fix: bcftools filter cannot run with mem options and this will preven…

…t mem-max to be set. (#464)
snakemake · Mar 9, 2022 · d7a0de4 · d7a0de4
1 parent cb2539d
commit d7a0de4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bio/bcftools/filter/wrapper.py b/bio/bcftools/filter/wrapper.py
@@ -7,7 +7,7 @@
 from snakemake.shell import shell
 from snakemake_wrapper_utils.bcftools import get_bcftools_opts
 
-bcftools_opts = get_bcftools_opts(snakemake)
+bcftools_opts = get_bcftools_opts(snakemake, parse_memory=False)
 log = snakemake.log_fmt_shell(stdout=False, stderr=True)
 
 if len(snakemake.output) > 1: