perf: autobump bio/hap.py/pre.py (#1414)

Automatic update of bio/hap.py/pre.py.

---------

Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
Co-authored-by: Filipe G. Vieira <1151762+fgvieira@users.noreply.github.com>

bio/hap.py/pre.py/environment.yaml

@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - hap.py =0.3.14
+  - hap.py =0.3.15

bio/hap.py/pre.py/test/Snakefile

@@ -1,14 +1,16 @@
 rule preprocess_variants:
     input:
         ##vcf/bcf
-        variants="variants.vcf"
+        variants="variants.vcf",
     output:
-        "normalized/variants.vcf"
+        "normalized/variants.vcf.gz",
+    log:
+        "log/pre.log",
     params:
         ## path to reference genome
         genome="genome.fasta",
         ## parameters such as -L to left-align variants
-        extra="-L"
+        extra="-L",
     threads: 2
     wrapper:
         "master/bio/hap.py/pre.py"

test.py

@@ -2709,7 +2709,7 @@ def test_happy_prepy():
 def test_happy_prepy():
     run(
         "bio/hap.py/pre.py",
-        ["snakemake", "--cores", "1", "normalized/variants.vcf", "--use-conda", "-F"],
+        ["snakemake", "--cores", "1", "normalized/variants.vcf.gz", "--use-conda", "-F"],
     )