Skip to content

Issues: linnabrown/run_dbcan

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

34 Open 113 Closed
34 Open 113 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

fam-substrate-mapping.tsv missing bug Something isn't working good first issue Good for newcomers help wanted Extra attention is needed
#174 opened Apr 25, 2024 by cmkobel
@linnabrown
meaning of repeated substrates
#173 opened Apr 22, 2024 by CamiAgustini
4
How to summarize dbCAN3 results
#172 opened Apr 16, 2024 by NishatTamana51
@yinlabniu
1
No hits from DIAMOND
#170 opened Mar 15, 2024 by JosieMainwaring
@linnabrown
2
Dockerfile not using latest version? enhancement New feature or request
#169 opened Mar 11, 2024 by miraep8
@HaidYi
3
Visualizing dbcan gff output using Geneious enhancement New feature or request
#165 opened Feb 28, 2024 by SevanEsaian
4
finding %completeness of CGC in the microbial genome of interest <Theory question and suggestions>
#161 opened Feb 6, 2024 by Jigyasa3
2
Missing Header in dbcan-sub output
#160 opened Jan 29, 2024 by cristianrohr
10
can't find the dbcan_utils
#159 opened Jan 23, 2024 by WeiweiguoGuo
5
UnboundLocalError: cannot access local variable 'gene' where it is not associated with a value
#155 opened Jan 23, 2024 by tgurbich
3
dbsub.out matches multiple hits per Gene.ID. Do we keep all or the best hit?
#149 opened Jan 9, 2024 by Jigyasa3
2
output explanations
#148 opened Jan 8, 2024 by CamiAgustini
3
output explanations for "diamond.out", "hmmer.out","dtemp.out","overview.txt"
#138 opened Dec 6, 2023 by Jigyasa3
6
Different substrate annotations in dbCAN-PUL and run_dbcan4
#132 opened Oct 11, 2023 by Russel88
2
dbCAN-sub error bug Something isn't working
#129 opened Sep 7, 2023 by typhainepl
9
dbsub.out multiple lines for the same gene_id
#125 opened Aug 3, 2023 by ScaonE
1
protein sequence output file
#123 opened Jul 27, 2023 by graciegracekk
3
How to visualize output files from run_dbcan
#120 opened Jun 6, 2023 by nina-microbiology
Install package conflict Mac M1
#119 opened May 30, 2023 by Daironbio
1
dbcan_sub will create tons of subprocesses
#117 opened May 18, 2023 by chtsai0105
8
PUL annotation question
#116 opened Apr 22, 2023 by LuckyFeiX
2
There is NO need to add run_dbcan in docker run command
#114 opened Mar 24, 2023 by bladrome
2
CGC-JSON error bug Something isn't working
#111 opened Mar 13, 2023 by joeyclancy
8
How to harmonize output
#106 opened Sep 28, 2022 by SilasK
6
Roadmap
#104 opened Sep 23, 2022 by SilasK
7
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.