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This is more a query, and not a problem. Just wanted to get that out there right away 馃槄
I have used funannotate many times, and I am installing onto a new HPC for the new lab I am in (actually for fungal genomes now woooooooo !!!). Using mamba and conda install.
My install so far with mamba, and then set all the enviro variables, and also eggnog and genemark
do repeatmasker and repeatmodeler require manual mamba install etc etc within the environment now?
In previous documentation I think there was a nice section on installing phobius, signalp, etc etc. Has this been removed from the latest documentation ?
I have not troubleshot the augustus error but I should be able to fix that pretty easy i think (solved: augustus libgsl.so.25聽#754) - UPDATE, that didnt work for me so going to troubleshoot this further.
The text was updated successfully, but these errors were encountered:
If you pin augustus==3.5.0 that should hopefully fix the Augustus issue.
Yeah, the check is probably old code and not really in-line with the current version (apologies), I have no plans to fix or update though. Repeatmasker/modeler support has been dropped due to changes in the licensing agreement with the underlying database.
Hi @nextgenusfs
This is more a query, and not a problem. Just wanted to get that out there right away 馃槄
I have used funannotate many times, and I am installing onto a new HPC for the new lab I am in (actually for fungal genomes now woooooooo !!!). Using mamba and conda install.
My install so far with mamba, and then set all the enviro variables, and also eggnog and genemark
In the documents the dependency section, the external dependencies say this
But on my install, and running the check I only get the following for external dependencies (obvs I havent done signalp yet).
Questions
mamba install etc etc
within the environment now?phobius
,signalp
, etc etc. Has this been removed from the latest documentation ?The text was updated successfully, but these errors were encountered: