v0.1.3

Fixed

• Default Primers parameter txt to tsv.

v0.1.2

Added

• Fastcat stats plots in tabs for pass and failed samples.
• Version and parameter tables.
• Per barcode number of reads.
• Insert sequences output.
• MSA of inserted sequences.

Fixed

• Order samples lexicographically.

Changed

• Use Canu for assembly instead of Flye.
• Trim input sequences.

v0.1.1

Fixed

• Corrected number of input channels for host_reference process
• Remove duplicate output files
• Help message parameters reflect config

v0.1.0

Added

• Plannotate for plasmid annotation and visualization.
• Per sample pass or fail error message in CSV.
• Plasmid annotation feature table output CSV.

Changed

• Updated project to use latest practices from wf-template.

Fixed

• Incorrect specification of conda environment file in Nextflow config.

v0.0.4

Added

• Fix report naming to be consistent with other projects

v0.0.2

Added

• --no-reconcile flag for a simpler and quicker overall pipeline

Changed

• simplified assembly outputs, to only emit the final polished assembly

v0.0.1

First release