.19.1-h81da01d_0.tar.bz2#a2b558d267544e66aef5551728b3960a
https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-7.0.1-pyha770c72_0.conda#746623a787e06191d80a2133e5daff17
https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.3-pyhd8ed1ab_0.conda#e7d8df6509ba635247ff9aea31134262
https://conda.anaconda.org/conda-forge/noarch/joblib-0.17.0-py_0.tar.bz2#9013e588e7ca1585581024dd00daa174
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-20_linux64_openblas.conda#36d486d72ab64ffea932329a1d3729a3
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-20_linux64_openblas.conda#6fabc51f5e647d09cc010c40061557e0
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-21_linux64_openblas.conda#4a3816d06451c4946e2db26b86472cb6
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-21_linux64_openblas.conda#1a42f305615c3867684e049e85927531
https://conda.anaconda.org/conda-forge/linux-64/pillow-10.0.1-py310h29da1c1_1.conda#8e93b1c69cddf89fd412178d3d418bae
https://conda.anaconda.org/conda-forge/noarch/pip-23.3.1-pyhd8ed1ab_0.conda#2400c0b86889f43aa52067161e1fb108
https://conda.anaconda.org/conda-forge/noarch/pip-23.3.2-pyhd8ed1ab_0.conda#8591c748f98dcc02253003533bc2e4b1
https://conda.anaconda.org/bioconda/linux-64/pysam-0.22.0-py310h41dec4a_0.tar.bz2#a006237db7a1f3313b0e40945727e7b2
https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.8.2-pyhd8ed1ab_0.tar.bz2#dd999d1cc9f79e67dbb855c8924c7984
https://conda.anaconda.org/conda-forge/noarch/sympy-1.12-pypyh9d50eac_103.conda#2f7d6347d7acf6edf1ac7f2189f44c8f
https://conda.anaconda.org/conda-forge/noarch/tqdm-4.66.1-pyhd8ed1ab_0.conda#03c97908b976498dcae97eb4e4f3149c
https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-8.3.0-h3d44ed6_0.conda#5a6f6c00ef982a9bc83558d9ac8f64a0
https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.2-py310hb13e2d6_0.conda#d3147cfbf72d6ae7bba10562208f6def
https://conda.anaconda.org/conda-forge/linux-64/libtorch-2.1.0-cpu_generic_h7795521_3.conda#5cbed51c88eb01f9c9b3a369f1b0e055
https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.3-py310hb13e2d6_0.conda#e5e9c6f112d581cdf465b8ca861cb14f
https://conda.anaconda.org/conda-forge/linux-64/pycairo-1.25.1-py310hda9f760_0.conda#4c12657351d201bc27cbe178e3f02bbd
https://conda.anaconda.org/conda-forge/linux-64/biopython-1.81-py310h2372a71_1.conda#41622196d53667e829cdbebe417c78b9
https://conda.anaconda.org/conda-forge/linux-64/biopython-1.83-py310h2372a71_0.conda#0128595946cebfaaf212cc45d4b9cd3c
https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.0-py310hd41b1e2_0.conda#85d2aaa7af046528d339da1e813c3a9f
https://conda.anaconda.org/conda-forge/linux-64/numba-0.58.1-py310h7dc5dd1_0.conda#98dd733faaeedc0730013b22b0ad4d7b
https://conda.anaconda.org/conda-forge/linux-64/pandas-2.1.4-py310hcc13569_0.conda#410f7e83992a591e492c25049a859254
https://conda.anaconda.org/conda-forge/linux-64/pandas-2.2.0-py310hcc13569_0.conda#514c836161e8b2e43e7d8fb7a28a92c4
https://conda.anaconda.org/conda-forge/linux-64/pango-1.50.14-ha41ecd1_2.conda#1a66c10f6a0da3dbd2f3a68127e7f6a0
https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.0.0-cpu_generic_py310hb3dc40f_4.conda#a0e8685e01589ce36976d50b5d61ade7
https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.1.0-cpu_generic_py310h730b6a9_3.conda#07c75c9631738f380ab669e846a5485c
https://conda.anaconda.org/conda-forge/noarch/rlpycairo-0.2.0-pyhd8ed1ab_0.conda#71d8c309e4e5c13d8f4113b5a394e633
https://conda.anaconda.org/conda-forge/linux-64/scipy-1.11.4-py310hb13e2d6_0.conda#f0063b2885bfae11324a00a693f88781
https://conda.anaconda.org/conda-forge/linux-64/scipy-1.12.0-py310hb13e2d6_2.conda#cd3baec470071490bc5ab05da64c52b5
https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.8.2-py310h62c0568_0.conda#3cbbc7d0b54df02c9a006d3de14911d9
https://conda.anaconda.org/bioconda/noarch/pyfaidx-0.7.2.2-pyhdfd78af_0.tar.bz2#812c2af3b098fd2a96c9da54086db891
https://conda.anaconda.org/bioconda/noarch/pyfaidx-0.8.1.1-pyhdfd78af_0.tar.bz2#af3ab300be5e1a5eaa934daee4a63616
https://conda.anaconda.org/conda-forge/linux-64/r-base-4.3.1-h639d9d3_5.conda#f320a6b4aba89a080d757a365138b642
https://conda.anaconda.org/conda-forge/linux-64/reportlab-4.0.8-py310h2372a71_0.conda#6fb4ffebed2b79fa3e6323bc240f740d
https://conda.anaconda.org/conda-forge/linux-64/reportlab-4.0.9-py310h2372a71_0.conda#6bb41280990890ddaeb6a292a93033eb
https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.0.2-py310h1246948_0.tar.bz2#c930949cd0b2dc2d022cb1161a2ff701
https://conda.anaconda.org/conda-forge/noarch/apricot-select-0.6.1-pyhd8ed1ab_0.conda#5dfc759026619aa55b56717120c0e458
https://conda.anaconda.org/bioconda/linux-64/bioconductor-dnacopy-1.76.0-r43h9913872_0.tar.bz2#a5acbf7c9ad7c0c9f6c6d677f24c7231
Expand Down
2 changes: 1 addition & 1 deletion bio/cnvkit/export/environment.yaml
Expand Up @@ -4,4 +4,4 @@ channels:
- nodefaults
dependencies:
- cnvkit =0.9.10
- htslib =1.19
- htslib =1.19.1

0 comments on commit e213c0f

Please sign in to comment.