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--postbinning_input to include only bins (no unassembled contigs) #528

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patriciatran opened this issue Oct 16, 2023 · 0 comments
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enhancement New feature or request

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@patriciatran
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patriciatran commented Oct 16, 2023

Description of feature

Following up on my Slack message (10/16/2023) and as per @jfy133 to post a feature request:

"It is possible to only annotate the refined or binned mags, and not the unbinned scaffolds, without skipping the Prokka annotation step altogether? I’ve been using the --postbinning_input refined_bins_only but it looks from the docu that either option also annotates the unbinned scaffolds. The unbinned scaffold annotation tends to take a really long time for me/and lots of disk space for some reason."

I am using v.2.5.0
Thank you! :)

@patriciatran patriciatran added the enhancement New feature or request label Oct 16, 2023
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