Update nextflow.config to include aws config

nextflow.config

@@ -48,10 +48,6 @@ profiles {
             shell = ['/bin/bash', '-euo', 'pipefail']
         }
     }
-
-    local {
-        process.executor = 'local'
-    }
 
     // profile using conda environments rather than docker
     // containers
@@ -69,6 +65,23 @@ profiles {
              cacheDir = ""
         }
     }
+
+    awsbatch {
+        process {
+            executor = 'awsbatch'
+            queue = "${params.aws_queue}"
+            memory = '8G'
+            container = "${params.aws_image_prefix}-wf-clone-validation:${params.wfversion}"
+            shell = ['/bin/bash', '-euo', 'pipefail']
+        }
+    }
+    aws.region = 'eu-west-1'
+    aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
+
+    // local profile for simplified development testing
+    local {
+        process.executor = 'local'
+    }
 }