Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to visualize output files from run_dbcan #120

Open
nina-microbiology opened this issue Jun 6, 2023 · 0 comments
Open

How to visualize output files from run_dbcan #120

nina-microbiology opened this issue Jun 6, 2023 · 0 comments

Comments

@nina-microbiology
Copy link

Hello, I am new to github and dbcan. I followed the scripts under run_dbcan4. I initially had errors, but it was because I did not activate conda prior to running the database install. After rerunning with conda activated, I can see the output folder and files when I ran the nucleotide example:

run_dbcan EscheriaColiK12MG1655.fna prok --out_dir output_EscheriaColiK12MG1655

I don't know how to visualize the output files with .out and .gff extensions. Can anyone help with this? Is there another step I need to do or another script I need to run to visualize each output file (dbsub.out, diamond.out, dtemp.out, hmmer.out, prodigal.gff, uniInput)? Thanks.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant