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Hi there, I ran cellsnp on my mouse data but ran into this error:
[W::check_args] Max depth set to maximum value (2147483647)
[I::main] mode 2b: pileup 22 whole chromosomes in 1 sample(s).
[E::csp_pileup] could not parse name for chrom 20.
[E::main] running mode 2b failed.
[E::main] Quiting...
[I::main] end time: 2022-10-27 23:59:26
[I::main] time spent: 0 seconds.
I just noticed that the default param for --chrom is 1-22 however it's only 1-19 and M,X,Y in mouse, so if the default chromosomes could be automatically extracted from the input it'd be very much appreciated, thank you very much!
The text was updated successfully, but these errors were encountered:
Hi there, I ran cellsnp on my mouse data but ran into this error:
I just noticed that the default param for
--chrom
is 1-22 however it's only 1-19 and M,X,Y in mouse, so if the default chromosomes could be automatically extracted from the input it'd be very much appreciated, thank you very much!The text was updated successfully, but these errors were encountered: