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Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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@Reproducibility-FBB-MSU @open2c
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Pinned

  1. RedClib RedClib Public

    Red-C data processing

    Nextflow 13 2

  2. fontanka fontanka Public

    Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling fountains from cool Hi-C files.

    Python 4

  3. open2c/cooltools open2c/cooltools Public

    The tools for your .cool's

    Jupyter Notebook 121 50

  4. open2c/pairtools open2c/pairtools Public

    flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)

    Python 87 35

  5. guma44/GEOparse guma44/GEOparse Public

    Python library to access Gene Expression Omnibus Database (GEO)

    Jupyter Notebook 131 49

  6. avTAD avTAD Public

    Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).

    Python 10 2