Skip to content

Issues: monarch-initiative/ontogpt

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

75 Open 91 Closed
75 Open 91 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

OpenAI base URL
#371 opened May 10, 2024 by syaikhipin
Transient errors with Translator endpoint
#370 opened May 7, 2024 by caufieldjh
1
Make missing API key errors more friendly
#368 opened Apr 29, 2024 by caufieldjh
Broken links in documentation
#367 opened Apr 23, 2024 by caufieldjh
Add caching for mapper
#363 opened Apr 12, 2024 by caufieldjh
Add extraction template for MIRO checklist
#362 opened Apr 4, 2024 by caufieldjh
Add grounding refiner option for SPIRES
#361 opened Apr 1, 2024 by caufieldjh
Followup on #353 - support including annotations in schemas to model KGX output
#356 opened Mar 26, 2024 by caufieldjh
1
Best way to apply on large quantities of documents?
#352 opened Mar 22, 2024 by serenalotreck
18
named_entities in output.txt contains all entities from previous documents when run on a directory
#351 opened Mar 20, 2024 by serenalotreck
1
Add extraction template for STORMS checklist template A request for a new or modified template
#348 opened Mar 19, 2024 by caufieldjh
Using value set expansion with non-OBO annotator leads to 404 error
#347 opened Mar 15, 2024 by caufieldjh
2
industrial-production-specific SPIRES
#340 opened Feb 27, 2024 by caufieldjh
2
Requesting model orca-2-7b raises llm.UnknownModelError
#337 opened Feb 26, 2024 by caufieldjh
5
Provide equivalencies for phenotype terms enhancement New feature or request
#334 opened Feb 13, 2024 by caufieldjh
6
Passthrough function to provide annotations to extraction output enhancement New feature or request
#333 opened Feb 12, 2024 by caufieldjh
Provide function to include provided annotations for extractions enhancement New feature or request
#332 opened Feb 12, 2024 by caufieldjh
Preprocess to remove brackets and other punctuation before attempting grounding enhancement New feature or request
#323 opened Feb 7, 2024 by caufieldjh
Provide initial or system-level instructions as part of extractions enhancement New feature or request
#321 opened Feb 6, 2024 by caufieldjh
Show original label from matched entities in extraction results enhancement New feature or request
#318 opened Feb 2, 2024 by caufieldjh
Add parser for delimited inputs and Excel enhancement New feature or request
#316 opened Feb 2, 2024 by caufieldjh
Add function to aggregate dataset metadata from multiple sources enhancement New feature or request
#314 opened Jan 31, 2024 by caufieldjh
1
Use arbitrary open-source llm enhancement New feature or request
#297 opened Dec 19, 2023 by TribeDH
@caufieldjh
3
Can we specify the range of annotator? enhancement New feature or request
#290 opened Dec 13, 2023 by kluo9
OntoGPT vs CurateGPT documentation Improvements or additions to documentation
#287 opened Dec 6, 2023 by ddooley
1
ProTip! Follow long discussions with comments:>50.