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427 Open 7,057 Closed
427 Open 7,057 Closed
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Issues list

Error when using SCTransform on layered Seurat object: Error in new.data[new.features, colnames(x = object), drop = FALSE] : subscript out of bounds
#8828 opened Apr 27, 2024 by sbamopoulos
non-zero exit bug Something isn't working
#8827 opened Apr 26, 2024 by drchubos
Background gene list for GSEA
#8825 opened Apr 25, 2024 by zincfingers89
SketchData throws ERROR
#8823 opened Apr 25, 2024 by balthasar0810
@Gesmira
1
Issue with Pseudobulk using multiome v5 seurat object bug Something isn't working
#8821 opened Apr 25, 2024 by leecon30
2
why renaming Idents in Seurat object doesn't work? bug Something isn't working
#8820 opened Apr 25, 2024 by yeroslaviz
1
FindMarkers with the 'lr' test uses all cores despite changing future::plan() bug Something isn't working
#8818 opened Apr 24, 2024 by jmrussell
Problem in using sctransform in Seurat
#8816 opened Apr 24, 2024 by twb2540
Unimodal UMAP Projection of CosMx data onto snRNAseq data
#8814 opened Apr 23, 2024 by rbutleriii
PercentageFeatureSet error
#8813 opened Apr 23, 2024 by iva302
4
Warning messages and no Dimnames with Nanostring FFPE NSCLC CosMx Data Set bug Something isn't working
#8812 opened Apr 23, 2024 by Rayan21100
Issue with RunUMAP in Seurat5: Error in py_get_attr(x, name, FALSE) : AttributeError: module 'umap' has no attribute 'pkg_resources' bug Something isn't working
#8802 opened Apr 20, 2024 by yojetsharma
Normalization for Dataset with Multiple Conditions and Multiple Samples in Each Condition
#8800 opened Apr 20, 2024 by Nack3l
Error when converting SCE object to Seurat despite counts and logcounts present in assays
#8798 opened Apr 19, 2024 by sagrikachugh
2
Error while running FindTransferAnchors on Seurat V5
#8794 opened Apr 19, 2024 by melodyyazdi
1
Error object 'log_umi' not found when reference.SCT.model is set
#8793 opened Apr 19, 2024 by z5ouyang
2
Add Fluorescence Images to Seurat object enhancement New feature or request
#8790 opened Apr 18, 2024 by leejs0620
1
FindIntegrationAnchors() returns "no applicable method for 'Assays' applied to an object of class "NULL""
#8789 opened Apr 18, 2024 by lucas-vicuna
2
Inconsistent FoldChanges in FindMarkers for different tests bug Something isn't working
#8788 opened Apr 18, 2024 by morallawwithin
1
Detecting Pseudobulk DACRs with FindMarkers using DESeq2
#8784 opened Apr 18, 2024 by yls2g13
3
Same data, different Pearson Residuals more-information-needed We need more information before this can be addressed
#8787 opened Apr 17, 2024 by luxhexmaster
2
Error with vars.to.regress: "contrasts can be applied only to factors with 2 or more levels"
#8780 opened Apr 16, 2024 by yesitsjess
!Significant differences in avg_log2FC between Seurat versions 4 and 5 in FindMarkers function
#8776 opened Apr 15, 2024 by xinmiaoyan
2
Following up: Inconsistent behavior of 'merge' for RNA and SCT assays #8687
#8775 opened Apr 15, 2024 by anaccsilva
1
Issue with dotplot due to "duplicate row.names" in seurat object even though they are unique bug Something isn't working
#8772 opened Apr 14, 2024 by HOEFSLE
1
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