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48 Open 204 Closed
48 Open 204 Closed
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Issues list

CAT_DB process has harcoded CAT subdirectory names bug Something isn't working
#611 opened Apr 18, 2024 by maxibor
1
Genome taxnomic classification with Sourmash enhancement New feature or request
#609 opened Apr 5, 2024 by prototaxites
3
Replace CheckM with CheckM2
#607 opened Mar 22, 2024 by CarsonJM
1
Improve documentation on the effects of completeness/contamination filters enhancement New feature or request
#606 opened Mar 22, 2024 by jfy133
add diamond support to mag WIP Work in progress
#604 opened Mar 19, 2024 by MatthewJM96
@MatthewJM96
Bins in CheckM summary do not match bins in bin depths summary bug Something isn't working
#603 opened Mar 17, 2024 by QingDAI0225
7
Error in executing PROKKA
#601 opened Mar 13, 2024 by anugos
4
NFCORE_MAG:MAG:GTDBTK:GTDBTK_CLASSIFYWF fails when all genomes classified by ANI screening step bug Something isn't working
#598 opened Feb 29, 2024 by cedwardson4
1
@maxibor
3
Centrifuge error - (ERR): mkfifo(/tmp/46.inpipe1) failed. bug Something isn't working
#597 opened Feb 29, 2024 by skrakau
@jfy133
3
Pipeline fails if only CONCOCT is turned on and other binners off bug Something isn't working
#590 opened Feb 16, 2024 by jfy133
Add documentation detailing phageome/virome analysis
#589 opened Feb 14, 2024 by CarsonJM
@CarsonJM
Expanded documentation for nf-core/mag use cases & downstream analysis docs enhancement New feature or request
#588 opened Feb 14, 2024 by CarsonJM
Add coverm/contig and coverm/genome as options for calculating read alignment metrics enhancement New feature or request
#587 opened Feb 14, 2024 by CarsonJM
@CarsonJM
Add StrainXpress assembler enhancement New feature or request
#580 opened Feb 8, 2024 by maxibor
Please make --binning_map_mode group and --ancient-dna compatible features enhancement New feature or request
#572 opened Feb 2, 2024 by winklerin
1
@maxibor
1
Is there any database we need to download? enhancement New feature or request
#554 opened Jan 2, 2024 by feixiang1209
12
CONCOCT - OpenBLAS Warning bug Something isn't working
#551 opened Dec 13, 2023 by Peter-Kille
3
Tiara is not included in bin_summary enhancement New feature or request
#544 opened Nov 21, 2023 by maxibor
@maxibor
1
Consider using collectFile to optimise aggregating of results of bin statistics steps enhancement New feature or request
#532 opened Nov 3, 2023 by jfy133
--postbinning_input to include only bins (no unassembled contigs) enhancement New feature or request
#528 opened Oct 16, 2023 by patriciatran
Investigate use of specifying size in groupTuple operations to improve efficiency enhancement New feature or request
#507 opened Sep 15, 2023 by jfy133
Remove inefficient basic file handling pipeline steps enhancement New feature or request
#505 opened Sep 7, 2023 by adamrtalbot
Develop full suite of tests for manual execution enhancement New feature or request
#501 opened Sep 1, 2023 by jfy133
5 of 15 tasks
@jfy133
3
Add option to specify the minimal contig length used for the pyDamage analysis enhancement New feature or request
#488 opened Aug 4, 2023 by alexhbnr
BUSCO batch mode enhancement New feature or request
#484 opened Aug 1, 2023 by prototaxites
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