v0.2.13

Changed

• Updated to Oxford Nanopore Technologies PLC. Public License.

Fixed

• Amended raw QC stats to show data before filtering by assembly_size parameter.

v0.2.12

Fixed

• Bug where the workflow wouldn't run properly when --approx_size_sheet was used.

Changed

• Now uses new fastq_ingress implementation.

v0.2.11

Fixed

• Provide medaka model for each assembly to fix bug.

v0.2.10

Fixed

• Replace spaces with tabs in medaka model TSV to fix bug.

v0.2.9

Fixed

• Medaka models added to container

v0.2.8

Changed

• --basecall_cfg is now used to determine suitable Medaka model, alternatively provide the name of a model with --medaka_model to override automatic selection.

v0.2.7

Changed

• Updated description in manifest

v0.2.6

Removed

• -profile conda is no longer supported, users should use -profile standard (Docker) or -profile singularity instead

Added

• nextflow run epi2me-labs/wf-clone-validation --version will now print the workflow version number and exit

v0.2.5

Fixed

• Filter host step not outputting approx_size.

Updated

• Use groovy script to ping after workflow has run.

v0.2.4

Added

• Error handling for no annotations found for an assembly.
• Windows parameter so Canu can run on windows

Fixed

• Plannotate dictionary keys can contain any characters.
• Sanitize fastq intermittent null object error.