Discussions

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  💡

  extended cooler-like API for arbitrary data transformations (e.g. O/E)

  sergpolly started Jan 21, 2024 in Ideas

  

  

  

  

  6
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  🛠️

  compose Obs and Exp snipper classes -> ObsExpSnipper

  sergpolly started Feb 11, 2024 in Technical details

  

  

  1
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  🛠️

  can we drop cython as a dependency in favor of numba

  sergpolly started Jan 21, 2024 in Technical details

  

  

  0
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  💡

  saddles in cis by distance - flexible way

  sergpolly started Dec 5, 2023 in Ideas

  

  

  6
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  🛠️

  dot calling state of the art

  enhancement

  sergpolly started Sep 7, 2018 in Technical details

  

  

  

  

  34
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  💬

  virtual4c assigning nan to point of view

  claudiarabu started May 23, 2023 in General

  

  

  8
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  🙏

  NumbaDeprecationWarning: The 'nopython' keyword argument was not supplied to the 'numba.jit' decorator.

  khsjh asked May 25, 2023 in Q&A · Unanswered

  

  

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  💬

  Potential bug in filling in NaNs in snipping

  Phlya started Mar 4, 2022 in General

  

  

  

  

  4
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  💡

  add min_dist_bad_bin argument for calculate_insulation_score

  gdolsten started Sep 1, 2021 in Ideas

  

  

  

  

  10
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  🙏

  P(s) curve and its derivative on individual chromosomes

  luciaalvarez95 asked Nov 25, 2021 in Q&A · Answered

  

  

  1
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  🛠️

  do we want to use decorators to "hide" compatibility checks?

  question

  sergpolly started Nov 16, 2021 in Technical details

  

  

  6
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  💡

  enable pileups in asymmetric coolers

  golobor started Nov 10, 2021 in Ideas

  

  

  1
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  💡

  what tools should accept blacklisted regions and in what form?

  sergpolly started May 5, 2020 in Ideas

  

  

  1
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  🛠️

  call_dots confounded by the duplicates along the tile borders

  bug

  sergpolly started Feb 5, 2019 in Technical details

  

  

  3
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  🛠️

  pickles break while "multiprocess"-ing dots

  sergpolly started Nov 24, 2018 in Technical details

  

  

  

  

  8
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  💬

  upcoming terminology issue: balanced.sum vs balanced.avg

  sergpolly started Mar 9, 2021 in General

  

  

  0
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  🛠️

  multiprocess requirement?

  folded started Feb 2, 2021 in Technical details

  

  

  1
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  💡

  a format+schema for storing computational artifacts

  golobor started Oct 9, 2020 in Ideas

  

  

  

  

  8
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  💬

  API/CLI approach and philosophy

  golobor started Sep 29, 2020 in General

  

  

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  💡

  how do we plot cooltools outputs? One idea: cool reports

  enhancement

  golobor started Jun 28, 2019 in Ideas

  

  

  

  

  5
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  💡

  how do we store cooltools' outputs? One idea: inside cooler files

  enhancement

  golobor started Sep 6, 2018 in Ideas

  

  

  

  

  5