parse: change the default walk policy to 5unique

open2c · Apr 7, 2024 · e9250f9 · e9250f9
1 parent 1e5459c
commit e9250f9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pairtools/cli/parse.py b/pairtools/cli/parse.py
@@ -123,7 +123,7 @@
 @click.option(
     "--walks-policy",
     type=click.Choice(["mask", "5any", "5unique", "3any", "3unique", "all"]),
-    default="mask",
+    default="5unique",
     help="the policy for reporting unrescuable walks (reads containing more"
     " than one alignment on one or both sides, that can not be explained by a"
     " single ligation between two mappable DNA fragments)."