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fix: give conda-forge highest priority to ensure proper semantic unde…
…r strict channel priorities
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@@ -1,5 +1,4 @@ | ||
channels: | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
- adapterremoval =2.3 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- conda-forge | ||
- bioconda | ||
- defaults | ||
dependencies: | ||
- arriba ==1.1.0 |
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Original file line number | Diff line number | Diff line change |
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@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- art ==2016.06.05 |
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Original file line number | Diff line number | Diff line change |
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@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- assembly-stats=1.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bamtools ==2.5.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bamtools ==2.5.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bamtools ==2.5.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bamtools ==2.5.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bbmap ==38.90 | ||
- snakemake-wrapper-utils ==0.1.3 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.12 | ||
- snakemake-wrapper-utils ==0.2.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bcftools ==1.12 | ||
- snakemake-wrapper-utils ==0.2 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 | ||
- snakemake-wrapper-utils =0.2 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools =1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools ==1.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools ==1.12 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- bcftools ==1.12 | ||
- snakemake-wrapper-utils ==0.2 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools =2.29 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools ==2.29.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools ==2.29.2 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools =2.29.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools =2.29.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools =2.29.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bedtools =2.29 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- samtools =1.10 | ||
- curl |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- bioconda | ||
dependencies: | ||
- htslib ==1.12 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- biobambam =2.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 ==2.4.2 | ||
- bismark ==0.23.0 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- blast ==2.11 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- blast ==2.11.0 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bowtie2 =2.4 # Keep consistent with version specified in bowtie2/align |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- busco==5.1.2 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa-mem2 ==2.2.1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa-mem2 ==2.2.1 | ||
- sambamba ==0.7.1 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa-mem2 ==2.2.1 | ||
- samtools ==1.12 | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa ==0.7.17 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,5 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa ==0.7.17 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,6 @@ | ||
channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults | ||
- bioconda | ||
dependencies: | ||
- bwa ==0.7.17 | ||
- sambamba ==0.7.1 | ||
|
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