fix: restrict bwa wrappers' picard installation to picard-slim (e.g. …

…removes r-base dependency) (#484) * restrict bwa wrappers' picard installation to picard-slim (e.g. removes r-base dependency) * update picard-slim deps to latest minor and unpin patch version
snakemake · May 5, 2022 · bd3cdbc · bd3cdbc
1 parent dd8c066
commit bd3cdbc
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/bio/bwa-mem2/mem/environment.yaml b/bio/bwa-mem2/mem/environment.yaml
@@ -5,4 +5,4 @@ channels:
 dependencies:
   - bwa-mem2 ==2.2.1
   - samtools ==1.12
-  - picard ==2.23
+  - picard-slim =2.27
diff --git a/bio/bwa/mem/environment.yaml b/bio/bwa/mem/environment.yaml
@@ -5,4 +5,4 @@ channels:
 dependencies:
   - bwa ==0.7.17
   - samtools =1.12
-  - picard =2.25
+  - picard-slim =2.27
diff --git a/bio/bwa/sampe/environment.yaml b/bio/bwa/sampe/environment.yaml
@@ -4,4 +4,4 @@ channels:
 dependencies:
   - bwa ==0.7.17
   - samtools ==1.9
-  - picard ==2.20.1
+  - picard-slim =2.27
diff --git a/bio/bwa/samse/environment.yaml b/bio/bwa/samse/environment.yaml
@@ -4,4 +4,4 @@ channels:
 dependencies:
   - bwa ==0.7.17
   - samtools ==1.9
-  - picard ==2.20.1
+  - picard-slim =2.27
diff --git a/bio/bwa/samxe/environment.yaml b/bio/bwa/samxe/environment.yaml
@@ -4,4 +4,4 @@ channels:
 dependencies:
   - bwa ==0.7.17
   - samtools ==1.9
-  - picard ==2.20.1
+  - picard-slim =2.27