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239 Open 736 Closed
239 Open 736 Closed
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Issues list

Funannotate compare
#1040 opened May 14, 2024 by danielabermeo8
CMD ERROR: diamond makedb --in /tmp/augustus.training.proteins.fa --db /tmp/aug_training.dmnd
#1039 opened May 10, 2024 by dingcaojin
1
Run InterProScan with funannotate-docker
#1037 opened Apr 29, 2024 by hanhan124
isoforms in gff3
#1036 opened Apr 29, 2024 by Nitin123-4
1
How to run funannotate setup local，configure Funannotate to use the locally downloaded database files instead of re-downloading them?
#1035 opened Apr 29, 2024 by zengqd
How to check the full-length genes from the final annotation.
#1034 opened Apr 26, 2024 by Nitin123-4
funannotate update ERROR
#1033 opened Apr 22, 2024 by ChuanzhengWei
Annotate command drops AttributeError: 'SimpleLocation' object has no attribute 'nofuzzy_start' error
#1032 opened Apr 22, 2024 by UmerFarooq17
2
TypeError: '>' not supported between instances of 'NoneType' and 'int'
#1031 opened Apr 19, 2024 by ad010902
How can I include the contig from the mitochondrial genome?
#1030 opened Apr 18, 2024 by Antonio-Sanpedro
GENMARK
#1029 opened Apr 17, 2024 by ad010902
2
Database is not properly configured, re-run funannotate setup, busco_seed_species
#1028 opened Apr 17, 2024 by ad010902
1
Funannotate sort (Version 1.8.17): error while sorting assembly/contigs
#1027 opened Apr 16, 2024 by jmartinsjrbr
EC_number, eggnog and COG terms not in annotate_results/annotations.txt
#1026 opened Apr 12, 2024 by slsy9965
1
funannotate update, kallisto error
#1025 opened Apr 10, 2024 by schraderL
1
Signalp v4.1 Installation
#1024 opened Apr 9, 2024 by mojiefei
Predicting genes for fungal metagenome assembly sequences
#1022 opened Apr 8, 2024 by mojiefei
How to solve the issule about "Found 1 bad contigs, where alphabet is less than 4 [this should not happen]"
#1021 opened Apr 7, 2024 by weiguanyue
Protein FASTA file not found, exiting - annotate_misc genome.protein.fa has no data
#1019 opened Apr 2, 2024 by stachyris
ERROR: gmes_petap.pl not installed ERROR: signalp not installed when they are
#1018 opened Apr 2, 2024 by joana-morais
1
Question: Dependency list is different for install versus documentation
#1013 opened Mar 19, 2024 by benyoung93
2
--busco_db and --busco_seed_species with RNA-seq
#1012 opened Mar 13, 2024 by enriquepola1996
2x Expected Gene Count
#1010 opened Mar 8, 2024 by jasongallant
10
When to use --busco_seed_species vs --augustus_species
#1009 opened Mar 7, 2024 by mperisin-lallemand
funannotate annotate --output folder empty
#1008 opened Mar 7, 2024 by YuLanSky
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