v0.2.3

Changed

• Change params.threads to task.cpus

v0.2.2

Changed

• Fastqingress metadata map.
• Sample status now collected from tuples.

v0.2.1

Changed

• Plannotate read/write database requirement fix
• approx_size_sheet param instead of sample_sheet
• Set out_dir option type to ensure output is written to correct directory on Windows

v0.2.0

Changed

• Better help text on CLI.
• Fix issue with S3 file inputs.

Updated

• Plannotate to version v1.2.0

v0.1.9

Added

• Param for fast option in Canu assembly

v0.1.8

Changed

• New docs format

v0.1.7

Fixed

• Sample sheet encoding
• Min max barcodes integer types

Changed

• Moved bioinformatics from report to seperate processes

Added

• Ability to define approx_size of sequence per sample in sample_sheet
• Insert length to table
• Output annotation bed files per sample

v0.1.6

Changed

• Update schema for epi2melabs compatibility

Fixed

• Make use of the canu_useGrid parameter

v0.1.5

Added

• Singularity profile to config.
• Ping telemetry file.
• Handle more fastq input directory structures.

Fixed

• db_directory description and explained in README
• db_directory param updated to match s3 folder name

Changed

• Use downsampled samples for polish assembly step.

v0.1.4

Added

• Option to add suffix to HTML report name.
• Error message if fastq input file evaluates to null.