fix: channel definitions for cooltools (and update version to 0.5.2),…

… genefuse, genomescope, qualimap and meryl (#980)

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### Description

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### QC
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* [ ] I confirm that:

For all wrappers added by this PR, 

* there is a test case which covers any introduced changes,
* `input:` and `output:` file paths in the resulting rule can be changed
arbitrarily,
* either the wrapper can only use a single core, or the example rule
contains a `threads: x` statement with `x` being a reasonable default,
* rule names in the test case are in
[snake_case](https://en.wikipedia.org/wiki/Snake_case) and somehow tell
what the rule is about or match the tools purpose or name (e.g.,
`map_reads` for a step that maps reads),
* all `environment.yaml` specifications follow [the respective best
practices](https://stackoverflow.com/a/64594513/2352071),
* wherever possible, command line arguments are inferred and set
automatically (e.g. based on file extensions in `input:` or `output:`),
* all fields of the example rules in the `Snakefile`s and their entries
are explained via comments (`input:`/`output:`/`params:` etc.),
* `stderr` and/or `stdout` are logged correctly (`log:`), depending on
the wrapped tool,
* temporary files are either written to a unique hidden folder in the
working directory, or (better) stored where the Python function
`tempfile.gettempdir()` points to (see
[here](https://docs.python.org/3/library/tempfile.html#tempfile.gettempdir);
this also means that using any Python `tempfile` default behavior
works),
* the `meta.yaml` contains a link to the documentation of the respective
tool or command,
* `Snakefile`s pass the linting (`snakemake --lint`),
* `Snakefile`s are formatted with
[snakefmt](https://github.com/snakemake/snakefmt),
* Python wrapper scripts are formatted with
[black](https://black.readthedocs.io).
* Conda environments use a minimal amount of channels, in recommended
ordering. E.g. for bioconda, use (conda-forge, bioconda, nodefaults, as
conda-forge should have highest priority and defaults channels are
usually not needed because most packages are in conda-forge nowadays).

bio/cooltools/eigs_cis/environment.yaml

@@ -1,7 +1,7 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
   - ucsc-bedgraphtobigwig
   - cooltools =0.5.2

bio/cooltools/eigs_trans/environment.yaml

@@ -1,7 +1,7 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
   - ucsc-bedgraphtobigwig
   - cooltools =0.5.2

bio/cooltools/expected_cis/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5.1
+  - cooltools =0.5.2

bio/cooltools/expected_trans/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5.1
+  - cooltools =0.5.2

bio/cooltools/genome/binnify/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5
+  - cooltools =0.5.2

bio/cooltools/genome/gc/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5
+  - cooltools =0.5.2

bio/cooltools/insulation/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5
+  - cooltools =0.5.2

bio/cooltools/pileup/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
   - cooltools =0.5.2

bio/cooltools/saddle/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
-  - defaults
   - bioconda
+  - nodefaults
 dependencies:
-  - cooltools =0.5.1
+  - cooltools =0.5.2

bio/genefuse/environment.yaml

@@ -1,6 +1,6 @@
 channels:
-  - bioconda
   - conda-forge
-  - defaults
+  - bioconda
+  - nodefaults
 dependencies:
   - genefuse =0.8.0

bio/genomescope/environment.yaml

@@ -1,6 +1,6 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - genomescope2 =2.0

bio/meryl/sets/environment.yaml

@@ -1,6 +1,6 @@
 channels:
-  - bioconda
   - conda-forge
-  - defaults
+  - bioconda
+  - nodefaults
 dependencies:
   - meryl =2013

bio/meryl/stats/environment.yaml

@@ -1,6 +1,6 @@
 channels:
-  - bioconda
   - conda-forge
-  - defaults
+  - bioconda
+  - nodefaults
 dependencies:
   - meryl =2013

bio/qualimap/bamqc/environment.yaml

@@ -1,7 +1,7 @@
 channels:
-  - bioconda
   - conda-forge
-  - defaults
+  - bioconda
+  - nodefaults
 dependencies:
   - qualimap =2.2.2d
   - snakemake-wrapper-utils =0.5.0