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66 Open 334 Closed
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Issues list

FileNotFoundError: [Errno 2] No such file or directory: 'ncov-tutorial/example-data.yaml' bug Something isn't working
#1108 opened May 10, 2024 by kiranpatil222
2
representation of a nuc conversion do not point a conversion on the genome bug Something isn't working
#1107 opened May 7, 2024 by huzuner
Dataset JSONs are not minified bug Something isn't working
#1098 opened Feb 15, 2024 by tsibley
Add 16 NSPs
#1081 opened Aug 21, 2023 by jameshadfield
tests/different-inputs.t is outdated and unused
#1061 opened Apr 18, 2023 by victorlin
1
can't install to native question Further information is requested
#1053 opened Mar 27, 2023 by shujiuli
4
dev: Document example accepted docker image formats for action enhancement New feature or request
#1051 opened Mar 17, 2023 by corneliusroemer
1
2
after skip_diagnostics: true modification. next strain fails bug Something isn't working
#1035 opened Dec 1, 2022 by Valentin-Bio-zz
3
Discussion: Do we still need the snp_clusters param for diagnostics rule? discussion-forum Issue mentioned or originated on discussion forum
#1017 opened Oct 17, 2022 by joverlee521
3
ENH: Simple reversion coloring to allow inspection of interesting/problematic parts of tree enhancement New feature or request
#1015 opened Oct 14, 2022 by corneliusroemer
@corneliusroemer
ENH: Reconstruct Nextclade Pango Lineage on internal nodes enhancement New feature or request
#1011 opened Oct 6, 2022 by corneliusroemer
feat: WDL overhaul for Dockstore and Terra enhancement New feature or request
#1005 opened Sep 26, 2022 by j23414
5 of 8 tasks
@j23414
ENH: Add S1 mutations, reversion count and other branch colorings enhancement New feature or request
#985 opened Jul 24, 2022 by corneliusroemer
@corneliusroemer
Delete pre-computed, downloaded input files on workflow completion on AWS Batch
#961 opened Jun 10, 2022 by tsibley
Memory resource constraints are not passed to IQ-TREE (via augur tree) bug Something isn't working
#949 opened May 17, 2022 by AdrianLimaG
1
3
annotate_metadata_with_index raises ValueError when dtypes don't match bug Something isn't working easy problem Requires less work than most issues
#948 opened May 13, 2022 by joverlee521
1
@huddlej
Visualise omicron recombinants
#915 opened Apr 13, 2022 by jameshadfield
2
Fetching Open workflow intermediate build assets over S3 gives a 403 error in a really simple setup bug Something isn't working
#909 opened Apr 10, 2022 by sacundim
3
Document color schemes enhancement New feature or request office-hours Issue mentioned during office hours
#901 opened Mar 29, 2022 by huddlej
1
Update configuration guide documentation Improvements or additions to documentation
#900 opened Mar 28, 2022 by victorlin
2 tasks
Questions from a custom Nextstrain builder
#888 opened Mar 13, 2022 by abattenhouse
3
subsampling_scheme min-date and max-date don't work bug Something isn't working
#887 opened Mar 13, 2022 by abattenhouse
1
BUG: Nucleotide and corresponding amino acid mutation occasionally on different branch bug Something isn't working hard problem Requires more work than most issues
#876 opened Mar 1, 2022 by corneliusroemer
3
Keep small number of BA.2 on the tree and not filtered by clock_filter enhancement New feature or request
#874 opened Feb 28, 2022 by danrlu
@corneliusroemer
2
UnicodeDecodeError in sanitize_metadata bug Something isn't working
#846 opened Jan 27, 2022 by jacaravas
6
ProTip! Follow long discussions with comments:>50.