pango designation v1.27

Release notes

3475c5b - Cornelius Roemer, 2024-03-09 17:19:03 +0100 : Designate JN.1.1.6 (S:F456L on JN.1.1 polytomy)
2fba814 - Cornelius Roemer, 2024-03-09 18:37:08 +0100 : Designate JN.1.26 (S:R346T, after C26894T, USA)
4d2ed46 - Cornelius Roemer, 2024-03-09 18:38:47 +0100 : Designate JN.1.27 (S:M153I, after C26894T, C25680T, USA)
46718c5 - Cornelius Roemer, 2024-03-09 18:47:19 +0100 : Designate JN.1.4.4 (S:R346T)
ce0782a - Cornelius Roemer, 2024-03-09 18:50:06 +0100 : Designate JN.1.8.2 (S:R346T)
fd116e9 - Cornelius Roemer, 2024-03-09 18:54:47 +0100 : Designate JN.1.28 (C24034T, A29700G, East Asia/Oceania)
e312db5 - Cornelius Roemer, 2024-03-09 18:57:07 +0100 : Designate JN.1.1.7 (S:S31F)
b586709 - Cornelius Roemer, 2024-03-09 19:03:22 +0100 : Remove non-1243F seqs from JN.1.24
82aa62d - Cornelius Roemer, 2024-03-09 19:08:56 +0100 : Designate JN.1.29 (ORF1a:T3224A, after C2644T, Brazil)
72ac258 - Cornelius Roemer, 2024-03-14 09:03:50 +0100 : Designate JN.1.4.5 (ORF8:S103L)
f144a9b - Cornelius Roemer, 2024-03-14 10:15:40 +0100 : Designate JN.1.18.1 (S:T250N)
e0fc8aa - Cornelius Roemer, 2024-03-14 10:20:23 +0100 : Designate JN.1.30 (G21255T)
0092a7f - Cornelius Roemer, 2024-03-14 10:34:40 +0100 : Fix JN.1.4 designations
c83781e - Cornelius Roemer, 2024-03-14 10:40:34 +0100 : Designate JN.1.31 (ORF3a:V13L, C19186T)
b316ca1 - Cornelius Roemer, 2024-03-14 10:56:06 +0100 : Designate JN.1.16.1 (S:R346T)
f7585ae - Cornelius Roemer, 2024-03-14 11:00:32 +0100 : Designate KS.1 (JN.1.13.1.1, S:F456L)
58f350c - Cornelius Roemer, 2024-03-14 11:06:39 +0100 : Designate JN.1.4.6 (S:T572I, after T18453C)
ecf36b9 - Cornelius Roemer, 2024-03-14 11:25:42 +0100 : Designate JN.1.32 (S:T572I, directly on JN.1 polytomy)
1bf723e - Memorable, 2024-03-14 21:40:11 +0800 : Update lineage_notes.txt
e554b7f - Angie Hinrichs, 2024-03-14 15:52:00 -0700 : Merge pull request #2519 from Memorablea/patch-2
fa7c71d - Angie Hinrichs, 2024-03-15 10:21:39 -0700 : Removing name that matches many different sequences.
8efd327 - Memorable, 2024-03-17 13:19:51 +0800 : Update lineage_notes.txt
cb172ab - Cornelius Roemer, 2024-03-17 15:22:03 +0100 : Designate GE.1.2.2 (S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya)
01f1978 - Cornelius Roemer, 2024-03-17 15:31:14 +0100 : Designate KT.1 (GE.1.2.1.1, S:K77R, US/UK)
7b3ad94 - Cornelius Roemer, 2024-03-17 15:32:17 +0100 : Designate KT.1.1 (C683T, G15957A, USA)
4cdf840 - Cornelius Roemer, 2024-03-17 15:36:09 +0100 : Designate KT.1.2 (ORF1b:N2328S, C583T)
47c066b - Cornelius Roemer, 2024-03-17 16:08:05 +0100 : Designate KP.3 (S:Q493E)
98da9b2 - Cornelius Roemer, 2024-03-17 16:16:27 +0100 : Desigante JN.1.33 (S:A67V, G2782T, C5512T, China)
947fc66 - Cornelius Roemer, 2024-03-17 16:17:50 +0100 : Designate JN.1.34 (S:S704L)
efb6b9f - Cornelius Roemer, 2024-03-17 16:19:42 +0100 : Designate JN.1.35 (S:S680Y, after T18471C, Australia/New Zealand)
99bec76 - Cornelius Roemer, 2024-03-17 16:24:07 +0100 : Designate JN.1.36 (S:Q677H, after A29086T)
76391fc - Federico Gueli, 2024-03-17 17:50:32 +0100 : Update lineage_notes.txt
be72bd5 - Memorable, 2024-03-19 13:26:55 +0800 : Update lineage_notes.txt
1da2694 - Cornelius Roemer, 2024-03-19 14:01:53 +0100 : Designate KP.2.1 (S:Q1201K)
92ae63a - Cornelius Roemer, 2024-03-19 14:03:44 +0100 : Designate KP.2.2 (S:F59L, S:K1266R)
e03042f - Cornelius Roemer, 2024-03-19 15:47:09 +0100 : Designate JN.1.30.1 (S:R346T, after T7789C, India)
f0368ef - Angie Hinrichs, 2024-03-19 15:58:20 -0700 : Merge pull request #2524 from Memorablea/patch-2
48ed0b8 - Angie Hinrichs, 2024-03-19 15:59:47 -0700 : Merge pull request #2526 from FedeGueli/patch-30
429fbed - Angie Hinrichs, 2024-03-19 16:16:57 -0700 : Merge pull request #2527 from Memorablea/patch-3
617afbf - Cornelius Roemer, 2024-03-20 17:00:32 +0100 : Designate JQ.2.1 (S:L455S, South Africa)
b450700 - Cornelius Roemer, 2024-03-25 07:32:02 +0100 : Designate XDD.1.1.1 (S:R346T)
1cda06a - Cornelius Roemer, 2024-03-25 07:51:38 +0100 : Designate KU.1 (JN.1.30.1.1, S:K182Q) and KU.2 (S:F456L)
388d260 - Cornelius Roemer, 2024-03-25 07:55:12 +0100 : Designate JN.1.18.2 (S:F59S)
dc9f270 - Cornelius Roemer, 2024-03-25 08:11:17 +0100 : Designate JN.1.36.1 (S:S680F, South Korea)
b62fdd6 - Cornelius Roemer, 2024-03-25 08:13:13 +0100 : Designate KV.1 (S:S680F)
febf823 - Cornelius Roemer, 2024-03-25 08:15:01 +0100 : Designate JN.1.37 (S:S680F, on polytomy)
d2c609b - Cornelius Roemer, 2024-03-25 08:20:23 +0100 : Designate JN.1.28.1 (ORF1a:P1640L, C19545T, C24370T) and KW.1 (JN.1.28.1.1, S:T572I, Australia)
4c84077 - Cornelius Roemer, 2024-03-25 08:25:21 +0100 : Desigante JN.1.38 (ORF1b:R1736K, USA)
c193ce6 - Cornelius Roemer, 2024-03-25 08:27:30 +0100 : Desigante JN.1.39 (G2782T)
b515b3a - Cornelius Roemer, 2024-03-25 08:33:16 +0100 : Designate JN.1.40 (S:S31P, Mexico)
36cdaa3 - Cornelius Roemer, 2024-03-25 08:37:35 +0100 : Designate JN.1.41 (S:S1252F, on A29086T, USA)
bf6fa8b - Cornelius Roemer, 2024-03-25 08:39:31 +0100 : Designate JN.1.42 (C5581A, South America)
06e2b57 - Cornelius Roemer, 2024-03-25 08:43:34 +0100 : Designate JN.1.43 (A25237G), JN.1.43.1 (C19488T, C29218T, Brazil)
72653ed - Cornelius Roemer, 2024-03-25 08:50:27 +0100 : Designate KP.1.1.1 (S:K182N)
8aa6137 - Cornelius Roemer, 2024-03-25 09:00:54 +0100 : Designate JN.1.44 (ORF6:P57L)
2f4b63c - Federico Gueli, 2024-03-25 13:17:21 +0100 : Update lineage_notes.txt
0c04882 - Cornelius Roemer, 2024-03-26 17:39:36 +0100 : Designate 30 extra JN.1.23
b521ee2 - Cornelius Roemer, 2024-03-26 17:45:04 +0100 : Designate XDU (Recombinant lineage of BA.2.86.1, BA.2.86.1 (breakpoint between 11957-12729), Japan,)
2290342 - Cornelius Roemer, 2024-03-26 17:55:33 +0100 : Designate XDP.1 (S:E1092D, after ORF1a:L397P, ORF1a:H388Y)
0f6d6e1 - Cornelius Roemer, 2024-03-26 18:39:58 +0100 : Designate JN.2.2.1 (S:N487D, Netherlands)
bbeaa01 - Federico Gueli, 2024-03-27 07:34:53 +0100 : Update lineage_notes.txt
c542214 - Federico Gueli, 2024-03-27 10:04:35 +0100 : Update lineage_notes.txt
9e97eb9 - Cornelius Roemer, 2024-03-29 11:22:55 +0100 : Designate JN.1.8.3 (C13821T, C14925T)
5bddf8f - Cornelius Roemer, 2024-03-29 11:26:09 +0100 : Designate KY.1 (JN.1.8.2.1, ORF1a:N3774D, Nigeria)
1cb2994 - Cornelius Roemer, 2024-03-29 11:32:53 +0100 : Designate JN.14 (C29614T, S:S680F, Thailand/Japan)
f68f404 - Cornelius Roemer, 2024-03-29 11:35:59 +0100 : Designate JN.1.45 (G18756T)
0fb7bc5 - Memorable, 2024-03-30 13:44:57 +0800 : Update lineage_notes.txt
b9b6ec7 - Cornelius Roemer, 2024-04-02 14:05:49 +0200 : Designate XDV (XDE, JN.1, XDE, JN.1 (breakpoints between 19326-21608, 27915-28297, 28958-29535), from #2402) with 13 seqs)
30cec9b - Cornelius Roemer, 2024-04-02 14:07:37 +0200 : Designate XDV.1 (S:F456L (T22930A), on C11572T branch)
7d580c8 - Cornelius Roemer, 2024-04-02 14:34:17 +0200 : Designate JN.1.42.1 ( S:F59S)
d96b1ea - Cornelius Roemer, 2024-04-02 14:37:42 +0200 : Designate JN.1.46 (ORF1a:L3116F, T4885C)
82d8358 - Cornelius Roemer, 2024-04-02 14:41:29 +0200 : Designate JN.1.4.7 (ORF3a:G18D)
4a1ca73 - Cornelius Roemer, 2024-04-02 17:12:56 +0200 : Designate KV.2 (JN.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA)
71451fa - Angie Hinrichs, 2024-04-02 18:46:44 -0700 : Merge pull request #2533 from FedeGueli/patch-32
07df22c - Angie Hinrichs, 2024-04-02 18:51:32 -0700 : Merge pull request #2535 from FedeGueli/patch-33
81da870 - Cornelius Roemer, 2024-04-03 17:49:04 +0200 : Designate KW.1.1 (S:F456L, ORF1b:R2009K, Australia/Japan)
1343104 - Cornelius Roemer, 2024-04-04 08:50:33 +0200 : Designate KZ.1 (JN.1.1.6 with ORF1b:V1092F), KZ.1.1 (S:R346T), KZ.1.1.1 (S:T572I)
c0fd244 - Cornelius Roemer, 2024-04-04 09:23:31 +0200 : Designate JN.1.7.3 (S:R346T)
1b26492 - Federico Gueli, 2024-04-04 16:05:52 +0200 : Update lineage_notes.txt
cd77b44 - Yat-sing Ng, 2024-04-05 21:40:51 +0800 : Update lineage_notes.txt
0ba3daf - Yat-sing Ng, 2024-04-05 21:43:08 +0800 : Update alias_key.json
e25cc5d - Yat-sing Ng, 2024-04-05 22:07:14 +0800 : Update lineage_notes.txt
d6b3019 - Angie Hinrichs, 2024-04-05 09:00:45 -0700 : Merge pull request #2537 from FedeGueli/patch-31
053a58c - Angie Hinrichs, 2024-04-05 09:01:36 -0700 : Merge pull request #2541 from Memorablea/patch-2
6246629 - Angie Hinrichs, 2024-04-05 09:02:00 -0700 : Merge pull request #2550 from FedeGueli/patch-34
859d2e1 - Angie Hinrichs, 2024-04-05 09:08:04 -0700 : Merge pull request #2551 from Over-There-Is/patch-7
fe1b485 - Yat-sing Ng, 2024-04-06 00:10:55 +0800 : Update lineage_notes.txt
771f02c - Angie Hinrichs, 2024-04-05 09:24:03 -0700 : Merge pull request #2552 from Over-There-Is/patch-8
452cb0a - aviczhl2, 2024-04-06 21:10:59 +0800 : add_1_from_main_31_from_lineage_proposal
158973c - Angie Hinrichs, 2024-04-12 16:09:06 -0700 : Merge pull request #2553 from aviczhl2/master
8fbd0bc - Cornelius Roemer, 2024-04-15 17:31:11 +0200 : Designate KP.4 (JN.1.11.1.4, C6070T, India), KP.4.1 (S:R346T, C19884T), KP.4.2 (S:R346T, S:K187R)
0f3e1f8 - Cornelius Roemer, 2024-04-15 17:35:53 +0200 : Designate KP.1.2 (S:T572I)
b0a0b07 - Cornelius Roemer, 2024-04-15 17:38:25 +0200 : Designate KP.2.3 (S:H146Q, ORF3a:K67N)
9fcb3e6 - Cornelius Roemer, 2024-04-15 18:00:18 +0200 : Designate JN.1.47 (C8074T, C7594T), JN.1.47.1 (S:S221L, USA/Mexico), JN.1.47.2 ( S:T572I, S:R683Q, USA)
52f3337 - Cornelius Roemer, 2024-04-15 18:04:28 +0200 : Designate JN.1.16.2 (C4777T), LA.1 (JN.1.16.2.1, S:R346T), LA.2 (S:R346I)
0c19ec3 - Cornelius Roemer, 2024-04-15 18:09:10 +0200 : Broaden JN.1.1.3 to not require ORF1b:H2388Y
b51c68c - Cornelius Roemer, 2024-04-15 18:12:35 +0200 : Designate JN.1.9.2 (S:R346T), LB.1 (JN.1.9.2.1, S:F456L)
be7e605 - Cornelius Roemer, 2024-04-15 18:15:49 +0200 : Designate JN.1.7.4 ( S:F456L (T22928C))
2a82248 - Cornelius Roemer, 2024-04-15 18:17:37 +0200 : Designate JN.1.24 (S:R346T)
dffbf6a - Cornelius Roemer, 2024-04-15 18:20:07 +0200 : Designat...

pango designation v1.26

Release notes

a4a5ba0 - Federico Gueli, 2024-02-04 19:28:32 +0100 : Update lineage_notes.txt
a2c9a60 - Cornelius Roemer, 2024-02-12 13:37:09 +0100 : Designate JN.1.4.3 (S:T572I) from #2487
48ee76d - Cornelius Roemer, 2024-02-12 13:41:40 +0100 : Designate XDT (recombinant of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485)
dc148ec - Cornelius Roemer, 2024-02-12 13:51:58 +0100 : Designate HK.13.2.1 (S:T250I, N:T379I, Greece, from #2480)
2fcf851 - Cornelius Roemer, 2024-02-12 13:56:32 +0100 : Designate KN.1 (GK.1.10.1.1, S:Y200C, Brazil) and KN.1.1 (S:N450D)
7651872 - Cornelius Roemer, 2024-02-12 13:59:11 +0100 : Designate JN.1.1.4 (S:V1264L, from #2476)
0bbbe00 - Cornelius Roemer, 2024-02-20 16:54:27 +0100 : Designate JN.1.23 (S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488)
4241e54 - Cornelius Roemer, 2024-02-22 19:30:19 +0100 : Designate KP.1 (JN.1.11.1.1, S:K1086R)
46a79f3 - aviczhl2, 2024-02-25 12:21:38 +0800 : add_3_autoref_from_main_and_10_from_lineage_proposals
569c1af - Cornelius Roemer, 2024-03-01 09:25:58 +0100 : Designate JN.1.7.1 (B.1.1.529.2.86.1.1.7.1, S:R346K, England)
7125b18 - Cornelius Roemer, 2024-03-01 09:32:17 +0100 : Designate JN.1.7.2 (ORF1b:C1563F, Americas)
a528c79 - Cornelius Roemer, 2024-03-01 16:22:25 +0100 : Designate KQ.1 (JN.1.4.3.1, S:R346T, USA)
1845c66 - Federico Gueli, 2024-03-01 17:01:12 +0100 : Update lineage_notes.txt
19cf1e5 - Cornelius Roemer, 2024-03-01 17:11:29 +0100 : Designate JN.1.13.1 (S:R346T, S:F59S, USA)
d262c30 - Cornelius Roemer, 2024-03-01 17:14:37 +0100 : Designate JN.1.1.5 (S:R346T)
77ac735 - Yat-sing Ng, 2024-03-03 15:09:04 +0800 : Update lineage_notes.txt
1cce500 - Cornelius Roemer, 2024-03-04 15:14:20 +0100 : Designate KR.1 (JN.1.1.5.1, S:F456L, after C28498T)
a29effe - Cornelius Roemer, 2024-03-04 15:24:40 +0100 : Designate KP.1.1 (JN.1.11.1.1.1, S:R346T)
5e932aa - Cornelius Roemer, 2024-03-04 15:51:54 +0100 : Designate KP.2 (JN.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy)
92b5fbd - Cornelius Roemer, 2024-03-04 15:56:33 +0100 : Designate JN.1.24 (S:C1243F, USA)
3f22231 - Cornelius Roemer, 2024-03-04 16:01:11 +0100 : Designate XDK.1 (S:R346T, G11596A)
2817bce - Cornelius Roemer, 2024-03-04 16:08:16 +0100 : Designate JN.1.25 (C706T, A7708T, India) and JN.1.25.1 (S:R346T, India)
62759f0 - Cornelius Roemer, 2024-03-04 19:49:57 +0100 : Remove mistakenly committed .swp
788e5fe - Cornelius Roemer, 2024-03-04 19:50:38 +0100 : Remove mistakenly committed .command_log
ab76d4a - Cornelius Roemer, 2024-03-04 19:51:44 +0100 : Designate XDQ.1 (S:A475V, Japan)
c93fc79 - Cornelius Roemer, 2024-03-05 13:18:09 +0100 : Designate JQ.2 (S:R346T, G2944A, South Africa, from #2505)
a40d20b - Angie Hinrichs, 2024-03-05 10:10:47 -0800 : Merge pull request #2486 from FedeGueli/patch-28
aa82251 - Angie Hinrichs, 2024-03-05 10:18:22 -0800 : Merge pull request #2499 from aviczhl2/master
eb3d385 - Angie Hinrichs, 2024-03-05 10:19:13 -0800 : Merge pull request #2507 from FedeGueli/patch-29
fae598a - Angie Hinrichs, 2024-03-05 10:21:49 -0800 : Merge pull request #2509 from Over-There-Is/patch-6
1f458d4 - Cornelius Roemer, 2024-03-06 15:25:55 +0100 : Designate JN.13 (A14397G) and JN.13.1 (S:A475V) [Editor's note: lineage_notes.txt says JN.1.13 is "S:A1087S, after C26894T,C25680T, USA, from #2464" and JN.13.1 adds "S:R346T, S:F59S" and that is consistent with seqs in lineages.csv]

pango designation v1.25

Release notes

5b7b299 - Angie Hinrichs, 2024-01-18 11:04:12 -0800 : Remove 2339 names that map to multiple sequences in the UCSC UShER tree that are on different lineage branches.
f743d97 - Cornelius Roemer, 2024-01-21 22:18:51 +0100 : Designate JN.11 (S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303)
54f733f - Cornelius Roemer, 2024-01-21 23:58:44 +0100 : Designate JN.1.12 (S:F456V, ORF7a:A8T)
80a788e - Cornelius Roemer, 2024-01-22 00:04:13 +0100 : Designate JN.12 (S:F456V, ORF1a:A498G)
a6e6ad3 - Cornelius Roemer, 2024-01-22 00:42:37 +0100 : Designate JN.1.11.1 (S:F456L, India)
acc65d1 - Angie Hinrichs, 2024-01-22 17:22:03 -0800 : Merge pull request #2466 from AngieHinrichs/removeDupNames
cb7e158 - Cornelius Roemer, 2024-01-31 16:43:00 +0100 : Designate KM.1 (XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal)
68ca039 - Cornelius Roemer, 2024-02-01 16:21:06 +0100 : Designate BA.2.87 (C18744T, no C9866T) and BA.2.87.1 (saltation with 15+ spike AA mutations, South Africa, from #2484)
ce9f9d0 - Cornelius Roemer, 2024-02-01 23:17:49 +0100 : Designate XDQ (ecombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 223605 and 24377), from #2481
f39ed9e - Cornelius Roemer, 2024-02-01 23:23:34 +0100 : Designate GK.1.10.1 (S:A475V, C29668T, Brazil, from #2479)
3292a20 - Cornelius Roemer, 2024-02-01 23:30:25 +0100 : Designate XDR (Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477)
d68c064 - Cornelius Roemer, 2024-02-01 23:47:03 +0100 : Designate JN.1.13 (S:A1087S, USA) and JN.1.14 (S:R346S, USA)
1406788 - Cornelius Roemer, 2024-02-01 23:49:29 +0100 : Designate JN.1.15 (S:A688V)
c843c38 - Cornelius Roemer, 2024-02-01 23:51:10 +0100 : Designate JN.1.4.1 (S:E654V, Ireland)
7058743 - Cornelius Roemer, 2024-02-01 23:53:03 +0100 : Designate JN.1.2.1 (S:H1101Y, Ireland)
d2eec4d - Cornelius Roemer, 2024-02-01 23:55:25 +0100 : Designate JN.1.16 (S:F456L)
5438c32 - Cornelius Roemer, 2024-02-01 23:58:09 +0100 : Designate JN.1.17 (S:A222V, USA)
271f9e0 - Cornelius Roemer, 2024-02-02 16:35:10 +0100 : Designate JN.1.4.2 (S:N185D, USA, from #2462)
253610a - Cornelius Roemer, 2024-02-02 18:47:23 +0100 : Correct designations for BA.2.87 after discussion with @AngieHinrichs
425fe95 - Cornelius Roemer, 2024-02-04 14:55:23 +0100 : Designate JN.1.18 (S:R346T, directly on JN.1 polytomy)
0b504b4 - Cornelius Roemer, 2024-02-04 15:07:19 +0100 : Designate JN.1.19 (ORF8:I71V)
93188fd - Cornelius Roemer, 2024-02-04 15:14:41 +0100 : Designate JN.1.20 (S:S31F, directly on JN.1 polytomy)
ead98f6 - Cornelius Roemer, 2024-02-04 15:57:03 +0100 : Designate XDS (recombinant of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506)
cd1621e - Cornelius Roemer, 2024-02-04 16:04:11 +0100 : Designate JN.1.9.1 (S:T572I, ORF1a:A3143V)
761aec8 - Cornelius Roemer, 2024-02-04 16:06:16 +0100 : Designate JN.1.21 (S:H1058Y)
a90c8e3 - Cornelius Roemer, 2024-02-04 16:08:17 +0100 : Designate JN.1.22 (ORF1a:S505F, C13019T)
4a389ef - Angie Hinrichs, 2024-02-05 16:08:36 -0800 : Removing Slovakia/RNA/ names because they have many matches.

pango designation v1.24

Release notes

fb96d0a - Cornelius Roemer, 2023-10-12 23:14:36 +0200 : Designate BA.2.86.2 (ORF7a:E22D, South Africa/Botswana) with 25 seqs
bea249a - Cornelius Roemer, 2023-10-12 23:21:29 +0200 : Designate BA.2.86.3 (C222T, C1960T, T12775C, South Africa) with 25 seqs
6c3cbc3 - Cornelius Roemer, 2023-10-12 23:26:59 +0200 : Designate JQ.1 (BA.2.86.3.1, S:T95I, Denmark/France/South Africa) with 13 seqs
62ee71f - Cornelius Roemer, 2023-10-12 23:32:07 +0200 : Designate JN.2 (BA.2.86.1.2 with ORF1a:Y621C, Europe/North America) with 100 seqs
8424ad2 - Cornelius Roemer, 2023-10-12 23:34:17 +0200 : Designate JN.3 (BA.2.86.1.3, ORF1a:T2087I, Europe) with 60 seqs
b14b69a - Cornelius Roemer, 2023-10-12 23:50:19 +0200 : Designate GK.2.4 (S:K356T, USA-NY) with 15 seqs
f1b2dab - Cornelius Roemer, 2023-10-12 23:54:38 +0200 : Designate HK.12 (S:K356T, China/Singapore) with 12 seqs
4f9712c - Cornelius Roemer, 2023-10-12 23:58:51 +0200 : Designate EG.6.1.2 (S:V705I, Israel) with 80 seqs
c3904ca - Cornelius Roemer, 2023-10-13 00:09:30 +0200 : Designate HV.1.1 (S:K444T, on ORF1a:T4083M branch, USA) with 15 seqs
471889e - Cornelius Roemer, 2023-10-13 00:14:55 +0200 : Designate HV.1.2 (S:S514F, on ORF1a:T4083M branch, USA) and HV.1.3 (S:493L, USA)
ab3b625 - Cornelius Roemer, 2023-10-13 00:16:22 +0200 : Designate HV.1.4 (S:A1078S, USA) with 50 seqs
49cdcb4 - Cornelius Roemer, 2023-10-13 00:23:33 +0200 : Designate HK.13 (S:L455F (G22927C), China, 250 seqs) and HK.13.1 (C13378T, A24604G)
b123561 - Cornelius Roemer, 2023-10-13 00:25:33 +0200 : Designate HK.13.2 (S:F797L, S:D1153H) with 30 seqs
af79499 - Cornelius Roemer, 2023-10-13 00:29:02 +0200 : Designate HK.1.1 (S:456L (G22927T), China) with 40 seqs
2ee937c - Cornelius Roemer, 2023-10-13 00:31:29 +0200 : Designate HK.1.2 (S:455F (G22927C), S:T307I, China/New Zealand) with 50 seqs
c7550b1 - Cornelius Roemer, 2023-10-13 00:35:46 +0200 : Designate HK.14 (S:L455F (G22927C), on C11779T branch, China) with 80 seqs
04f540f - Cornelius Roemer, 2023-10-13 00:43:46 +0200 : Designate HK.15 (S:A262T, on C11779T branch) with 150 seqs
5283757 - Cornelius Roemer, 2023-10-13 00:47:41 +0200 : Designate EG.5.1.11 (S:K182Q, Indonesia) with 20 seqs
6ca5c26 - Cornelius Roemer, 2023-10-13 00:50:52 +0200 : JR.1 (EG.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia) with 10 seqs
bd9a2f7 - Cornelius Roemer, 2023-10-13 00:52:38 +0200 : Designate JR.1.1 (S:L455F (G22927C)) with 10 seqs
dde47c8 - Cornelius Roemer, 2023-10-13 01:01:35 +0200 : Designate GA.2.1 (XBB.1.17.1.2.1, S:E554K) and GA.2.1.1 ( S:N450D, S:K478R)
561040b - Cornelius Roemer, 2023-10-13 01:05:11 +0200 : Designate GA.4.2 (S:K558N, S:G1124S, England/Italy) with 4 seqs
516ee4a - Cornelius Roemer, 2023-10-13 01:06:35 +0200 : Designate GA.4.3 (S:F186L, S:L585F, Greece/Romania) with 10 seqs
6106107 - Cornelius Roemer, 2023-10-13 01:08:51 +0200 : Designate GA.4.1.2 (S:T572I, England) with 10 seqs
521220b - Cornelius Roemer, 2023-10-13 01:12:33 +0200 : Designat HK.16 (N:P67S, S:A684V, S:V1264L) with 50 seqs
7362fc8 - Cornelius Roemer, 2023-10-13 01:15:01 +0200 : Designate HK.17 (S:S494P, China) with 50 seqs
1bf9c67 - Cornelius Roemer, 2023-10-13 01:18:07 +0200 : Designate HK.18 (S:L452R) with 30 seqs
d077888 - Cornelius Roemer, 2023-10-13 01:21:02 +0200 : Designate HK.19 (S:F157L) with 70 seqs
2fe3c52 - Cornelius Roemer, 2023-10-13 01:30:46 +0200 : Designate XBB.2.3.15 (ORF1a:I4308V)
8d36dfd - Cornelius Roemer, 2023-10-13 01:33:22 +0200 : Designate JS.1 (XBB.2.3.15.1, S:S256T) with 150 seqs
e5fbf04 - Cornelius Roemer, 2023-10-13 01:34:16 +0200 : Desingate JS.2 (S:T323I) with 100 seqs
7614167 - Cornelius Roemer, 2023-10-13 01:44:07 +0200 : Designate XCQ (Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289) with 80 seqs
3acc442 - Cornelius Roemer, 2023-10-13 01:49:47 +0200 : Desingate XBB.2.3.16 (S:K478N, USA) with 15 seqs
45e216e - Cornelius Roemer, 2023-10-13 01:50:39 +0200 : Designate XBB.2.3.17 (S:N450D, USA) with 15 seqs
a4d823d - Cornelius Roemer, 2023-10-13 02:04:55 +0200 : Designate JD.2.1 (S:E554K, Brazil) with 20 seqs
a5fbef6 - Cornelius Roemer, 2023-10-13 02:24:49 +0200 : Designate GW.5.2 (N:T379I) and GW.5.3 (T20310C, C28519T)
7dcb5ae - Cornelius Roemer, 2023-10-13 02:28:03 +0200 : Designate GW.5.3.1 (S:A475V, S:G184A) with 10 seqs
2626654 - Cornelius Roemer, 2023-10-13 15:05:57 +0200 : Designate HW.1.2 (G15957A, Australia) and HW.1.3 (N:T391I, Australia)
0f50930 - Cornelius Roemer, 2023-10-13 15:32:39 +0200 : Designate XBC.1.6.5, XBC.1.6.6, JT.1 (XBC.1.6.6.1, S:V445A)
17d3581 - Cornelius Roemer, 2023-10-13 15:51:37 +0200 : Withdraw HK.1.1 as smaller than thought (only 6 sequences have 257V and G22927T)
cfe2ed8 - Cornelius Roemer, 2023-10-13 15:59:13 +0200 : Designate extra BA.2.86
032d300 - Memorable, 2023-10-13 22:23:41 +0800 : Update lineage_notes.txt forBA.86.2 and JN.2
bf14f63 - Cornelius Roemer, 2023-10-13 22:12:26 +0200 : Designate GL.2 (XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong) with 10 seqs
9088232 - Cornelius Roemer, 2023-10-13 22:15:47 +0200 : Designate GL.3 (XAY.1.1.1.3, ORF1a:P1640S, Germany) with 300 seqs
ba10206 - Cornelius Roemer, 2023-10-13 22:17:17 +0200 : Add extra XAY.1.1.1 designations
550f9b2 - Angie Hinrichs, 2023-10-13 13:34:39 -0700 : Merge pull request #2306 from ciscorucinski/fix/workflow/issue-milestone-collector
b06d726 - Angie Hinrichs, 2023-10-13 13:41:56 -0700 : Merge pull request #2324 from Memorablea/patch-1
1a5955d - Cornelius Roemer, 2023-10-13 23:05:28 +0200 : Designate XCR (recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323)
3223321 - Cornelius Roemer, 2023-10-15 11:43:54 +0200 : Designate GK.5 (S:G181V, Brazil) and GK.5.1 (S:E180K)
6fe25ac - Cornelius Roemer, 2023-10-15 11:45:31 +0200 : Designate GK.6 (XBB.1.5.70.6, S:N556K, S:E583A) with 50 seqs
61604b2 - Cornelius Roemer, 2023-10-15 11:46:52 +0200 : Designate GK.7 (XBB.1.5.70.7, N:D3G) with 70 seqs
af7f5c4 - Cornelius Roemer, 2023-10-15 11:48:51 +0200 : Designate GK.8 (XBB.1.5.70.8, ORF:E55Q, Brazil) with 50 seqs
1c2b15f - Cornelius Roemer, 2023-10-15 11:50:52 +0200 : Designate GK.8.1 (XBB.1.5.70.8.1, S:N185I, S:A475V) with 15 seqs
d6326f6 - Cornelius Roemer, 2023-10-15 11:54:08 +0200 : Designate GK.9 (XBB.1.5.70.9, S:T307S, Brazil) with 10 seqs
51bb3dd - Cornelius Roemer, 2023-10-15 12:01:03 +0200 : Designate GK.10 (XBB.1.5.70.10, S:E554G, Brazil) with 15 seqs
92bde5e - Cornelius Roemer, 2023-10-15 12:02:13 +0200 : Designate GK.11 (XBB.1.5.70.11, S:T883I, Brazil) with 8 seqs
71796df - Cornelius Roemer, 2023-10-15 12:09:03 +0200 : Designate GK.1.5 (XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil) with 15 seqs
ab068f9 - Cornelius Roemer, 2023-10-15 12:11:07 +0200 : Designate GK.1.6 (XBB.1.5.70.1.6, ORF3a:V50I, Colombia) with 150 seqs
8e45078 - Cornelius Roemer, 2023-10-15 12:12:27 +0200 : Designate GK.1.6.1 (XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia) with 15 seqs
ceff314 - Cornelius Roemer, 2023-10-15 12:23:42 +0200 : Add extra GK.1.2 designations (especially some without T16974C) and remove erroneously added #2093 from notes
2e02c0f - Cornelius Roemer, 2023-10-15 12:26:58 +0200 : Designate GK.1.2.1 (XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia) with 12 seqs
441b454 - Cornelius Roemer, 2023-10-15 12:29:11 +0200 : Designate GK.1.7 (S:F186L, T11695C, Europe)
fa557e4 - Cornelius Roemer, 2023-10-15 12:35:50 +0200 : Designate GK.1.8 (S:E554K, S:A475V, Brazil) with 20 seqs
22a348a - Cornelius Roemer, 2023-10-15 12:45:18 +0200 : Designate GK.12 (XBB.1.5.70.12, S:T76I, S:N450D, Brazil) with 5 seqs
686748e - Cornelius Roemer, 2023-10-15 12:52:19 +0200 : Designate GK.1.9 (C17010T, USA)
26ababf - Cornelius Roemer, 2023-10-15 13:02:12 +0200 : Designate XBB.1.16.25 (ORF1a:K510E, C16611T, A29221G) with 300 seqs
cc16c73 - Cornelius Roemer, 2023-10-15 13:04:07 +0200 : Designate XCS (Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311) with 30 seqs
c58b4a4 - Cornelius Roemer, 2023-10-15 13:15:00 +0200 : Designate GK.1.1.1 (C28432T, donor of XCR) with 190 seqs
bd0e486 - Cornelius Roemer, 2023-10-15 13:22:27 +0200 : Designate FU.1.1 (XBB.1.16.1.1.1, S:K1266R) with 160 seqs
24d57cc - Cornelius Roemer, 2023-10-15 13:25:09 +0200 : Designate FU.1.1.1 (XBB.1.16.1.1.1.1, S:N74S, USA) with 70 seqs
b4e8ab1 - Cornelius Roemer, 2023-10-15 14:33:52 +0200 : Designate HG.3 (XBB.2.3.8.3, S:S255F, South Korea) with 35 seqs
fc51cdc - Cornelius Roemer, 2023-10-15 14:35:55 +0200 : Designate HG.1.1 (S:A1190S, South Korea) with 40 seqs
987a9be - Cornelius Roemer, 2023-10-15 14:40:24 +0200 : Designate XBB.2.3.18 (S:F456L (T22930A), S:N450D, S:1231A, India) with 8 seqs
70e727f - Cornelius Roemer, 2023-10-15 14:44:02 +0200 : Designate GS.6 (XBB.2.3.11.6, S:A845S, Wales) with 70 seqs
1293572 - Cornelius Roemer, 2023-10-15 14:46:23 +0200 : Designate GS.4.1.1 (XBB.2.3.11.4.1.1, S:P561S, France) with 50 seqs
4a0edbe - Cornelius Roemer, 2023-10-15 14:51:19 +0200 : Designate GS.7 (XBB.2.3.11.7, ORF1a:L204I, C14925T) with 150 seqs
0470496 - Cornelius Roemer, 2023-10-15 14:52:14 +0200 : Designate GS.7.1 (XBB.2.3.11.7.1, S:E180Q, Tunisia) with 18 seqs
32ea609 - Cornelius Roemer, 2023-10-15 14:56:04 +0200 : Designate GS.8 (XBB.2.3.11.8, ORF3a:I179V, Vietnam) with 150 seqs
7804cb5 - Cornelius Roemer, 2023-10-15 15:01:05 +0200 : Designate GJ.6 (XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India) with 15 seqs
d6cfeab - Cornelius Roemer, 2023-10-15 15:02:43 +0200 : Designate GJ.7 (XBB.2.3.3.7, S:E183K, Australia/NewZealand) with 37 seqs
604740d - Cornelius Roemer, 2023-10-15 15:12:18 +0200 : Designate JU.1 (XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia) with 12 seqs
3ab2f9c - Cornelius Roemer, 2023-10-15 15:16:11 +0200 : Designate JV.1 (DV.7.1.2.1, S:G485R, France) with 50 seqs
777ef39 - Cornelius Roemer, 2023-10-15 15:17:13 +0...

pango designation v1.23

Release notes

52c2083 - aviczhl2, 2023-08-19 01:21:00 +0800 : add 1 ref from main page and 3 refs from sars-cov-2-variants/lineage-proposals
31def30 - Angie Hinrichs, 2023-08-21 10:40:50 -0700 : Merge pull request #2199 from aviczhl2/master
1c8d6e4 - Cornelius Roemer, 2023-08-22 01:37:08 +0200 : Designate FW.1.1 (XBB.1.28.1.1.1, S:N148T, UK) with 50 seqs
5c181b8 - Cornelius Roemer, 2023-08-22 01:45:19 +0200 : Designate JC.1 (XBB.1.41.1.1, S:K77R, Japan/Hawaii) and XBB.1.41.2 (S:S494P)
7b6a943 - Cornelius Roemer, 2023-08-22 01:57:26 +0200 : Designate GA.4.1 (XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar) with 5 seqs
1b2a93d - Cornelius Roemer, 2023-08-22 02:02:06 +0200 : Designate GE.1.1 (XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore) with 30 seqs
6e850c3 - Cornelius Roemer, 2023-08-22 02:03:44 +0200 : Designate GE.1.2 (XBB.2.3.10.1.2, S:N148T, Kenya) with 40 seqs
688cb33 - Cornelius Roemer, 2023-08-22 02:23:06 +0200 : Designate XBB.1.5.102 (C6896T, C14085T, C19488T, Brazil-Amazonas) with 1300 seqs
9953957 - Cornelius Roemer, 2023-08-22 02:25:53 +0200 : Designate JD.1 (XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2203) with 60 seqs
2d25a8d - Federico Gueli, 2023-08-22 09:51:54 +0200 : Update lineage_notes.txt
7b1683c - Angie Hinrichs, 2023-08-22 11:22:47 -0700 : Merge pull request #2204 from FedeGueli/master-2
328785b - Cornelius Roemer, 2023-08-23 23:55:56 +0200 : Designate FL.1.5.2 (S:N481K, S:H681R, England/France/Denmark/US) with 8 seqs
5140e40 - Cornelius Roemer, 2023-08-24 00:20:55 +0200 : Designate JB.2.1 (XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa) with 10 seqs
24b7e71 - Cornelius Roemer, 2023-08-24 00:28:47 +0200 : Designate HK.6 (EG.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA) with 100 seqs
b2febbe - Cornelius Roemer, 2023-08-24 00:41:57 +0200 : Designate GS.2 (XBB.2.3.11.2, S:T470N, Singapore/Brunei) with 20 seqs
63bc309 - Cornelius Roemer, 2023-08-24 00:45:49 +0200 : Designate GS.3 (XBB.2.3.11.3, S:R190S, USA/UK) with 20 seqs
3760d6c - Cornelius Roemer, 2023-08-24 00:49:55 +0200 : Designate GS.4 (XBB.2.3.11.4, M:A104V, ORF1a:A104V, France) with 100 seqs
5dde128 - Cornelius Roemer, 2023-08-24 00:51:12 +0200 : Designate GS.4.1 (XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France) with 35 seqs
cffd0e3 - Cornelius Roemer, 2023-08-24 00:56:17 +0200 : Designate GE.1.3 (XBB.2.3.10.1.3, S:T732I) with 100 seqs
b1d0adc - Federico Gueli, 2023-08-24 00:57:09 +0200 : Update lineage_notes.txt
e58c620 - Cornelius Roemer, 2023-08-24 01:03:11 +0200 : Designate JE.1 (GJ.1.2.1.1, S:478R, Singapore/SouthKorea/US) with 7 seqs
238f48b - Cornelius Roemer, 2023-08-24 01:06:46 +0200 : Designate HG.2 (XBB.2.3.8.2, S:T259I, South Korea/USA) with 60 seqs
7e6a661 - Cornelius Roemer, 2023-08-24 01:31:55 +0200 : Designate JF.1 (XBB.1.16.6.1, S:L455F, USA) with 15 seqs
609bb64 - Cornelius Roemer, 2023-08-24 01:35:34 +0200 : Designate JF.2 (XBB.1.16.6.2, S:Q675H, USA/Wales) with 40 seqs
56f6198 - Cornelius Roemer, 2023-08-24 01:40:52 +0200 : Designate GK.1.4 (S:478R, S:98F, Brazil) with 5 seqs
d3ec617 - Cornelius Roemer, 2023-08-24 01:56:34 +0200 : Designate XCH (Recombinant of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173)
0f61ca7 - Cornelius Roemer, 2023-08-24 02:04:16 +0200 : Designate GK.2.1 (ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C) with 100 seqs
8c1a514 - Cornelius Roemer, 2023-08-24 02:06:25 +0200 : Designate extra HK.3
2d2cdd6 - Cornelius Roemer, 2023-08-24 02:07:13 +0200 : Designate HK.3.1 (EG.5.1.1.3 with S:F157L, China) with 25 seqs
5a316cf - Federico Gueli, 2023-08-24 15:10:20 +0200 : Update lineage_notes.txt
18567dd - Angie Hinrichs, 2023-08-24 08:46:44 -0700 : Merge pull request #2211 from FedeGueli/master-4
ab4243e - Angie Hinrichs, 2023-08-24 09:10:50 -0700 : Merge pull request #2209 from FedeGueli/master-3
e843dc7 - Angie Hinrichs, 2023-08-24 11:05:19 -0700 : Typo fix: new lineage XCH was misspelled XGH in lineages.csv.
60ff1a4 - Cornelius Roemer, 2023-08-24 22:28:26 +0200 : Designate XCJ (Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609)
56e3ad0 - Cornelius Roemer, 2023-08-24 22:31:18 +0200 : Designate GM.3 (XBB.2.3.6.3, ORF1a:R4017K) and GM.3.1 (S:N388K, Japan) with 250/60 seqs
a86f9c6 - Cornelius Roemer, 2023-08-25 00:16:54 +0200 : Designate HC.2 (XBB.1.5.44.2, S:F157L, Canada) with 20 seqs
0b118f7 - Cornelius Roemer, 2023-08-25 00:19:46 +0200 : Designate EG.5.1.7 (XBB.1.9.2.5.1.7, S:K278N) with 19 seqs
0b4d963 - Cornelius Roemer, 2023-08-25 21:02:26 +0200 : Designate JD.1.1 (XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain) with 30 seqs
93d2313 - Cornelius Roemer, 2023-08-25 21:04:04 +0200 : Designate JD.1.2 (XBB.1.5.102.1.2, S:P1162S, Brazil) with 40 seqs
168e64b - Cornelius Roemer, 2023-08-30 19:30:33 +0200 : Designate XBB.1.5.103 (S:F456L (T22928C), S:180/184del, S:N185D, Argentina) with 50 seqs
1cc7ca9 - Cornelius Roemer, 2023-08-30 22:43:17 +0200 : Designate XCH.1 (S:T573I) with 30 seqs
98c5e92 - Cornelius Roemer, 2023-08-30 23:27:36 +0200 : Designate JG.1 (EG.5.1.3.1, S:T732I, France) with 40 seqs
e28cf09 - Cornelius Roemer, 2023-08-30 23:30:01 +0200 : Designate HK.7 (EG.5.1.1.7, S:N148T, China) 40 seqs
94fbed4 - Cornelius Roemer, 2023-08-30 23:33:03 +0200 : Designate EG.2 (S:K304N, Indonesia/Japan) with 40 seqs
ca37eb2 - Cornelius Roemer, 2023-08-30 23:34:16 +0200 : Designate EG.2.3 (S:I742V, Indonesia/Singapore) with 100 seqs
1d90913 - Cornelius Roemer, 2023-08-30 23:35:52 +0200 : Designate EG.2.4 (S:K356T, ORF1a:G2265D, Singapore) with 15 seqs
b375fca - Cornelius Roemer, 2023-08-30 23:38:03 +0200 : Designate EG.2.5 (S:Q675H, Indonesia) with 40 seqs
c7e7c28 - Cornelius Roemer, 2023-08-31 13:38:03 +0200 : Designate EG.13 (ORF1a:K789N) with 1000 seqs
1118b71 - Cornelius Roemer, 2023-08-31 13:41:33 +0200 : Designate FL.4.8 (S:478R, Indonesia) with 190 seqs
c2c2963 - Cornelius Roemer, 2023-08-31 14:06:02 +0200 : Designate FL.4.9 (S:S254P, ORF3a:D173G) with 200 seqs
1403582 - Cornelius Roemer, 2023-08-31 14:07:30 +0200 : Designate FL.4.10 (S:V1129I, China) with 150 seqs
713fcd7 - Cornelius Roemer, 2023-08-31 14:23:59 +0200 : Designate FY.3.2 (ORF1a:E3764G, China, from #2000) and FY.3.3 (ORF3a:V48F, China)
ebc32aa - Cornelius Roemer, 2023-08-31 14:39:52 +0200 : Designate JH.1 (BQ.1.2.2.1, West Africa, S:K182E, S:P251L, S:486A, S:S494P, S:E554K, from #2068) with 13 seqs
9043731 - Cornelius Roemer, 2023-08-31 14:43:24 +0200 : Designate JH.2 (BQ.1.2.2.2, S:A484T, S:V486A, USA/Canada/Finland, from #2068) with 4 seqs
1fbcb3b - Cornelius Roemer, 2023-08-31 14:58:44 +0200 : Designate FL.2.6 (S:N641K, from #2180) with 70 seqs
4749974 - Cornelius Roemer, 2023-08-31 15:09:15 +0200 : Designate XCK (FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215) with 9 seqs
e363047 - Federico Gueli, 2023-08-31 15:21:29 +0200 : Update lineage_notes.txt
a397154 - Cornelius Roemer, 2023-08-31 21:51:06 +0200 : Designate FL.10.2 (S:K356T, S:T523N, Canada/USA) with 30 seqs
2351b67 - Angie Hinrichs, 2023-08-31 16:44:27 -0700 : Merge pull request #2235 from FedeGueli/patch-15
40b2d67 - Cornelius Roemer, 2023-09-01 13:20:22 +0200 : Designate XCL (Recombinant lineage of XBB/GK.2.1, Europe, from #2227) with 40 seqs
8f78e43 - Cornelius Roemer, 2023-09-01 13:35:21 +0200 : Designate FL.30 (S:484K, Greece, from #2206) with 27 seqs
c520d0c - Cornelius Roemer, 2023-09-01 13:58:38 +0200 : Designate GW.1.1 (XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore) with 13 seqs
f75470e - Cornelius Roemer, 2023-09-01 14:00:57 +0200 : Designate GK.2.2 (XBB.1.5.70.2.2, S:E554D) with 19 seqs
5e035b4 - Cornelius Roemer, 2023-09-01 14:06:09 +0200 : Designate HF.1.1 (S:H1101Y, on N:A35T branch, South Korea/USA/Canada) with 70 seqs
154fb44 - Cornelius Roemer, 2023-09-01 14:08:57 +0200 : Designate HF.1.2 (XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA) with 30 seqs
9e08418 - Cornelius Roemer, 2023-09-01 14:10:45 +0200 : Designate XBB.1.5.104 (S:K304Q, USA) with 380 seqs
9f68787 - Cornelius Roemer, 2023-09-01 14:19:15 +0200 : Designate XBB.1.16.23 (S:K304Q, India/USA/Japan/Singapore) with 40 seqs
f9cd663 - Cornelius Roemer, 2023-09-01 14:23:10 +0200 : Designate JH.1 (XBB.1.5.3.1, S:K304Q, USA) with 200 seqs
49aae7b - Cornelius Roemer, 2023-09-01 14:26:33 +0200 : Designate XBB.1.5.105 (S:K304N, USA/Europe) with 70 seqs
9527e15 - Cornelius Roemer, 2023-09-01 14:35:50 +0200 : Designate HK.8 (EG.5.1.1.8, S:L455F, on C11779T branch) with 40 seqs
f271b57 - Cornelius Roemer, 2023-09-01 14:37:25 +0200 : Designate HK.9 (EG.5.1.1.9, S:R190K, on C11779T branch, England) with 60 seqs
36e3fb0 - Cornelius Roemer, 2023-09-01 14:41:13 +0200 : Designate JJ.1 (XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan) with 27 seqs
f655671 - Cornelius Roemer, 2023-09-01 14:44:46 +0200 : Designate HK.10 (EG.5.1.1.10, S:L455F, on C19983T branch, China/England/Denmark) with 19 seqs
1a77042 - Cornelius Roemer, 2023-09-01 23:36:02 +0200 : fix: Deduplicate JH aliasing by making XBB.1.5.3.1 alias to JK
acf9ccc - Cornelius Roemer, 2023-09-01 23:44:04 +0200 : Designate HS.1.1 (XBB.1.5.95.1.1, S:F456L, USA, from #2237) with 50 seqs
5636325 - HynnSpylor, 2023-09-02 05:49:04 +0800 : Update lineage_notes.txt (#2240)
7d172c1 - Federico Gueli, 2023-09-03 00:06:15 +0200 : Update lineage_notes.txt
b440995 - Yat-sing Ng, 2023-09-03 07:22:11 +0800 : Update lineage_notes.txt
2e0850a - Federico Gueli, 2023-09-03 11:54:15 +0200 : Update lineage_notes.txt
5d759d3 - aviczhl2, 2023-09-03 23:01:28 +0800 : Add 4 autoref from main page and 31 from lineage-proposals
59903c3 - Cornelius Roemer, 2023-09-04 14:40:39 +0200 : Designate HK.11 (S:G184S, China/England/SouthKorea, from #2255) with 50 seqs
4fa5b5f - Cornelius Roemer, 2023-09-04 14:52:59 +0200 : Designate JG.2 (EG.5.1.3.2, S:G75V, Europe, from #2249) with 50 seqs
68ae5bf - Cornelius Roemer, 2023-09-04 15:03:29 +0200 : Design...

pango designation v1.22

Release notes

ed6f4b2 - Cornelius Roemer, 2023-06-26 12:30:46 +0200 : Designate DV.7.1 (S:L455F, S:F456L, Spain/Austria, lineage-proposals#135) with 14 seqs
ca84b09 - Cornelius Roemer, 2023-06-26 12:35:59 +0200 : Designate GW.1 (XBB.1.19.1.1, ORF1a:D264N, N:M322V, China) with 140 seqs
23e89d6 - Cornelius Roemer, 2023-06-26 12:37:30 +0200 : Designate GW.2 (S:D936G, USA) with 100 seqs
83a1f8a - Cornelius Roemer, 2023-06-26 19:51:32 +0200 : Designate GY.1 (XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066) with 80 seqs
995d8c2 - Cornelius Roemer, 2023-06-26 20:12:17 +0200 : Designate GY.2 (XBB.1.16.2.2, S:T883I) with 25 seqs
664200c - Cornelius Roemer, 2023-06-26 20:15:56 +0200 : Designate BN.1.2.7 (N:N8S, C16332T, Taiwan, from #1923) with 80 seqs
939990f - Cornelius Roemer, 2023-06-26 20:31:09 +0200 : Designate GJ.1.2 (XBB.2.3.3.1.2, ORF1b:V1110I, from #2059) with 200 seqs
7fed7cc - Cornelius Roemer, 2023-06-28 13:33:09 +0200 : Designate FL.13.2 (S:K356T, China, from #2073) with 30 seqs
20e6497 - Cornelius Roemer, 2023-06-28 13:44:19 +0200 : Designate FL.18 (ORF1a:T2007I) with 800 seqs
c07ae4b - Cornelius Roemer, 2023-06-28 15:55:05 +0200 : Designate FL.18.1 (N:T166I, A27507C, from #2019) with 200 seqs
23cfb26 - Cornelius Roemer, 2023-06-28 16:00:13 +0200 : Designate FL.18.1.1 (S:Y200C, S:478R, Australia/Indonesia) with 20 seqs
8e3e5bb - Cornelius Roemer, 2023-06-28 18:44:32 +0200 : Designate XBB.1.5.88 (C2299T, South Africa) with 200 seqs
d535b36 - Cornelius Roemer, 2023-06-28 18:51:47 +0200 : Designate GZ.1 (XBB.2.3.4.1, S:F186L, India-GJ) with 80 seqs
b45620c - Cornelius Roemer, 2023-06-28 19:30:14 +0200 : Designate HA.1 (XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada) and HA.2 (S:P521S, Brazil) with 50 seqs each
d973087 - Cornelius Roemer, 2023-06-28 19:37:49 +0200 : Designate XBB.1.5.89 (S:478R, S:554A, Canada/Italy/France) with 40 seqs
3e1a8b0 - Cornelius Roemer, 2023-06-28 21:22:02 +0200 : Add extra XBB.1.16.6 designations
aaee4fd - Cornelius Roemer, 2023-06-28 21:23:34 +0200 : Add extra XBB.1.16.9 designations
3c00ba8 - Cornelius Roemer, 2023-06-28 21:24:49 +0200 : Add extra FL.1.5.1 designations
5bb0fae - Cornelius Roemer, 2023-06-28 21:33:51 +0200 : Designate HB.1 (XBB.1.34.2.1, S:F456L (22928C), US/China/Canada, from sars-cov-2-variants/lineage-proposals#217) with 10 seqs
7f13742 - Cornelius Roemer, 2023-06-28 21:41:40 +0200 : Designate EG.2.1 (S:F456L (T22930A), S:V327I, Indonesia/US/Australia) with 5 seqs
c65ee84 - Cornelius Roemer, 2023-06-28 21:48:49 +0200 : Designate HC.1 (XBB.1.5.44.1, S:P631S, USA) with 30 seqs
971191a - Cornelius Roemer, 2023-06-28 21:53:40 +0200 : Designate FL.19 (XBB.1.9.1.18, T2377C) with 500 seqs
80a1671 - Cornelius Roemer, 2023-06-28 22:02:14 +0200 : Designate FU.3 (XBB.1.16.1.3, C11665T, India) with 190 seqs
4dd681b - Cornelius Roemer, 2023-06-28 23:08:12 +0200 : Designate BQ.1.1.79 (S:Q613H, C1594T, C16362T, T24079C, Greece) with 300 seqs
21b34b0 - Cornelius Roemer, 2023-06-29 23:29:20 +0200 : Designate FL.20 (S:F456L (22928C), S:Q52H, Spain, from #2072) with 20 seqs
1a8596e - Cornelius Roemer, 2023-06-29 23:50:07 +0200 : Designate XBB.1.31.1 (S:E553K, Indonesia) with 19 seqs
0dfab29 - Cornelius Roemer, 2023-06-29 23:53:31 +0200 : Designate FL.1.7 (S:478R, S:C1235F, Indonesia) with 30 seqs
33d7bbe - Cornelius Roemer, 2023-06-29 23:58:08 +0200 : Designate FL.1.1.1 (S:A688S, Australia/Mauritius) with 30 seqs
40d135d - Cornelius Roemer, 2023-06-30 00:08:51 +0200 : Designate FL.4.4 (ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia) with 70 seqs
fd41be6 - Cornelius Roemer, 2023-06-30 00:11:54 +0200 : Designate FL.4.5 (ORF8:S67F, ORF1a:D1228G, C23635T) with 600 seqs
02d6085 - Cornelius Roemer, 2023-06-30 00:13:33 +0200 : Designate FL.4.6 (T5098C, C13965T, Australia/China) with 400 seqs
ec23e4a - Cornelius Roemer, 2023-06-30 00:18:40 +0200 : Designate FL.4.1.1 (S:K478R, ORF1a:I2286T, Indonesia/Australia) with 20 seqs
80dc246 - Cornelius Roemer, 2023-06-30 00:20:40 +0200 : Designate FL.4.7 (S:L452R, Singapore) with 20 seqs
6e6ced5 - Cornelius Roemer, 2023-06-30 11:56:49 +0200 : Designate GY.3 (S:M177I, Thailand) with 30 seqs
a76d1de - Cornelius Roemer, 2023-06-30 11:58:02 +0200 : Designate GY.2.1 (S:S255F, South Korea) with 20 seqs
1a630a8 - Cornelius Roemer, 2023-06-30 12:00:44 +0200 : Designate XBB.1.16.12 (S:Q52H, South Korea) with 60 seqs
c411680 - Cornelius Roemer, 2023-06-30 12:02:45 +0200 : Designate XBB.1.16.13 (ORF1a:G519S, ORF1a:G1101D, India) with 300 seqs
51bc6d4 - Cornelius Roemer, 2023-06-30 12:06:48 +0200 : Designate FL.21 (XBB.1.9.1.21, A10564T, South Korea/China) with 300 seqs
00647cb - Cornelius Roemer, 2023-06-30 12:08:34 +0200 : Designate FL.5.1 (S:M177T) with 100 seqs
2504a6d - Cornelius Roemer, 2023-06-30 12:10:57 +0200 : Designate EG.1.4.1 (S:P217L, South Korea) with 80 seqs
317f95f - Cornelius Roemer, 2023-06-30 12:13:20 +0200 : Designate GD.2 (S:L212S, Philippines) with 100 seqs
1809d78 - Cornelius Roemer, 2023-06-30 12:14:42 +0200 : Designate GD.3 (S:F59L, Russia) with 80 seqs
019df7f - Cornelius Roemer, 2023-06-30 12:16:39 +0200 : Designate EG.1.5 (S:S98F, Europe) with 90 seqs
8492ad8 - Cornelius Roemer, 2023-06-30 12:18:32 +0200 : Designate EG.8 (ORF1a:S2303F, Europe) with 130 seqs
73d070d - Cornelius Roemer, 2023-06-30 12:25:53 +0200 : Designate FL.22 (ORF1b:I1416V, T24184C) with 300 seqs
ea90ffe - Cornelius Roemer, 2023-06-30 12:27:24 +0200 : Designate FL.23 (ORF1b:V1132I, Philippines) with 200 seqs
3645109 - Cornelius Roemer, 2023-06-30 12:31:12 +0200 : Designate FY.6 (T2935C, ORF1a:A591V, France) with 180 seqs
01cf28d - Cornelius Roemer, 2023-07-09 15:56:14 +0200 : Designate CM.8.1.5 (S:K150E, S:Y248H, N:A155V, Philippines) with 20 seqs
662800b - Cornelius Roemer, 2023-07-09 16:14:16 +0200 : Designate CK.1.1.1. (S:E654K, G6742T, C8782T, Japan) and CK.1.3 (Mexico, S:F157L, S:G181V)
daeb496 - Cornelius Roemer, 2023-07-09 16:16:58 +0200 : Designate CK.1.4 (C25614T, C10228T, C25824T, C27741T) with 1k seqs
b5aedd0 - Cornelius Roemer, 2023-07-09 16:19:08 +0200 : Designate CK.1.5 (C9118T, C15951T, ORF1a:M3733V, on C25614T branch) with 500 seqs
c65d4df - Cornelius Roemer, 2023-07-09 16:27:05 +0200 : Designate FR.1.4 (A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China) with 100 seqs
9f92dc5 - Cornelius Roemer, 2023-07-09 16:30:26 +0200 : Designate GQ.1.1 (S:G213E, New Zealand) with 20 seqs
049c18c - Cornelius Roemer, 2023-07-09 16:34:28 +0200 : Designate FK.1.3.1 (S:E583D, Australia) and FK.1.3.2 (C9391T, T13596C, Australia/Japan)
ba63b28 - Cornelius Roemer, 2023-07-09 16:37:43 +0200 : Designate FK.1.5 (G5155A, C12439T, Australia/New Zealand) with 200 seqs
5cd7ffd - Cornelius Roemer, 2023-07-09 16:40:42 +0200 : Designate CJ.1.3.1 (S:R214S, ORF1a:G3578S, South Korea/Japan) with 40 seqs
f0582e1 - Cornelius Roemer, 2023-07-09 16:42:24 +0200 : Designate CJ.1.3.2 (S:D936H, South Korea) with 200 seqs
9e3c876 - Cornelius Roemer, 2023-07-09 19:07:57 +0200 : Designate EU.1.1.3 (S:F157L, Europe) with 60 seqs
c8cadb0 - Cornelius Roemer, 2023-07-09 19:10:44 +0200 : Designate FL.24 (S:Q613H, S:A688V) with 80 seqs
a2a5587 - Cornelius Roemer, 2023-07-09 19:14:23 +0200 : Add extra EG.7 designations
5648ff2 - Cornelius Roemer, 2023-07-10 11:43:01 +0200 : Designate XBB.1.16.14 (S:L452Q, after A11782G, India/France/Canada) with 25 seqs
6a905e3 - Cornelius Roemer, 2023-07-10 12:02:10 +0200 : Designate XBB.1.5.90 (S:P621S, ORF1ab:S6713L, Belgium/France) with 200 seqs
bf7f18a - Cornelius Roemer, 2023-07-10 12:04:27 +0200 : Designate XBB.1.5.91 (S:P621S, USA) with 400 seqs
cbbfabf - Cornelius Roemer, 2023-07-10 12:09:21 +0200 : Designate FL.25 (S:E554K, USA/England) with 120 seqs
83a6944 - Cornelius Roemer, 2023-07-10 12:11:49 +0200 : Designate FL.2.4 (ORF8:S67F, China) with 300 seqs
8a47ca9 - Cornelius Roemer, 2023-07-10 12:15:10 +0200 : Designate XCF.1 (S:F157L, USA) with 10 seqs
9a507d8 - Cornelius Roemer, 2023-07-10 12:16:20 +0200 : Designate XCF.2 (S:S929I, Canada) with 15 seqs
3115358 - Cornelius Roemer, 2023-07-10 12:20:14 +0200 : Designate FL.26 (C22264T) with 300 seqs
c2eaf5e - Cornelius Roemer, 2023-07-10 12:21:11 +0200 : Designate FL.26.1 (S:493L, Sweden) with 40 seqs
5780e06 - Cornelius Roemer, 2023-07-10 12:44:21 +0200 : Designate GK.2 (XBB.1.5.70.2, S:V511I) with 20 seqs
7c2e3c0 - Cornelius Roemer, 2023-07-11 11:16:57 +0200 : Add relevant issues to lineage notes
bb5a2d6 - Cornelius Roemer, 2023-07-11 17:48:45 +0200 : Designate FU.4 (S:Y453F, T29410C) with 12 seqs
4f8b6f0 - Cornelius Roemer, 2023-07-11 17:55:53 +0200 : Designate XBB.1.5.92 (ORF1a:T1168I, Ecuador) with 150 seqs
08e3e8b - Cornelius Roemer, 2023-07-11 18:02:21 +0200 : Designate XBB.1.5.93 (C337T, C19186T, USA, 77 seqs) and HD.1 (S:T346I, USA/Dominican Republic, 10 seqs)
115963b - Cornelius Roemer, 2023-07-13 01:27:06 +0200 : Designate XBB.1.16.15 (S:P521S, T10756C, T14067C, on C27513T branch) with 30 seqs
d951ada - Cornelius Roemer, 2023-07-13 23:41:53 +0200 : Designate GK.1.1 (XBB.1.5.70.1.1, S:T573I, Brazil) with 6 seqs
7afb37c - Cornelius Roemer, 2023-07-13 23:42:53 +0200 : Designate GK.1.2 (XBB.1.5.70.1.2, S:N185D, Brazil) with 7 seqs
fe717fc - Cornelius Roemer, 2023-07-13 23:44:22 +0200 : Designate GK.1.3 (ORF1a:E633A, ORF1b:D1130G, USA/Canada)
5420763 - Cornelius Roemer, 2023-07-13 23:45:59 +0200 : Designate additional GK.1 sequences
80108f5 - Cornelius Roemer, 2023-07-14 00:05:03 +0200 : Designate HE.1 (FE.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico) with 180 seqs
c2d2412 - Cornelius Roemer, 2023-07-14 00:08:29 +0200 : Designate FE.1.1.3 (XBB.1.18.1.1.1.3, A24775G, China) with 75 seqs
aa955b5 - Cornelius Roemer, 2023-07-14 00:09:45 +0200 : Designate FE.1.1.4 (XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil) with 50 seqs
c36d5d6 - Cornelius Roemer, 2023-07-14 00:33:35 +0200 : Designate HF.1 (XBB.1.16.13.1, S:K304N, South Korea/Japan) with 140 seqs
df3436b - Cornelius Roemer,...

pango designation v1.21

Release notes

fe4cc44 - Cornelius Roemer, 2023-05-18 21:55:50 +0200 : Update README.md: recommend partial clone to save 15GB
777d3b8 - InfrPopGen, 2023-05-22 14:08:54 +0100 : Added new lineage XBB.1.5.70 from #1982 with 5 new sequence designations, and 0 updated
79816d8 - InfrPopGen, 2023-05-22 14:10:27 +0100 : Merge pull request #2007 from InfrPopGen/master
4803957 - Cornelius Roemer, 2023-05-23 17:17:11 +0200 : Designate FL.4.1 (S:N450I) with 80 sequences
edd71a5 - Cornelius Roemer, 2023-05-23 17:21:00 +0200 : Designate FL.4.2 (ORF1a:T951I, China) with 20 sequences
ee9b439 - Cornelius Roemer, 2023-05-23 17:26:11 +0200 : Add FL.1.4 (S:478R, S:Q1208H, Vietnam, from issue #1985) with 30 seqs
783e229 - Cornelius Roemer, 2023-05-23 17:29:05 +0200 : Designate FL.13 (G4354A) with 1k seqs
bc1a317 - Cornelius Roemer, 2023-05-23 17:31:00 +0200 : Add FL.13.1 (S:A411S, ORF1a:P80S, China, from #1996) with 100 seqs
b7f3d28 - Cornelius Roemer, 2023-05-23 17:35:41 +0200 : Add FL.14 (S:V1122M, C29311T, C22978T, Russia/Finland) with 100 seqs
ac884a4 - Cornelius Roemer, 2023-05-23 17:37:44 +0200 : Add extra GB.1 designations
b30181a - Cornelius Roemer, 2023-05-23 17:41:11 +0200 : Designate GF.1 (XBB.1.5.24.1 with S:E748V, C19524T) with 250 seqs
f8846db - Cornelius Roemer, 2023-05-23 17:45:56 +0200 : Designate GG.1 (XBB.1.5.38.1, S:478R, Europe) with 40 seqs
79c55b3 - Cornelius Roemer, 2023-05-24 11:29:18 +0200 : Add FK.1.3 (ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia) with 100 seqs
30c8269 - Cornelius Roemer, 2023-05-24 11:31:09 +0200 : Add extra FK.1.1 designations that are wrong on the Usher tree
4349543 - Cornelius Roemer, 2023-05-24 11:34:07 +0200 : Add FK.1.4 (S:S704L, on C27804>ORF7a:Y40H branch, Australia) with 60 seqs
1e2e43b - Cornelius Roemer, 2023-05-24 11:36:58 +0200 : Add FK.1.2.1 (ORF1a:T891I, Germany/Denmark/Finland/Austria) with 170 seqs
1321897 - Cornelius Roemer, 2023-05-24 11:51:24 +0200 : Add FY.1.1 (S:A83S, Malaysia/Japan) with 100 seqs
0e8bf36 - Cornelius Roemer, 2023-05-24 11:53:21 +0200 : Add FY.3.1 (S:I210T, China) with 50 seqs
90a5a41 - Cornelius Roemer, 2023-05-24 11:57:08 +0200 : Add lineage XBB.1.41 (S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997) with 15 seqs
ba1ad48 - Cornelius Roemer, 2023-05-24 11:59:11 +0200 : Add EG.5.2 (N:L161F) with 130 seqs
399b473 - Cornelius Roemer, 2023-05-24 12:00:43 +0200 : Add FY.4.1 (S:S494P, Kenya) with 20 seqs
c5bd894 - Cornelius Roemer, 2023-05-24 12:28:41 +0200 : Fix lineage_notes.txt
893c42c - Cornelius Roemer, 2023-05-25 17:24:33 +0200 : Add XBB.1.5.71 (S:V511I, Spain) with 80 designations
9056350 - Cornelius Roemer, 2023-05-25 17:29:44 +0200 : Add XBB.1.16.7 (S:T732I after T12214C, Singapore/Japan/SouthKorea) with 90 designations
0cb8903 - Cornelius Roemer, 2023-05-26 11:07:14 +0200 : Add XBB.1.16.8 (S:T732I after C28531T, India/USA/China/Australia) with 100 seqs
cd66713 - InfrPopGen, 2023-05-27 11:37:05 +0100 : Fixed typo introduced to lineage_notes.txt entry for FR.1
d7e4664 - InfrPopGen, 2023-05-27 11:38:41 +0100 : Merge pull request #2022 from InfrPopGen/master
981bab4 - InfrPopGen, 2023-05-29 12:53:13 +0100 : Added new lineage FL.15 from #1994 with 53 new sequence designations, and 0 updated designations
bda46e2 - InfrPopGen, 2023-05-29 12:54:52 +0100 : Merge pull request #2026 from InfrPopGen/master
c36901d - Cornelius Roemer, 2023-05-30 10:17:47 +0200 : Designate EG.6 (XBB.1.9.2 with C1684T, Israel) with 250 seqs
d0acddd - Cornelius Roemer, 2023-05-30 10:19:06 +0200 : Designate EG.6.1 (S:456L, Israel/Japan/Canada) with 70 seqs
d0696fb - Cornelius Roemer, 2023-05-30 11:44:42 +0200 : Designate FP.2 (XBB.1.11.1 with S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore) with 70 seqs
b5e3461 - Cornelius Roemer, 2023-05-30 11:46:16 +0200 : Designate FP.3 (XBB.1.11.1.3, S:478R, Indonesia/Malaysia) with 40 seqs
8a1522f - Cornelius Roemer, 2023-05-30 11:49:40 +0200 : Designate FP.4 (XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan) with 150 seqs
4c3870b - Cornelius Roemer, 2023-05-30 11:51:03 +0200 : Designate FP.2.1 (S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia) with 35 seqs
e6e3ffb - Cornelius Roemer, 2023-05-30 19:33:03 +0200 : Designate XBB.1.16.9 (S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA) with 10 seqs
ecb7f8c - Cornelius Roemer, 2023-05-30 19:46:24 +0200 : Designate CM.7.1 (S:K147E, Europe) with 20 seqs
300f836 - Cornelius Roemer, 2023-05-30 19:49:09 +0200 : Designate XBB.2.10 (S:Q52H, Latvia/Poland) with 100 seqs
c9a4315 - Cornelius Roemer, 2023-05-30 19:59:37 +0200 : Designate FL.16 (S:478R, ORF1a:P1018T, Indonesia) with 30 seqs
27fc997 - Cornelius Roemer, 2023-05-30 20:07:27 +0200 : Specify nuc mutations for S:F456L in lineage notes (there are 3 options)
ec4edbb - Cornelius Roemer, 2023-05-30 20:10:40 +0200 : Add 456L nuc mutation for EG.6.1 to lineage notes
e2592d6 - Cornelius Roemer, 2023-05-30 21:19:07 +0200 : Redesignate FL.16 as XBB.1.9.7 as it does not have XBB.1.9.1 defining 11956C
b855126 - Cornelius Roemer, 2023-05-31 00:26:50 +0200 : Designate XBB.1.5.72 (S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America) with 30 seqs
b77684a - Cornelius Roemer, 2023-05-31 12:25:08 +0200 : Designate FR.1.1 (S:P82H, ORF1a:L293F, China) with 80 seqs
5bf2295 - Cornelius Roemer, 2023-05-31 12:28:36 +0200 : Designate FR.1.2 (S:R190M, China) with 15 seqs
23a9cbc - Cornelius Roemer, 2023-05-31 12:54:34 +0200 : Designate XBB.1.42 (S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China) with 180 seqs
ef3c041 - Cornelius Roemer, 2023-05-31 15:22:43 +0200 : Designate XBB.1.43 (G11071A, Indonesia, from #2015) with 200 seqs
1f78bf8 - Cornelius Roemer, 2023-05-31 15:25:08 +0200 : Designate XBB.1.43.1 (S:486P, ORF1a:A2621V, A20713C, from #2015) with 160 seqs
12f93ab - Cornelius Roemer, 2023-06-01 17:51:20 +0200 : Designate XBB.2.6.1 (S:P521S, Peru, from #1869) with 290 seqs
ec9cb23 - Cornelius Roemer, 2023-06-01 17:58:06 +0200 : Designate GH.1 (XBB.2.6.1 with ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869) with 230 seqs
05291d7 - Cornelius Roemer, 2023-06-01 18:05:58 +0200 : Designate XBB.2.6.2 (S:T19L, Peru) with 160 seqs
4164f55 - Cornelius Roemer, 2023-06-01 18:16:56 +0200 : Designate XBB.2.3.12 (S:S494P, from #2029) with 60 seqs
a3e16cb - Cornelius Roemer, 2023-06-01 18:27:52 +0200 : Designate XBB.1.5.73 (T28271C, USA/Peru) with 600 seqs
b123380 - Cornelius Roemer, 2023-06-01 18:34:31 +0200 : Designate FD.2.1 (XBB.1.5.15.2.1, ORF1a:D3022N, Peru) with 30 seqs
218f387 - Cornelius Roemer, 2023-06-01 18:39:37 +0200 : Designate XBB.1.5.74 (S:K462R, ORF1b:V728I, Peru, from #1998) with 40 seqs
16473ab - Cornelius Roemer, 2023-06-01 18:47:47 +0200 : Designate XBB.1.5.75 (C3695T, Peru/France) with 450 seqs
e4a9ab4 - Cornelius Roemer, 2023-06-01 19:24:17 +0200 : Designate XBB.1.5.76 (ORF1a:T3696A, Chile) with 650 seqs
b911018 - Cornelius Roemer, 2023-06-01 19:27:51 +0200 : Designate XBB.1.5.77 (T18732C, Colombia/USA) with 1300 seqs
f39a7c6 - Cornelius Roemer, 2023-06-01 19:33:13 +0200 : Designate XBB.1.5.78 (ORF1a:N460D, Mexico) with 250 seqs
0894cc7 - Cornelius Roemer, 2023-06-01 19:38:16 +0200 : Designate XBB.1.5.79 (N:Q260L, Mexico/USA) with 400 seqs
9640b11 - Cornelius Roemer, 2023-06-01 19:44:40 +0200 : Designate XBB.1.5.80 (A16812G, C21812T, USA/Romania) with 500 seqs
b5632de - Cornelius Roemer, 2023-06-01 19:50:39 +0200 : Designate XBB.1.5.81 (S:478R, G4657A, South Africa) with 20 seqs
5d18f8c - InfrPopGen, 2023-06-02 11:47:15 +0100 : Added new lineage GJ.1 from #2005 with 43 new sequence designations, and 2 updated from XBB.2.3.3
3e2dc19 - InfrPopGen, 2023-06-02 11:48:43 +0100 : Merge pull request #2033 from InfrPopGen/master
5ea2b89 - ciscorucinski, 2023-06-04 17:50:13 +0900 : fixed alias irregularity (ec9cb23)
5197b4a - Cornelius Roemer, 2023-06-06 17:09:00 +0200 : Designate FL.1.5 (S:456L (T22928C), ORF1b:K2557R, from #1985 and #2036) with 60 seqs
f231e5e - Cornelius Roemer, 2023-06-06 17:10:38 +0200 : Designate FL.1.5.1 (S:478R, from #2036) with 7 seqs
ed98932 - Cornelius Roemer, 2023-06-06 17:18:23 +0200 : Designate GK.1 (Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025) with 100 seqs
7c80458 - Cornelius Roemer, 2023-06-06 17:28:03 +0200 : Designate XBB.1.34.1 (S:E554K, ORF1b:P970L) with 20 seqs
ee0c54c - Cornelius Roemer, 2023-06-06 17:30:06 +0200 : Designate XBB.1.34.2 (S:K182I, ORF8:C90F, ORF1a:G989C) with 10 seqs
54905da - Angie Hinrichs, 2023-06-06 11:34:39 -0700 : Merge pull request #2035 from ciscorucinski/master
8f4b2eb - Cornelius Roemer, 2023-06-07 18:10:08 +0200 : Designate XCD (XBB.1*/BQ.1.1.25*, S:R214H, S:478I, Indonesia, from #2042) with 14 seqs
52a02da - Cornelius Roemer, 2023-06-07 18:33:05 +0200 : Designate XBB.8.2 (S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995) with 25 seqs
368ca3b - Cornelius Roemer, 2023-06-08 13:06:28 +0200 : Fix typo in lineages.csv (XBD -> XCD)
76b33d3 - Cornelius Roemer, 2023-06-09 20:20:19 +0200 : Designate EG.7 (S:R403K, S:L513F, ORF1a:N2531S, Germany/England) with 18 seqs
1e361de - Cornelius Roemer, 2023-06-09 20:27:59 +0200 : Designate GJ.1.1 (XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I) with 30 seqs
71c4692 - Cornelius Roemer, 2023-06-09 20:29:46 +0200 : Designate GJ.2 (XBB.2.3.3.2, S:I1114S, Europe) with 50 seqs
0666c34 - Cornelius Roemer, 2023-06-09 20:39:22 +0200 : Designate FL.1.10.1 (S:E554K, C4234T, South Korea) with 50 seqs
55342b2 - Cornelius Roemer, 2023-06-09 20:47:37 +0200 : Designate XBB.1.41.1 (S:478R, France) with 10 seqs
11dc754 - Cornelius Roemer, 2023-06-09 20:59:34 +0200 : Designate XCE (BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from lineage-proposals#123) with 45 seqs
74eed87 - Cornelius Roemer, 2023-06-09 21:14:25 +0200 : Designate FE.1.1.1 (ORF1a:T999I, North America) with 180 seqs
80ddb92 - Cornelius Roemer, 2023-06-09 21:16:00 +0200 : Design...

pango designation v1.20

Release notes

fd7e152 - Cornelius Roemer, 2023-03-30 23:44:24 +0200 : Added lineage BN.1.3.10 (ORF1a:Q1918R, C13608T) with 40 designations
0574eba - InfrPopGen, 2023-03-31 15:13:51 +0100 : Added new lineage FK.1 from #1718 with 70 new sequence designations, and 89 updated from CH.1.1 and CH.1.1.17
1688362 - InfrPopGen, 2023-03-31 15:15:09 +0100 : Merge pull request #1831 from InfrPopGen/master
9415f0f - InfrPopGen, 2023-04-03 15:41:57 +0100 : Added new lineage BQ.1.1.73 from #1740 with 47 new sequence designations, and 3 updated from BQ.1.1
1d22dbd - InfrPopGen, 2023-04-03 15:43:04 +0100 : Merge pull request #1840 from InfrPopGen/master
d27266d - InfrPopGen, 2023-04-03 17:17:31 +0100 : Added new recombinant lineage XCA from #1752 with 41 new sequence designations, and 0 updated
6b58f62 - Cornelius Roemer, 2023-04-04 16:38:41 +0200 : Added lineage EG.2 (XBB.1.9.2 with S:478R) with 30 designations
9ac4960 - Cornelius Roemer, 2023-04-04 16:40:33 +0200 : Added lineage XBB.1.31 (S:453F and S:478R) with 17 designations
7f8ba07 - Cornelius Roemer, 2023-04-04 16:51:04 +0200 : Fix bug in designation_helper.py when there are no children
a69145a - Cornelius Roemer, 2023-04-04 16:53:58 +0200 : Added lineage XBB.1.32 (ORF1a:E148D) with 90 designations
21b1e91 - Cornelius Roemer, 2023-04-04 16:59:50 +0200 : Added lineage FL.1 (XBB.1.9.1 with S:701V) with 130 designations
57d6cb4 - Cornelius Roemer, 2023-04-04 17:12:31 +0200 : Added lineage XBB.2.3.3 (S:182N) with 30 designations
d68d647 - Cornelius Roemer, 2023-04-04 17:14:14 +0200 : Added lineage XBB.2.3.4 (S:478Q) with 30 designations
ebe33d3 - Cornelius Roemer, 2023-04-04 17:17:11 +0200 : Added lineage XBB.1.5.40 (S:478I) with 30 designations
b03e914 - Cornelius Roemer, 2023-04-04 17:59:13 +0200 : Added lineage FM.1 (BQ.1.1.53 with S:613H) with 150 designations
a53e555 - Cornelius Roemer, 2023-04-04 18:00:14 +0200 : Added lineage FM.2 (BQ.1.1.53 with S:946R) with 180 designations
55d4ad1 - Cornelius Roemer, 2023-04-04 18:25:22 +0200 : Added lineage FL.2 (XBB.1.9.1 with T4579A) with 600 designations
1270406 - InfrPopGen, 2023-04-05 19:13:56 +0100 : Added new lineage BQ.1.1.74 from #1817 with 70 new sequence designations, and 6 updated from BQ.1.1
adfca1a - InfrPopGen, 2023-04-05 19:15:50 +0100 : Merge pull request #1848 from InfrPopGen/master
c29cc87 - Cornelius Roemer, 2023-04-05 21:32:32 +0200 : Sort lineage_notes.txt correctly
b211300 - Cornelius Roemer, 2023-04-05 21:37:02 +0200 : Added lineage FN.1 (BQ.1.1.74 with S:478R) from #1817 with 70 designations
9d23043 - Cornelius Roemer, 2023-04-07 22:07:36 +0200 : Added lineage EG.1.1 (S:V70F) with 50 designations
280fd9a - Cornelius Roemer, 2023-04-07 22:18:06 +0200 : Added lineage XBB.1.28.1 (S:356T) with 50 designations
71514b7 - Cornelius Roemer, 2023-04-07 22:33:57 +0200 : Added lineage CJ.1.2 (ORF1a:L2609F) with 300 designations
c3a167d - Cornelius Roemer, 2023-04-07 22:36:21 +0200 : Added lineage CJ.1.3 (A261G reversion, G4960A, C14790T) with 300 designations
d42820b - Cornelius Roemer, 2023-04-08 15:13:24 +0200 : Added lineage XBF.1.1 (S:P621S) with 60 designations
85d749a - Cornelius Roemer, 2023-04-08 15:16:08 +0200 : Add lineage XBF.10 (S:M153I) with 16 designations
5e62d57 - InfrPopGen, 2023-04-11 11:45:14 +0100 : Added new lineage FP.1 from #1847 with 29 new sequence designations, and 0 updated
6177686 - InfrPopGen, 2023-04-11 11:46:59 +0100 : Merge pull request #1873 from InfrPopGen/master
7921837 - InfrPopGen, 2023-04-11 13:53:41 +0100 : Added new lineage BF.42 from #1855 with 30 new sequence designations, and 0 updated
7b1f1a3 - InfrPopGen, 2023-04-11 13:55:11 +0100 : Merge pull request #1874 from InfrPopGen/master
af07cc3 - InfrPopGen, 2023-04-11 16:08:46 +0100 : Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1
8b1904d - InfrPopGen, 2023-04-11 16:09:52 +0100 : Merge pull request #1875 from InfrPopGen/master
e236502 - InfrPopGen, 2023-04-12 11:34:16 +0100 : Added new lineage XBB.2.3.5 from #1846 with 5 new sequence designations, and 0 updated
67245eb - InfrPopGen, 2023-04-12 11:35:15 +0100 : Merge pull request #1880 from InfrPopGen/master
95a25bd - InfrPopGen, 2023-04-13 16:00:49 +0100 : Added new lineage FK.1.1 from #1881 with 0 new sequence designations, and 18 updated from FK.1
52e606d - InfrPopGen, 2023-04-13 16:01:52 +0100 : Merge pull request #1883 from InfrPopGen/master
2797d5f - InfrPopGen, 2023-04-14 14:24:28 +0100 : Added new recombinant lineage XCB from #1668 with 46 new sequence designations, and 0 updated
64db020 - InfrPopGen, 2023-04-14 14:26:07 +0100 : Merge pull request #1887 from InfrPopGen/master
4e851b1 - Cornelius Roemer, 2023-04-17 18:51:31 +0200 : Minor lineage notes improvements
342920d - InfrPopGen, 2023-04-17 19:33:11 +0100 : Added new lineage FQ.1 from #1797 with 40 new sequence designations, and 0 updated
a90bc6b - InfrPopGen, 2023-04-17 19:34:38 +0100 : Merge pull request #1905 from InfrPopGen/master
223d79a - InfrPopGen, 2023-04-18 14:39:54 +0100 : Added new lineage XBB.1.33 from #1879 with 18 new sequence designations, and 0 updated
7066483 - InfrPopGen, 2023-04-18 14:41:15 +0100 : Merge pull request #1912 from InfrPopGen/master
45c0707 - Cornelius Roemer, 2023-04-19 16:24:19 +0200 : Designate lineage XBL.1 (S:V635I) with 50 designations
09f25aa - Cornelius Roemer, 2023-04-19 16:31:16 +0200 : Designate lineages XBL.2 and XBL.3, add extra strains for XBL
b0f4701 - Cornelius Roemer, 2023-04-19 16:52:03 +0200 : Designate lineage XBB.2.3.6 (N:T166I) with 158 sequences
c6afc3c - Cornelius Roemer, 2023-04-19 16:59:23 +0200 : Designate lineage XBB.2.3.7 (ORF1a:T4087I) with 60 designations
7ff92cc - Cornelius Roemer, 2023-04-19 17:02:20 +0200 : Add extra XBB.2.3 to lineages.csv
99ba344 - InfrPopGen, 2023-04-20 19:46:25 +0100 : Added new lineage XBB.1.34 from #1621 with 33 new sequence designations, and 0 updated
ba825c7 - InfrPopGen, 2023-04-20 19:47:30 +0100 : Merge pull request #1926 from InfrPopGen/master
8e6f6dd - InfrPopGen, 2023-04-21 14:12:44 +0100 : Added new lineage FR.1 from #1814 with 244 new sequence designations, and 4 updated from BN.1.2.3
b5780a3 - InfrPopGen, 2023-04-21 14:14:02 +0100 : Merge pull request #1934 from InfrPopGen/master
0ab8a0b - InfrPopGen, 2023-04-21 16:08:47 +0100 : Added new lineage FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
a2da67c - InfrPopGen, 2023-04-21 16:10:14 +0100 : Merge pull request #1935 from InfrPopGen/master
d6f82ca - InfrPopGen, 2023-04-21 16:12:17 +0100 : Added missing lineages.csv updates for FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
441061d - InfrPopGen, 2023-04-21 16:14:18 +0100 : Merge pull request #1936 from InfrPopGen/master
f2fa07d - Cornelius Roemer, 2023-04-22 17:42:56 +0200 : Add recombinant XCC (CH.1.1.1/XBB.1.9.1) with 30 designations
c3a7f99 - Cornelius Roemer, 2023-04-22 18:17:57 +0200 : Designate EG.3 (XBB.1.9.2 with ORF1a:L2278F on N:L219F)
8289cb0 - Cornelius Roemer, 2023-04-22 18:20:35 +0200 : Added lineage EG.1.2 (ORF7b:H42Y) with 600 designations
0431660 - Cornelius Roemer, 2023-04-22 18:22:06 +0200 : Added lineage EG.1.3 (C3784T, A6613G) with 500 designations
a03b0dc - Cornelius Roemer, 2023-04-22 18:24:23 +0200 : Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations
242699e - Cornelius Roemer, 2023-04-22 18:32:31 +0200 : Added lineage EG.4 (XBB.1.9.2 with C28651T) with 400 designations
cd5580d - Cornelius Roemer, 2023-04-22 18:37:06 +0200 : Added lineage EG.5 (S:F456L) with 12 designations
2d736bc - Cornelius Roemer, 2023-04-22 18:46:19 +0200 : Added lineage FL.3 (XBB.1.9.1 with T1753C) with 900 designations
90a2ec2 - Cornelius Roemer, 2023-04-22 18:48:48 +0200 : Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations
721729e - Cornelius Roemer, 2023-04-22 18:53:04 +0200 : Added lineage FL.5 (XBB.1.9.1 with N:T362I) with 200 designations
416a59a - Cornelius Roemer, 2023-04-22 19:48:43 +0200 : Added lineage FK.1.2 (ORF1a:L384F, ORF1a:R550H) with 300 designations
85e7c0b - Cornelius Roemer, 2023-04-22 21:00:18 +0200 : Added lineage FT.1 (XBB.1.5.39 with S:I197V) with 300 designations
7820a81 - Cornelius Roemer, 2023-04-22 21:45:29 +0200 : Added lineage XAY.2.3 (ORF1a:A131V) with 150 designations
62fec83 - Cornelius Roemer, 2023-04-22 21:50:59 +0200 : Added lineage XAY.1.1.2 (C14838T) with 35 designations
b119264 - Cornelius Roemer, 2023-04-22 21:55:06 +0200 : Added lineage XAY.1.1.3 (C6040T, C8290T, T15153C) with 50 designations
c93a471 - Cornelius Roemer, 2023-04-22 22:39:41 +0200 : Added lineage XBB.1.16.2 (ORF3a:V13L, ORF1a:P926H) with 200 designations
b75a5d4 - Cornelius Roemer, 2023-04-22 22:42:38 +0200 : Added lineage XBB.1.16.3 (A2893C) with 60 designations
4d852e2 - Cornelius Roemer, 2023-04-22 22:47:06 +0200 : Added lineage FU.1 (XBB.1.16.1 with T3802C) with 150 designations
d0f51a1 - Cornelius Roemer, 2023-04-22 22:49:39 +0200 : Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations
ee79541 - Cornelius Roemer, 2023-04-22 23:09:51 +0200 : Added lineage XBB.1.5.41 (S:V772I, S:P521T) from #1941
81bb097 - Cornelius Roemer, 2023-04-22 23:31:31 +0200 : Added lineage XBB.1.5.42 (S:E281D) with 100 designations from #1933
befe4e2 - Cornelius Roemer, 2023-04-22 23:53:13 +0200 : Added lineage FL.2.1 (C10228T) with 200 designations
68615bb - Cornelius Roemer, 2023-04-22 23:56:39 +0200 : Added lineage FL.2.2 (S:478R) with 15 designations from #1927
b622915 - Cornelius Roemer, 2023-04-23 18:09:33 +0200 : tooling: add --keep-first option to add_to_lineages.sh
052d3f4 - Cornelius Roemer, 2023-04-23 18:10:15 +0200 : Add extra XBC.1.6 designations
6501158 - Cornelius Roemer, 2023-04-23 18:13:07 +0200 : Added lineage XBC.1.6.1 (ORF1b:N498I) with 80 designations
6b0d4fd - Cornelius Roemer, 2023-04-23 18:14:28 +0200 : Added lineage XBC.1.6.2 (ORF1a:D827N) with 35 designations
0c...

pango designation v1.19

Release notes

e531938 - Cornelius Roemer, Wed Mar 29 21:10:18 2023 +0200 : Added lineage FJ.1 (CH.1.1.19 with ORF1a:A1204V) with 180 designations
c78e249 - InfrPopGen, Wed Mar 29 15:42:30 2023 +0100 : Merge pull request #1818 from InfrPopGen/master
2a62dcf - InfrPopGen, Wed Mar 29 15:40:59 2023 +0100 : Added new lineage CH.1.1.22 from #1670 with 7 new sequence designations, and 9 updated from CH.1.1
f692d76 - Cornelius Roemer, Wed Mar 29 01:36:55 2023 +0200 : Added CH.1.1.21 (S:N481Y) from #1799, 50 designations
c578f47 - Cornelius Roemer, Tue Mar 28 23:30:31 2023 +0200 : fix: move "taxon,lineage" back to top
19170f5 - Angie Hinrichs, Tue Mar 28 14:19:23 2023 -0700 : #1776 was for XBB.2.3.2 not XBB.2.3, thanks @Over-There-Is, fixes #1803.
5cf9cd0 - InfrPopGen, Tue Mar 28 16:45:08 2023 +0100 : Merge pull request #1815 from InfrPopGen/master
bac15e0 - InfrPopGen, Tue Mar 28 16:42:35 2023 +0100 : Added new recombinant lineage XBZ from #1666 with 0 new sequence designations, and 238 updated designations
4a522cb - Angie Hinrichs, Mon Mar 27 11:35:36 2023 -0700 : Added 995 designations for the part of BA.5.1.15 that doesn't have C10183T (#1039). Many were previously designated BA.5.1; 20 were previously designated BA.5.1.22, 8 were BA.5.1.3 and 2 were BA.5.1.25 due to having both the defining mutations for those respective lineages and the defining mutation for BA.5.1.15 (C10790T).
385e78d - Cornelius Roemer, Mon Mar 27 04:43:37 2023 +0200 : Added lineage XBB.1.5.39 (ORF1a:M3684T) with 800 designations
37fb661 - Cornelius Roemer, Mon Mar 27 04:40:58 2023 +0200 : Added lineage FH.1 (XBB.1.5.17 with S:T883I) with 140 designations
773437b - Cornelius Roemer, Mon Mar 27 04:36:54 2023 +0200 : Added lineage XBB.1.5.38 (S:I666V, ORF1a:T403I) with 150 designations
7bfbd46 - Cornelius Roemer, Mon Mar 27 04:24:15 2023 +0200 : Added lineage FD.2 (XBB.1.5.15 with S:Q146K) from #1600 with 1000 designations
1d92447 - Cornelius Roemer, Mon Mar 27 04:21:09 2023 +0200 : Added lineage XBB.1.5.37 (S:K1045R) with 300 designations
ea6f34a - Cornelius Roemer, Fri Mar 24 21:11:20 2023 +0100 : Fix typo in lineage notes for mutation of CM.8.1.4 (thanks @FedeGueli)
411700b - Cornelius Roemer, Fri Mar 24 21:06:57 2023 +0100 : Added related issues to lineage notes, thanks @FedeGueli
1ee797a - Cornelius Roemer, Fri Mar 24 21:02:10 2023 +0100 : Add helper scripts to make designation more ergonomic
6dae4b8 - Cornelius Roemer, Fri Mar 24 20:56:54 2023 +0100 : Added lineage BF.5.5 (S:K147N) with 250 designations
0225b01 - Cornelius Roemer, Fri Mar 24 20:53:31 2023 +0100 : Added lineage XBB.2.7.1 (S:Y453F, S:K478Q, Singapore, #1725)
d6fed05 - Cornelius Roemer, Fri Mar 24 20:46:29 2023 +0100 : Added lineage XBB.2.8 (C6968T) with 250 designations
0ce4960 - Cornelius Roemer, Fri Mar 24 20:43:20 2023 +0100 : Added lineage DN.1.1.4 (S:N481S) with 70 designations
1ea0850 - Cornelius Roemer, Fri Mar 24 20:41:37 2023 +0100 : Added lineage DN.1.1.3 (S:S704L) with 100 designations
19d4246 - Cornelius Roemer, Fri Mar 24 19:26:18 2023 +0100 : Added lineage CM.8.1.4 (ORF1a:N2890D) with 86 designations
8ab5b25 - Cornelius Roemer, Fri Mar 24 19:23:35 2023 +0100 : Added lineage CM.8.1.3 (S:Y1272H) with 48 designations
e3c981f - Cornelius Roemer, Fri Mar 24 19:20:30 2023 +0100 : Added lineage CH.1.1.20 (S:T299I, S:R403K, S:D1165G) from #1736
6f71f0c - Cornelius Roemer, Fri Mar 24 19:17:22 2023 +0100 : Added lineage CH.1.1.19 (C2773) with 450 designations
0947ed6 - Cornelius Roemer, Fri Mar 24 19:15:38 2023 +0100 : Added lineage FG.3 (S:I934V) with 75 designations
1cd5d3b - Cornelius Roemer, Fri Mar 24 19:14:29 2023 +0100 : Added lineage FG.2 (S:D178N) with 80 designations
a8a99b5 - Cornelius Roemer, Fri Mar 24 19:12:58 2023 +0100 : Added lineage FG.1 (XBB.1.5.16.1 with S:T284I, S:R403K, S:L513F) from #1751
fb4e8b2 - Cornelius Roemer, Fri Mar 24 19:09:27 2023 +0100 : Added lineage XBF.9 (ORF1b:S1003G) with 90 designations
3dd84ab - Cornelius Roemer, Fri Mar 24 19:06:08 2023 +0100 : Added lineage BQ.1.26.2 (S:F157L) with 90 designations
73062bf - Cornelius Roemer, Fri Mar 24 19:01:46 2023 +0100 : Added lineage BL.1.5 (S:A475V) with 120 designations
fa0fb80 - Cornelius Roemer, Fri Mar 24 18:56:09 2023 +0100 : Added lineage XBB.1.5.36 (C9442T) with 240 designations
2a3dec1 - Cornelius Roemer, Fri Mar 24 18:53:47 2023 +0100 : Added lineage XBB.1.5.35 (S:N978S, USA, from #1699) with 400 designations
8032c82 - Cornelius Roemer, Fri Mar 24 18:46:07 2023 +0100 : Added lineage XBB.1.30 (ORF1b:K2557R) with 150 designations
086bc4f - Cornelius Roemer, Fri Mar 24 18:39:38 2023 +0100 : Added lineage XBB.1.5.34 (ORF1a:T1754I) with 430 designations
94ecd67 - Cornelius Roemer, Fri Mar 24 18:36:59 2023 +0100 : Added lineage XBB.1.29 (ORF1a:L3829F, S:A292S) with 50 designations
5fdd9b0 - Cornelius Roemer, Fri Mar 24 18:33:34 2023 +0100 : Added lineage XBB.1.28 (S:R403K) with 13 designations
884b1f7 - Cornelius Roemer, Fri Mar 24 18:02:06 2023 +0100 : Added lineage CH.1.1.18 (S:K187T) with 150 designations, from #1747
4267069 - Cornelius Roemer, Fri Mar 24 17:58:40 2023 +0100 : Added lineage XBB.2.3 (S:G184V, ORF1a:R2159W) with 50 designations from #1776
c49a12a - Cornelius Roemer, Fri Mar 24 17:57:05 2023 +0100 : Added lineage XBB.2.3.1 (S:D80Y) with 80 designations
b4fb9dd - Cornelius Roemer, Fri Mar 24 17:52:32 2023 +0100 : Added lineages XBB.1.5.31, XBB.1.5.32, XBB.1.5.33
cdcebd4 - Cornelius Roemer, Thu Mar 23 23:42:16 2023 +0100 : Added lineage BN.1.3.9 (S:V83F) with 70 designations
d39dc6f - InfrPopGen, Thu Mar 23 19:22:10 2023 +0000 : Merge pull request #1793 from InfrPopGen/master
7b26841 - InfrPopGen, Thu Mar 23 19:20:43 2023 +0000 : Added new lineage CP.8.1 from #1627 with 0 new sequence designations, and 17 updated from CP.8, and 15 from BA.5.2.6
367c6fb - Cornelius Roemer, Thu Mar 23 18:06:49 2023 +0100 : feat: remove non-GISAID strainnames in deduplicate scripts
034686c - Angie Hinrichs, Wed Mar 22 15:41:25 2023 -0700 : Removed a few more INSDC accessions, all have COG-UK names already in lineages.csv.
10404d2 - Angie Hinrichs, Wed Mar 22 15:29:14 2023 -0700 : Replaced INSDC accessions with names, resolved duplicates. Also removed non-sequence-name "strain".
c0aa9f5 - InfrPopGen, Wed Mar 22 16:13:11 2023 +0000 : Merge pull request #1788 from InfrPopGen/master
f662df7 - InfrPopGen, Wed Mar 22 16:11:44 2023 +0000 : Added new lineage FF.1 from #1523 with 65 new sequence designations, and 0 updated
a354100 - Cornelius Roemer, Wed Mar 22 01:37:41 2023 +0100 : Added lineage XBB.1.5.30 (S:A348T) with 250 designations
1558fa9 - Cornelius Roemer, Wed Mar 22 01:35:08 2023 +0100 : Added lineage XBB.1.5.29 (S:A348V) with 25 designations
ae4a881 - Cornelius Roemer, Wed Mar 22 01:31:23 2023 +0100 : Added lineage FE.1 (XBB.1.18.1 with S:F456L) with 10 designations
9c8e360 - Cornelius Roemer, Wed Mar 22 01:21:33 2023 +0100 : Added lineage FD.1.1 (S:F456L) with 50 designations
eb0ca1d - Cornelius Roemer, Wed Mar 22 01:19:30 2023 +0100 : Added lineage FD.1 (XBB.1.5.15 with ORF7b:E3*) with 150 designations
2961a14 - Cornelius Roemer, Wed Mar 22 01:09:37 2023 +0100 : Added lineage FC.1 (BQ.1.1.72 with S:478R) with 80 designations
70571ac - Cornelius Roemer, Wed Mar 22 01:06:37 2023 +0100 : Added lineage BQ.1.1.72 (ORF1b:D100A) with 700 designations
c1c65a2 - Cornelius Roemer, Wed Mar 22 01:03:59 2023 +0100 : Added lineage FB.2 (S:478R) with 70 designations
80d74a9 - Cornelius Roemer, Wed Mar 22 01:02:25 2023 +0100 : Added lineage FB.1 (BQ.1.2.1 with S:D253G) with 25 designations
fbe7ed4 - Cornelius Roemer, Wed Mar 22 00:57:49 2023 +0100 : Added lineage DR.2 (BQ.1.1.3 with S:478R) with 70 designations
ff7b395 - Cornelius Roemer, Wed Mar 22 00:54:41 2023 +0100 : Added lineage FA.2 (BQ.1.1.10 with S:T323I) with 100 designations
92524ad - Cornelius Roemer, Wed Mar 22 00:53:35 2023 +0100 : Added lineage FA.1 (BQ.1.1.10 with S:478R) with 100 designations
115a58a - Cornelius Roemer, Wed Mar 22 00:49:51 2023 +0100 : Added lineage BE.13 (S:346T, S:478R) with 110 designations
df35dea - Cornelius Roemer, Wed Mar 22 00:46:41 2023 +0100 : Added lineage BE.12 (C10834T, T18975C, A29359G) with 300 designations
cc043ad - Cornelius Roemer, Wed Mar 22 00:42:03 2023 +0100 : Added lineage BE.11 (T3049C) with 1000 designations
af92f39 - Cornelius Roemer, Wed Mar 22 00:19:03 2023 +0100 : Added lineage XBB.1.5.28 (S:478R on 17124C polytomy) with 50 designations
29a8c5e - Cornelius Roemer, Wed Mar 22 00:15:20 2023 +0100 : Added lineage EK.2.1 (S:478R) with 35 designations
cb29522 - Cornelius Roemer, Wed Mar 22 00:13:29 2023 +0100 : Added lineage EK.3 (S:P251S) with 130 designations
32848ee - Cornelius Roemer, Wed Mar 22 00:09:05 2023 +0100 : Added lineage XBB.1.5.27 (S:K478R) with 60 designations
39015b3 - Cornelius Roemer, Wed Mar 22 00:06:10 2023 +0100 : Added lineage XBB.1.16.1 (S:T547I) with 60 designations
3ba50f5 - Cornelius Roemer, Wed Mar 22 00:04:09 2023 +0100 : Added lineage XBB.1.27 (S:478R, S:A890V) with 20 designations
42f97a9 - Cornelius Roemer, Tue Mar 21 23:54:35 2023 +0100 : Added lineage EZ.1 (BQ.1.1.43 with S:S247N, S:Y248S) with 50 designations
764d273 - Cornelius Roemer, Tue Mar 21 23:50:56 2023 +0100 : Added lineage EY.1 (EF.1.1.1 with S:Q613H) with 150 designations
911be60 - Cornelius Roemer, Tue Mar 21 23:42:28 2023 +0100 : Added lineage EW.3 (S:A348S) with 50 designations
c433f46 - Cornelius Roemer, Tue Mar 21 23:40:10 2023 +0100 : Added lineage EW.2 (S:A701V) with 200 designations
49a6cbb - Cornelius Roemer, Tue Mar 21 23:38:17 2023 +0100 : Added lineage EW.1 (BQ.1.1.38 with S:478R) with 80 designations
bd69c9c - Cornelius Roemer, Tue Mar 21 23:34:53 2023 +0100 : Added lineage EV.1 (BQ.1.1.71 with S:248H) with 15 designations
6419f4a - Angie Hinrichs, Mon Mar 20 15:45:07 2023 -0700 : Removing incomplete sequence name.
f19893e - Angie Hinrichs, Mon Mar 20 15:15:28 2023 -0700 : Updating some names that ha...

pango designation v1.18.1

e22f5df - InfrPopGen, Tue Feb 14 15:43:08 2023 +0000 : Merge pull request #1657 from InfrPopGen/master
4008ec0 - InfrPopGen, Tue Feb 14 15:42:02 2023 +0000 : Added new lineage BA.5.2.63 from #1636 with 111 new sequence designations, and 0 updated
36a888f - Cornelius Roemer, Mon Feb 13 18:32:41 2023 +0100 : Withdraw BF.7.25 due to being defined by pangolin masked site
96691b9 - Cornelius Roemer, Mon Feb 13 18:09:25 2023 +0100 : Improved notes
69f1d2d - Cornelius Roemer, Mon Feb 13 13:41:41 2023 +0100 : Fix typos in lineage notes, thanks @DoropFan
02021bd - Josh Levy, Sun Feb 12 09:04:43 2023 -0800 : EB has incorrect alias (#1649)
cb2e940 - Cornelius Roemer, Sun Feb 12 14:28:21 2023 +0100 : Added lineages EE.5, EF.1 (BQ.1.1.13.1), EF.1.1, EF.1.1.1, EF.1.2, EF.1.3, EF.2
8b0a890 - Cornelius Roemer, Sun Feb 12 14:12:46 2023 +0100 : Added lineage EE.4 (S:Q52H) with 150 designations
fbed65c - Cornelius Roemer, Sun Feb 12 14:10:37 2023 +0100 : Added lineage BQ.1.1.4 with 500 designations
3974265 - Cornelius Roemer, Sun Feb 12 14:08:56 2023 +0100 : Added lineage EE.2 (ORF1b:V1538I) with 700 designations
55c6219 - Cornelius Roemer, Sun Feb 12 14:07:06 2023 +0100 : Added lineage EE.1 (N:T366I) with 800 designations
da0fbbd - Cornelius Roemer, Sun Feb 12 14:04:52 2023 +0100 : Added lineage ED.3 (S:D843N) with 120 designations
bb7eae7 - Cornelius Roemer, Sun Feb 12 14:02:17 2023 +0100 : Added lineage ED.2 (ORF1a:D928Y) with 700 designations
60a026d - Cornelius Roemer, Sun Feb 12 14:00:35 2023 +0100 : Added lineage ED.1 with 2000 (ORF3a:L108F, ORF1a:C433S) designations
96e9d5f - Cornelius Roemer, Sun Feb 12 02:37:39 2023 +0100 : Add defining mutation of BQ.1.1.52 to lineage notes
01d34e6 - Cornelius Roemer, Sun Feb 12 02:23:27 2023 +0100 : Added lineages BF.7.19.1 and BF.7.26 and fixed bug in lineages.csv
e4a3431 - Cornelius Roemer, Sun Feb 12 01:58:43 2023 +0100 : Added lineage BF.7.25 with 500 designations
75b9a21 - Cornelius Roemer, Sun Feb 12 01:56:34 2023 +0100 : Added lineage BF.7.24 with 1500 designations
6e7df40 - Cornelius Roemer, Sun Feb 12 01:54:03 2023 +0100 : Added lineage BF.7.23 (ORF1b:T239I) with 1000 designations
856e75a - Cornelius Roemer, Sun Feb 12 01:52:01 2023 +0100 : Added lineage BF.7.22 (ORF8:V81I) with 1500 designations
b5a8e51 - Cornelius Roemer, Sun Feb 12 01:49:35 2023 +0100 : Added lineage BF.7.21 with 2000 designations
88cb887 - Cornelius Roemer, Sun Feb 12 01:47:38 2023 +0100 : Added lineage BF.7.20 with 2000 designations
5d625e2 - Cornelius Roemer, Sun Feb 12 01:45:51 2023 +0100 : Added lineage BF.7.19 (ORF7a:R118S) with 1700 designations
02161a1 - Cornelius Roemer, Sun Feb 12 01:16:58 2023 +0100 : Added lineage BA.5.2.62 (S:A653V) with 300 designations
a56a2c1 - Cornelius Roemer, Sun Feb 12 01:05:01 2023 +0100 : Added lineage BA.5.2.61 (S:N450D) with 150 designations
74b20fe - Cornelius Roemer, Sun Feb 12 01:02:22 2023 +0100 : Added lineage BZ.2 (BA.5.2.3 with S:N450D) with 150 designations
f8bc66a - Cornelius Roemer, Sun Feb 12 00:56:23 2023 +0100 : Added lineage BA.5.2.60 (S:N450D) with 300 designations
1a27750 - Cornelius Roemer, Sun Feb 12 00:51:03 2023 +0100 : Added extra BA.5.2.32 designations
30772e4 - Cornelius Roemer, Sun Feb 12 00:47:44 2023 +0100 : Reselected BA.5.2.52 strains as there was a potential bug in them
0266194 - Cornelius Roemer, Sun Feb 12 00:05:18 2023 +0100 : Add issues to lineages
0217088 - Cornelius Roemer, Sat Feb 11 19:12:04 2023 +0100 : Added lineage CZ.2 (BQ.1.1.1.2, S:A688V) with 400 designations
034a603 - Cornelius Roemer, Sat Feb 11 19:08:42 2023 +0100 : Added lineages BQ.1.1.69 (ORF1b:S2027L) and BQ.1.1.70 (ORF1a:A903V, M:S212G)
3f422d7 - Cornelius Roemer, Sat Feb 11 19:04:57 2023 +0100 : Added lineage BQ.1.1.68 and DT.3 (BQ.1.1.32 with S:L176F)
8c6f04c - Cornelius Roemer, Sat Feb 11 19:00:21 2023 +0100 : Added lineage BQ.1.1.67 (S:L176F) with 700 designations
8bd01d1 - Cornelius Roemer, Sat Feb 11 18:54:07 2023 +0100 : Added lineage BQ.1.1.66 (S:K147N) with 100 designations
08f564a - Cornelius Roemer, Sat Feb 11 18:50:09 2023 +0100 : Added lineages BQ.1.1.64 (S:F186S) and BQ.1.1.65 (S:K147I)
4305e5f - Cornelius Roemer, Sat Feb 11 18:39:16 2023 +0100 : Added lineage BQ.1.1.63 (S:Y248H) with 250 designations
7834d48 - Cornelius Roemer, Sat Feb 11 18:34:54 2023 +0100 : Added lineages BQ.1.1.61 (S:P621H) and BQ.1.1.62 (S:P621S)
ced8155 - Cornelius Roemer, Sat Feb 11 18:30:47 2023 +0100 : Added lineages BQ.1.1.58 (S:I934V), BQ.1.1.59 (S:T732I) and BQ.1.1.60 (S:S691F)
d502042 - Cornelius Roemer, Sat Feb 11 18:20:11 2023 +0100 : Added lineages BQ.1.1.56 (S:H1101Y) and BQ.1.1.57 (S:S256A)
46e57d1 - Cornelius Roemer, Sat Feb 11 18:16:34 2023 +0100 : Added lineages BQ.1.1.54 (S:F186S, N:A211T) and BQ.1.1.55 (S:K1149R)
9590884 - Cornelius Roemer, Sat Feb 11 18:06:30 2023 +0100 : Added lineage BQ.1.1.53 (S:N185D) with 280 designations
a588301 - Cornelius Roemer, Sat Feb 11 18:00:51 2023 +0100 : Addedl lineage BQ.1.10.3 (S:K147E) with 100 designations
5388f08 - Cornelius Roemer, Sat Feb 11 17:58:02 2023 +0100 : Added lineage BQ.1.31 (S:K147E) with 300 designations
638d7d3 - Cornelius Roemer, Sat Feb 11 17:52:51 2023 +0100 : Added lineages BQ.1.30 (S:V445A), EC.1 (BQ.1.10.1 with S:Q613H) and EC.1.1 (S:V445A)
c1a359b - Cornelius Roemer, Sat Feb 11 17:09:27 2023 +0100 : Added lineages BA.5.2.58 (S:R346S on branch) and BA.5.2.59 (S:V1264L)
b51a617 - Cornelius Roemer, Sat Feb 11 17:04:11 2023 +0100 : Added lineage BA.5.2.57 (S:R346S) with 1400 designations
44b29c2 - Cornelius Roemer, Sat Feb 11 16:59:06 2023 +0100 : Added lineages BA.5.2.53 (S:A653V), BA.5.2.54 (S:N450D), BA.5.2.55, BA.5.2.56 (S:K444M)
8e63ff9 - Cornelius Roemer, Sat Feb 11 16:40:08 2023 +0100 : Added lineages BA.5.2.51 (S:K444R) and BA.5.2.52 (S:N450D)
3e600c1 - Cornelius Roemer, Sat Feb 11 16:34:07 2023 +0100 : Added extra designations for BA.5.2.50
f8d3387 - Cornelius Roemer, Sat Feb 11 16:29:54 2023 +0100 : Added lineages BF.41 (ORF7b:A43V) and BF.41.1 (S:R346T)
fd9b853 - Cornelius Roemer, Sat Feb 11 16:24:47 2023 +0100 : Added lineage BF.40 (S:V445A) with 200 designations
87e883b - Cornelius Roemer, Sat Feb 11 16:21:36 2023 +0100 : Added lineages BF.39 (S:G181V) and BF.39.1 (S:V445A, S:N450D)
c0130b5 - Cornelius Roemer, Sat Feb 11 16:15:56 2023 +0100 : Added lineages BF.38, BF.38.1(S:Q1201K), BF.38.2 (S:V445A), BF.38.3 (S:P1162S)
769c65b - Cornelius Roemer, Sat Feb 11 16:07:26 2023 +0100 : Added lineage BF.37 (ORF1a:S994L, S:G446D) with 300 designations
a664764 - Cornelius Roemer, Sat Feb 11 16:03:08 2023 +0100 : Added lineage BF.36 (ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V) with 2000 designations
1353f2f - Cornelius Roemer, Sat Feb 11 15:49:42 2023 +0100 : Added lineage BF.35 (S:N450D) with 130 designations
3a31d63 - Cornelius Roemer, Sat Feb 11 15:46:25 2023 +0100 : Added lineages BF.7.17 (S:A688V, S:G1167S) and BF.7.18 (S:K97N)
e55f0c3 - Cornelius Roemer, Sat Feb 11 15:39:01 2023 +0100 : Added lineages BF.7.16 (ORF1a:A498V) and BF.7.16.1 (S:A688V)
da048f5 - Cornelius Roemer, Sat Feb 11 15:14:59 2023 +0100 : Added lineages BA.5.1.36 (S:R346T & S:G261V) and BA.5.1.37 (S:R346T & S:Y248N)
f42fbf1 - Cornelius Roemer, Sat Feb 11 14:44:06 2023 +0100 : Added lineages BA.5.1.35 (ORF1a:I1525M) and EB.1 (BA.5.1.35 with S:R346T)
0f855a4 - Cornelius Roemer, Sat Feb 11 14:35:35 2023 +0100 : Added lineage BA.5.1.34 (S:P1162S) with 1400 designations
b500c69 - Cornelius Roemer, Sat Feb 11 14:32:19 2023 +0100 : Added lineage BA.5.1.33 (S:V1264L) with 1000 designations
3a42a0a - Cornelius Roemer, Sat Feb 11 14:27:05 2023 +0100 : Added lineages CL.1.1 (S:P1162L), CL.1.2 (S:T883I) and CL.1.3 (S:S71F)
c3b75ce - Cornelius Roemer, Sat Feb 11 02:35:25 2023 +0100 : Added lineage BQ.1.10.2 (S:T523N) with 250 designations
b726213 - Cornelius Roemer, Sat Feb 11 02:20:19 2023 +0100 : Added lineages EA.1 (ORF8:C102F/ins_S:247:SKWL) and EA.2 (S:T470I)
68b7875 - Cornelius Roemer, Sat Feb 11 02:16:02 2023 +0100 : Added lineage BQ.1.1.52 with 1000 designations
e16b4b9 - Cornelius Roemer, Sat Feb 11 02:06:15 2023 +0100 : Added lineage BQ.1.15.1 and BQ.1.15.2 (both with ins_S:247:SKWL)
504a2be - Cornelius Roemer, Sat Feb 11 01:57:00 2023 +0100 : Added lineage BQ.1.29 (S:E554Q) with 70 designations
e559fb0 - Cornelius Roemer, Sat Feb 11 01:39:49 2023 +0100 : Added lineages BW.1.1.1 (ORF1a:L864F) and BW.1.1.2 (ORF1b:P1101S)
80d36bc - Cornelius Roemer, Sat Feb 11 01:17:24 2023 +0100 : Added lineage XAY.1.1.1 (S:D1153Y) from #1569 with 20 designations
1dcf0fe - Cornelius Roemer, Sat Feb 11 01:08:56 2023 +0100 : Added lineages XAY.2.1 (N:T24A) and XAY.2.2 (ORF1a:N447S)
d3a59d8 - Cornelius Roemer, Sat Feb 11 00:53:31 2023 +0100 : Added lineage XBC.1.4 (S:G184S) with 30 designations
045fbf4 - Cornelius Roemer, Sat Feb 11 00:51:57 2023 +0100 : Added lineage XBC.1.3 with 80 designations
6bf3629 - Cornelius Roemer, Sat Feb 11 00:24:39 2023 +0100 : Added lineages XBF.2 (ORF8:V62A) and XBF.3 (ORF1a:V274I)
c14ed8f - Cornelius Roemer, Sat Feb 11 00:07:44 2023 +0100 : Added lineage XBF.1 (S:S939F) with 30 designations
0cfc348 - Cornelius Roemer, Fri Feb 10 23:49:14 2023 +0100 : Added lineage BQ.1.1.51 (ORF3a:L101F) with 1000 designations
c30d608 - Cornelius Roemer, Fri Feb 10 23:42:22 2023 +0100 : Added lineage XBB.1.14 (S:G75V, S:E554K) with 30 designations
05bd633 - Cornelius Roemer, Fri Feb 10 23:36:50 2023 +0100 : Added lineage BF.5.4 (ORF1a:K3839R) with 1700 designations
0456a36 - InfrPopGen, Fri Feb 10 15:01:04 2023 +0000 : Merge pull request #1645 from InfrPopGen/master
f261970 - InfrPopGen, Fri Feb 10 14:59:50 2023 +0000 : Added new lineage BQ.1.1.50 from #1577 with 39 new sequence designations, and 0 updated
649f695 - Cornelius Roemer, Fri Feb 10 14:10:26 2023 +0100 : Added lineage XBB.1.13 (S:S490P) with 80 designations from #1487
7c58a3c - Cornelius Roemer, Fri Feb 10 14:04:43 2023 +0100 : Added lineage XBB.1.5.10 (S:F456L) with 50 designations from #1614
...