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fix: improve bcftools norm example rule (#561)
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johanneskoester committed Sep 28, 2022
1 parent 3932d35 commit ad41354
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions bio/bcftools/norm/test/Snakefile
@@ -1,12 +1,13 @@
rule norm_vcf:
input:
"{prefix}.bcf",
#ref="genome.fasta" # optional reference (will be translated into the -f option)
output:
"{prefix}.norm.vcf",
"{prefix}.norm.vcf", # can also be .bcf, corresponding --output-type parameter is inferred automatically
log:
"{prefix}.norm.log",
params:
# uncompressed_bcf=False,
extra="--rm-dup none", # optional
#uncompressed_bcf=False,
wrapper:
"master/bio/bcftools/norm"

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